Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07390 and PGA1_c07400 overlap by 4 nucleotides PGA1_c07400 and PGA1_c07410 overlap by 1 nucleotides PGA1_c07410 and PGA1_c07420 are separated by 150 nucleotides
PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686
_c07390
PGA1_c07400: PGA1_c07400 - binding protein dependent transport system permease, at 763,683 to 764,531
_c07400
PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478
_c07410
PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879
_c07420
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 763.694 kb on - strand at 763.704 kb on - strand at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.806 kb on - strand, within PGA1_c07400 at 763.829 kb on - strand, within PGA1_c07400 at 763.845 kb on + strand, within PGA1_c07400 at 763.941 kb on - strand, within PGA1_c07400 at 763.944 kb on + strand, within PGA1_c07400 at 763.952 kb on - strand, within PGA1_c07400 at 763.957 kb on + strand, within PGA1_c07400 at 763.992 kb on - strand, within PGA1_c07400 at 763.999 kb on + strand, within PGA1_c07400 at 764.046 kb on - strand, within PGA1_c07400 at 764.048 kb on - strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.250 kb on - strand, within PGA1_c07400 at 764.252 kb on + strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.283 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.291 kb on - strand, within PGA1_c07400 at 764.293 kb on + strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.362 kb on - strand, within PGA1_c07400 at 764.365 kb on - strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.382 kb on + strand, within PGA1_c07400 at 764.382 kb on - strand, within PGA1_c07400 at 764.389 kb on - strand, within PGA1_c07400 at 764.474 kb on + strand at 764.477 kb on + strand at 764.493 kb on - strand at 764.508 kb on + strand at 764.508 kb on + strand at 764.516 kb on - strand at 764.537 kb on - strand at 764.549 kb on - strand at 764.580 kb on + strand at 764.608 kb on - strand at 764.624 kb on + strand at 764.630 kb on + strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.705 kb on + strand, within PGA1_c07410 at 764.739 kb on - strand, within PGA1_c07410 at 764.840 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.878 kb on + strand, within PGA1_c07410 at 764.893 kb on + strand, within PGA1_c07410 at 764.922 kb on + strand, within PGA1_c07410 at 764.969 kb on + strand, within PGA1_c07410 at 764.977 kb on - strand, within PGA1_c07410 at 764.981 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 765.000 kb on - strand, within PGA1_c07410 at 765.002 kb on + strand, within PGA1_c07410 at 765.005 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.020 kb on - strand, within PGA1_c07410 at 765.037 kb on + strand, within PGA1_c07410 at 765.112 kb on + strand, within PGA1_c07410 at 765.120 kb on - strand, within PGA1_c07410 at 765.123 kb on + strand, within PGA1_c07410 at 765.131 kb on - strand, within PGA1_c07410 at 765.147 kb on + strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.160 kb on - strand, within PGA1_c07410 at 765.162 kb on + strand, within PGA1_c07410 at 765.182 kb on + strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.225 kb on - strand, within PGA1_c07410 at 765.261 kb on + strand, within PGA1_c07410 at 765.283 kb on + strand, within PGA1_c07410 at 765.286 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.353 kb on + strand, within PGA1_c07410 at 765.390 kb on - strand at 765.462 kb on + strand at 765.472 kb on - strand at 765.478 kb on + strand at 765.530 kb on - strand at 765.591 kb on - strand at 765.591 kb on - strand at 765.630 kb on + strand at 765.638 kb on - strand at 765.638 kb on - strand at 765.670 kb on - strand at 765.673 kb on + strand at 765.673 kb on + strand at 765.681 kb on - strand at 765.681 kb on - strand at 765.701 kb on - strand at 765.711 kb on - strand at 765.718 kb on - strand at 765.771 kb on - strand, within PGA1_c07420 at 765.804 kb on - strand, within PGA1_c07420 at 765.838 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.854 kb on + strand, within PGA1_c07420 at 765.873 kb on - strand, within PGA1_c07420 at 765.922 kb on - strand, within PGA1_c07420 at 765.936 kb on + strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 766.046 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.124 kb on + strand, within PGA1_c07420 at 766.151 kb on - strand, within PGA1_c07420 at 766.157 kb on - strand, within PGA1_c07420 at 766.194 kb on - strand, within PGA1_c07420 at 766.222 kb on + strand, within PGA1_c07420 at 766.250 kb on - strand, within PGA1_c07420 at 766.255 kb on - strand, within PGA1_c07420 at 766.265 kb on + strand, within PGA1_c07420 at 766.314 kb on + strand, within PGA1_c07420 at 766.374 kb on - strand, within PGA1_c07420 at 766.387 kb on + strand, within PGA1_c07420 at 766.405 kb on - strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.423 kb on + strand, within PGA1_c07420 at 766.435 kb on + strand, within PGA1_c07420 at 766.443 kb on - strand, within PGA1_c07420 at 766.459 kb on + strand, within PGA1_c07420 at 766.466 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.474 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 763,694 - -0.7 763,704 - +2.4 763,782 + PGA1_c07400 0.12 -0.5 763,782 + PGA1_c07400 0.12 +2.0 763,782 + PGA1_c07400 0.12 +0.6 763,806 - PGA1_c07400 0.14 -2.3 763,829 - PGA1_c07400 0.17 +1.4 763,845 + PGA1_c07400 0.19 -1.0 763,941 - PGA1_c07400 0.30 +0.7 763,944 + PGA1_c07400 0.31 +0.8 763,952 - PGA1_c07400 0.32 -0.1 763,957 + PGA1_c07400 0.32 +2.1 763,992 - PGA1_c07400 0.36 +1.9 763,999 + PGA1_c07400 0.37 +1.1 764,046 - PGA1_c07400 0.43 -0.5 764,048 - PGA1_c07400 0.43 +0.3 764,084 + PGA1_c07400 0.47 -2.3 764,084 + PGA1_c07400 0.47 -2.5 764,236 - PGA1_c07400 0.65 -3.0 764,236 - PGA1_c07400 0.65 +1.2 764,236 - PGA1_c07400 0.65 -0.1 764,242 + PGA1_c07400 0.66 +3.1 764,242 + PGA1_c07400 0.66 +0.4 764,247 + PGA1_c07400 0.66 +1.7 764,247 + PGA1_c07400 0.66 +1.2 764,247 + PGA1_c07400 0.66 +1.8 764,247 + PGA1_c07400 0.66 -1.7 764,247 + PGA1_c07400 0.66 +1.0 764,250 - PGA1_c07400 0.67 -1.5 764,252 + PGA1_c07400 0.67 +0.9 764,255 - PGA1_c07400 0.67 +0.5 764,255 - PGA1_c07400 0.67 -1.3 764,255 - PGA1_c07400 0.67 +0.3 764,283 + PGA1_c07400 0.71 +0.5 764,288 + PGA1_c07400 0.71 +0.3 764,288 + PGA1_c07400 0.71 +1.0 764,288 + PGA1_c07400 0.71 +0.3 764,288 + PGA1_c07400 0.71 +0.6 764,291 - PGA1_c07400 0.72 -2.2 764,293 + PGA1_c07400 0.72 +1.6 764,296 - PGA1_c07400 0.72 -0.5 764,296 - PGA1_c07400 0.72 -1.3 764,354 + PGA1_c07400 0.79 +0.1 764,354 + PGA1_c07400 0.79 -2.3 764,354 + PGA1_c07400 0.79 -2.2 764,354 + PGA1_c07400 0.79 +0.2 764,357 + PGA1_c07400 0.79 -0.9 764,357 + PGA1_c07400 0.79 -0.6 764,357 + PGA1_c07400 0.79 -1.3 764,362 - PGA1_c07400 0.80 -2.1 764,365 - PGA1_c07400 0.80 +1.5 764,372 + PGA1_c07400 0.81 -1.0 764,372 + PGA1_c07400 0.81 -1.3 764,372 + PGA1_c07400 0.81 +1.9 764,372 + PGA1_c07400 0.81 -1.9 764,372 + PGA1_c07400 0.81 -2.4 764,372 + PGA1_c07400 0.81 -2.2 764,372 + PGA1_c07400 0.81 +1.3 764,380 - PGA1_c07400 0.82 +1.6 764,380 - PGA1_c07400 0.82 +0.7 764,380 - PGA1_c07400 0.82 +2.3 764,380 - PGA1_c07400 0.82 +0.8 764,380 - PGA1_c07400 0.82 -2.9 764,380 - PGA1_c07400 0.82 +2.9 764,382 + PGA1_c07400 0.82 +1.1 764,382 - PGA1_c07400 0.82 +1.5 764,389 - PGA1_c07400 0.83 +1.1 764,474 + +1.9 764,477 + +1.6 764,493 - +0.6 764,508 + -0.9 764,508 + +0.3 764,516 - -1.9 764,537 - +1.3 764,549 - -1.2 764,580 + -0.9 764,608 - +0.3 764,624 + -2.4 764,630 + PGA1_c07410 0.10 +0.7 764,632 - PGA1_c07410 0.11 -1.9 764,632 - PGA1_c07410 0.11 -1.0 764,705 + PGA1_c07410 0.18 -0.7 764,739 - PGA1_c07410 0.22 +0.4 764,840 + PGA1_c07410 0.33 -1.0 764,853 + PGA1_c07410 0.34 -2.3 764,853 + PGA1_c07410 0.34 +1.3 764,853 + PGA1_c07410 0.34 -0.9 764,861 - PGA1_c07410 0.35 -0.0 764,861 - PGA1_c07410 0.35 +0.7 764,863 + PGA1_c07410 0.35 +2.2 764,863 + PGA1_c07410 0.35 +0.3 764,878 + PGA1_c07410 0.37 +0.8 764,893 + PGA1_c07410 0.38 +2.1 764,922 + PGA1_c07410 0.41 -1.0 764,969 + PGA1_c07410 0.46 -2.4 764,977 - PGA1_c07410 0.47 -0.2 764,981 + PGA1_c07410 0.47 -0.3 764,986 + PGA1_c07410 0.48 +0.1 764,986 + PGA1_c07410 0.48 +1.4 764,986 + PGA1_c07410 0.48 -2.8 764,991 + PGA1_c07410 0.49 -1.9 764,991 + PGA1_c07410 0.49 -1.7 764,994 - PGA1_c07410 0.49 -1.5 764,994 - PGA1_c07410 0.49 -0.5 764,994 - PGA1_c07410 0.49 +1.2 764,994 - PGA1_c07410 0.49 -2.7 764,994 - PGA1_c07410 0.49 +0.5 764,994 - PGA1_c07410 0.49 +1.7 764,999 - PGA1_c07410 0.49 +0.7 764,999 - PGA1_c07410 0.49 +3.2 765,000 - PGA1_c07410 0.49 +2.9 765,002 + PGA1_c07410 0.50 -0.0 765,005 - PGA1_c07410 0.50 -0.2 765,010 - PGA1_c07410 0.51 -0.5 765,010 - PGA1_c07410 0.51 +1.6 765,020 - PGA1_c07410 0.52 -1.5 765,037 + PGA1_c07410 0.53 +1.8 765,112 + PGA1_c07410 0.61 +1.2 765,120 - PGA1_c07410 0.62 -0.0 765,123 + PGA1_c07410 0.62 -2.2 765,131 - PGA1_c07410 0.63 -1.0 765,147 + PGA1_c07410 0.65 +2.0 765,155 - PGA1_c07410 0.66 -2.2 765,155 - PGA1_c07410 0.66 +0.9 765,160 - PGA1_c07410 0.66 -1.8 765,162 + PGA1_c07410 0.67 -0.0 765,182 + PGA1_c07410 0.69 -2.1 765,211 - PGA1_c07410 0.72 +1.8 765,211 - PGA1_c07410 0.72 -1.2 765,225 - PGA1_c07410 0.73 -1.5 765,261 + PGA1_c07410 0.77 -1.4 765,283 + PGA1_c07410 0.79 +2.0 765,286 - PGA1_c07410 0.80 -0.1 765,291 - PGA1_c07410 0.80 -0.3 765,291 - PGA1_c07410 0.80 +0.7 765,307 + PGA1_c07410 0.82 +1.2 765,307 + PGA1_c07410 0.82 +1.3 765,307 + PGA1_c07410 0.82 -1.6 765,315 - PGA1_c07410 0.83 -1.5 765,315 - PGA1_c07410 0.83 -1.9 765,315 - PGA1_c07410 0.83 -2.5 765,353 + PGA1_c07410 0.87 -1.3 765,390 - +1.7 765,462 + +1.3 765,472 - -1.3 765,478 + +1.3 765,530 - +1.0 765,591 - +2.1 765,591 - -1.8 765,630 + +1.9 765,638 - +1.9 765,638 - -1.2 765,670 - +1.9 765,673 + +1.2 765,673 + -1.9 765,681 - -1.9 765,681 - +3.0 765,701 - -2.2 765,711 - -0.0 765,718 - +1.3 765,771 - PGA1_c07420 0.11 -0.3 765,804 - PGA1_c07420 0.14 +1.8 765,838 + PGA1_c07420 0.17 -0.7 765,843 + PGA1_c07420 0.17 +2.0 765,843 + PGA1_c07420 0.17 +1.7 765,854 + PGA1_c07420 0.18 -0.0 765,873 - PGA1_c07420 0.20 -1.7 765,922 - PGA1_c07420 0.23 +1.3 765,936 + PGA1_c07420 0.25 -1.7 765,944 - PGA1_c07420 0.25 +1.4 765,944 - PGA1_c07420 0.25 -0.9 766,046 + PGA1_c07420 0.33 -2.8 766,051 + PGA1_c07420 0.34 +0.6 766,051 + PGA1_c07420 0.34 -1.9 766,124 + PGA1_c07420 0.40 -2.6 766,151 - PGA1_c07420 0.42 +0.4 766,157 - PGA1_c07420 0.42 -1.4 766,194 - PGA1_c07420 0.45 -1.4 766,222 + PGA1_c07420 0.47 +1.1 766,250 - PGA1_c07420 0.50 -0.7 766,255 - PGA1_c07420 0.50 -2.3 766,265 + PGA1_c07420 0.51 -1.1 766,314 + PGA1_c07420 0.55 -2.9 766,374 - PGA1_c07420 0.60 -0.5 766,387 + PGA1_c07420 0.61 -1.4 766,405 - PGA1_c07420 0.62 +2.7 766,408 + PGA1_c07420 0.62 -2.5 766,408 + PGA1_c07420 0.62 -1.5 766,408 + PGA1_c07420 0.62 +0.7 766,416 - PGA1_c07420 0.63 -1.0 766,416 - PGA1_c07420 0.63 -2.1 766,416 - PGA1_c07420 0.63 -1.4 766,423 + PGA1_c07420 0.63 +0.2 766,435 + PGA1_c07420 0.64 +2.1 766,443 - PGA1_c07420 0.65 -0.1 766,459 + PGA1_c07420 0.66 -1.7 766,466 + PGA1_c07420 0.67 +1.6 766,467 + PGA1_c07420 0.67 -0.7 766,467 + PGA1_c07420 0.67 +0.3 766,467 + PGA1_c07420 0.67 -1.6 766,467 + PGA1_c07420 0.67 +1.2 766,467 + PGA1_c07420 0.67 -1.4 766,467 + PGA1_c07420 0.67 -0.1 766,467 + PGA1_c07420 0.67 +0.1 766,467 + PGA1_c07420 0.67 +1.2 766,467 + PGA1_c07420 0.67 +2.9 766,474 - PGA1_c07420 0.68 -1.8 766,475 - PGA1_c07420 0.68 -2.0 766,475 - PGA1_c07420 0.68 +1.3 766,475 - PGA1_c07420 0.68 -2.5 766,475 - PGA1_c07420 0.68 +0.8 766,475 - PGA1_c07420 0.68 -0.5 766,475 - PGA1_c07420 0.68 +0.4
Or see this region's nucleotide sequence