Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07140 and PGA1_c07150 overlap by 4 nucleotides PGA1_c07150 and PGA1_c07160 are separated by 19 nucleotides PGA1_c07160 and PGA1_c07170 are separated by 23 nucleotides PGA1_c07170 and PGA1_c07180 are separated by 144 nucleotides
PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975
_c07140
PGA1_c07150: PGA1_c07150 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 734,972 to 735,772
_c07150
PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102
_c07160
PGA1_c07170: PGA1_c07170 - acetate operon repressor-like protein, at 737,126 to 737,938
_c07170
PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048
_c07180
Position (kb) 735
736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 734.802 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.810 kb on - strand, within PGA1_c07140 at 734.810 kb on - strand, within PGA1_c07140 at 734.824 kb on - strand, within PGA1_c07140 at 734.860 kb on + strand at 734.865 kb on + strand at 734.878 kb on - strand at 734.937 kb on - strand at 734.966 kb on - strand at 735.037 kb on + strand at 735.041 kb on - strand at 735.045 kb on - strand at 735.068 kb on + strand, within PGA1_c07150 at 735.080 kb on - strand, within PGA1_c07150 at 735.089 kb on - strand, within PGA1_c07150 at 735.128 kb on + strand, within PGA1_c07150 at 735.129 kb on + strand, within PGA1_c07150 at 735.130 kb on - strand, within PGA1_c07150 at 735.136 kb on - strand, within PGA1_c07150 at 735.139 kb on + strand, within PGA1_c07150 at 735.139 kb on + strand, within PGA1_c07150 at 735.142 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.185 kb on + strand, within PGA1_c07150 at 735.185 kb on + strand, within PGA1_c07150 at 735.190 kb on + strand, within PGA1_c07150 at 735.238 kb on - strand, within PGA1_c07150 at 735.257 kb on + strand, within PGA1_c07150 at 735.265 kb on - strand, within PGA1_c07150 at 735.321 kb on + strand, within PGA1_c07150 at 735.328 kb on + strand, within PGA1_c07150 at 735.328 kb on + strand, within PGA1_c07150 at 735.376 kb on - strand, within PGA1_c07150 at 735.380 kb on + strand, within PGA1_c07150 at 735.406 kb on - strand, within PGA1_c07150 at 735.498 kb on + strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.545 kb on - strand, within PGA1_c07150 at 735.580 kb on - strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.644 kb on + strand, within PGA1_c07150 at 735.655 kb on + strand, within PGA1_c07150 at 735.657 kb on + strand, within PGA1_c07150 at 735.745 kb on - strand at 735.745 kb on - strand at 735.804 kb on - strand at 735.825 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.853 kb on - strand at 735.879 kb on + strand at 735.884 kb on + strand at 735.884 kb on + strand at 735.900 kb on + strand at 735.907 kb on + strand at 735.907 kb on + strand at 735.908 kb on - strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.931 kb on - strand, within PGA1_c07160 at 735.961 kb on + strand, within PGA1_c07160 at 735.996 kb on - strand, within PGA1_c07160 at 736.014 kb on - strand, within PGA1_c07160 at 736.046 kb on - strand, within PGA1_c07160 at 736.048 kb on + strand, within PGA1_c07160 at 736.056 kb on - strand, within PGA1_c07160 at 736.066 kb on - strand, within PGA1_c07160 at 736.076 kb on + strand, within PGA1_c07160 at 736.159 kb on - strand, within PGA1_c07160 at 736.168 kb on - strand, within PGA1_c07160 at 736.168 kb on - strand, within PGA1_c07160 at 736.224 kb on - strand, within PGA1_c07160 at 736.240 kb on - strand, within PGA1_c07160 at 736.240 kb on - strand, within PGA1_c07160 at 736.342 kb on - strand, within PGA1_c07160 at 736.342 kb on - strand, within PGA1_c07160 at 736.359 kb on - strand, within PGA1_c07160 at 736.360 kb on + strand, within PGA1_c07160 at 736.365 kb on + strand, within PGA1_c07160 at 736.418 kb on + strand, within PGA1_c07160 at 736.495 kb on + strand, within PGA1_c07160 at 736.502 kb on - strand, within PGA1_c07160 at 736.534 kb on + strand, within PGA1_c07160 at 736.559 kb on + strand, within PGA1_c07160 at 736.601 kb on - strand, within PGA1_c07160 at 736.734 kb on - strand, within PGA1_c07160 at 736.736 kb on + strand, within PGA1_c07160 at 736.736 kb on + strand, within PGA1_c07160 at 736.801 kb on + strand, within PGA1_c07160 at 736.817 kb on + strand, within PGA1_c07160 at 736.822 kb on + strand, within PGA1_c07160 at 736.876 kb on - strand, within PGA1_c07160 at 736.880 kb on - strand, within PGA1_c07160 at 736.916 kb on - strand, within PGA1_c07160 at 736.924 kb on + strand, within PGA1_c07160 at 736.932 kb on - strand, within PGA1_c07160 at 736.955 kb on + strand, within PGA1_c07160 at 736.963 kb on + strand, within PGA1_c07160 at 736.991 kb on + strand at 737.030 kb on - strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.097 kb on + strand at 737.142 kb on + strand at 737.142 kb on + strand at 737.150 kb on - strand at 737.282 kb on - strand, within PGA1_c07170 at 737.283 kb on - strand, within PGA1_c07170 at 737.327 kb on - strand, within PGA1_c07170 at 737.385 kb on - strand, within PGA1_c07170 at 737.398 kb on - strand, within PGA1_c07170 at 737.404 kb on - strand, within PGA1_c07170 at 737.430 kb on + strand, within PGA1_c07170 at 737.445 kb on + strand, within PGA1_c07170 at 737.445 kb on + strand, within PGA1_c07170 at 737.508 kb on - strand, within PGA1_c07170 at 737.543 kb on + strand, within PGA1_c07170 at 737.543 kb on + strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.574 kb on - strand, within PGA1_c07170 at 737.574 kb on - strand, within PGA1_c07170 at 737.576 kb on + strand, within PGA1_c07170 at 737.576 kb on + strand, within PGA1_c07170 at 737.584 kb on - strand, within PGA1_c07170 at 737.598 kb on + strand, within PGA1_c07170 at 737.598 kb on + strand, within PGA1_c07170 at 737.668 kb on + strand, within PGA1_c07170 at 737.671 kb on - strand, within PGA1_c07170 at 737.701 kb on - strand, within PGA1_c07170 at 737.701 kb on - strand, within PGA1_c07170 at 737.787 kb on + strand, within PGA1_c07170 at 737.810 kb on + strand, within PGA1_c07170 at 737.815 kb on + strand, within PGA1_c07170 at 737.823 kb on - strand, within PGA1_c07170 at 737.848 kb on + strand, within PGA1_c07170 at 737.866 kb on - strand at 737.898 kb on - strand at 738.004 kb on - strand at 738.007 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.020 kb on - strand at 738.020 kb on - strand at 738.041 kb on + strand at 738.041 kb on + strand at 738.055 kb on + strand at 738.063 kb on - strand at 738.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 734,802 + PGA1_c07140 0.86 -2.7 734,802 + PGA1_c07140 0.86 +1.1 734,802 + PGA1_c07140 0.86 -0.0 734,810 - PGA1_c07140 0.87 -0.5 734,810 - PGA1_c07140 0.87 +0.6 734,824 - PGA1_c07140 0.88 -2.4 734,860 + +0.8 734,865 + -2.8 734,878 - +2.8 734,937 - -1.3 734,966 - -0.0 735,037 + -2.0 735,041 - +0.6 735,045 - +0.3 735,068 + PGA1_c07150 0.12 -1.5 735,080 - PGA1_c07150 0.13 +0.8 735,089 - PGA1_c07150 0.15 -0.3 735,128 + PGA1_c07150 0.19 -1.8 735,129 + PGA1_c07150 0.20 -0.7 735,130 - PGA1_c07150 0.20 +0.7 735,136 - PGA1_c07150 0.20 +0.5 735,139 + PGA1_c07150 0.21 -0.5 735,139 + PGA1_c07150 0.21 +0.1 735,142 - PGA1_c07150 0.21 -1.5 735,147 - PGA1_c07150 0.22 -0.7 735,147 - PGA1_c07150 0.22 -0.5 735,147 - PGA1_c07150 0.22 -3.7 735,185 + PGA1_c07150 0.27 +2.4 735,185 + PGA1_c07150 0.27 +1.7 735,190 + PGA1_c07150 0.27 +2.8 735,238 - PGA1_c07150 0.33 -0.4 735,257 + PGA1_c07150 0.36 +0.4 735,265 - PGA1_c07150 0.37 +0.7 735,321 + PGA1_c07150 0.44 -1.2 735,328 + PGA1_c07150 0.44 +0.4 735,328 + PGA1_c07150 0.44 -1.8 735,376 - PGA1_c07150 0.50 -2.2 735,380 + PGA1_c07150 0.51 +2.8 735,406 - PGA1_c07150 0.54 +1.8 735,498 + PGA1_c07150 0.66 -0.1 735,517 - PGA1_c07150 0.68 -1.0 735,517 - PGA1_c07150 0.68 -1.4 735,517 - PGA1_c07150 0.68 -1.6 735,545 - PGA1_c07150 0.72 -0.5 735,580 - PGA1_c07150 0.76 -1.4 735,587 + PGA1_c07150 0.77 +1.5 735,587 + PGA1_c07150 0.77 +1.0 735,587 + PGA1_c07150 0.77 -2.2 735,644 + PGA1_c07150 0.84 +1.1 735,655 + PGA1_c07150 0.85 +0.7 735,657 + PGA1_c07150 0.86 -1.7 735,745 - +0.5 735,745 - -0.7 735,804 - -0.6 735,825 + -1.0 735,840 + +0.7 735,840 + -2.2 735,840 + -1.3 735,840 + -0.9 735,840 + +0.9 735,848 - +0.8 735,848 - -1.7 735,848 - +0.5 735,848 - -1.3 735,848 - -2.8 735,848 - +1.4 735,848 - +1.7 735,853 - -1.4 735,879 + +0.7 735,884 + +3.0 735,884 + -0.7 735,900 + +2.3 735,907 + -0.5 735,907 + -2.8 735,908 - -2.1 735,910 + -0.7 735,910 + +0.7 735,931 - PGA1_c07160 0.11 -2.8 735,961 + PGA1_c07160 0.13 -2.2 735,996 - PGA1_c07160 0.16 -1.0 736,014 - PGA1_c07160 0.17 -0.0 736,046 - PGA1_c07160 0.19 +1.0 736,048 + PGA1_c07160 0.20 +1.9 736,056 - PGA1_c07160 0.20 -1.8 736,066 - PGA1_c07160 0.21 -1.4 736,076 + PGA1_c07160 0.22 -0.7 736,159 - PGA1_c07160 0.28 -0.0 736,168 - PGA1_c07160 0.29 -1.0 736,168 - PGA1_c07160 0.29 +1.1 736,224 - PGA1_c07160 0.33 +1.2 736,240 - PGA1_c07160 0.34 -0.3 736,240 - PGA1_c07160 0.34 -0.1 736,342 - PGA1_c07160 0.42 +1.1 736,342 - PGA1_c07160 0.42 +0.3 736,359 - PGA1_c07160 0.43 -1.8 736,360 + PGA1_c07160 0.43 -1.4 736,365 + PGA1_c07160 0.44 -0.7 736,418 + PGA1_c07160 0.48 +0.1 736,495 + PGA1_c07160 0.54 +0.6 736,502 - PGA1_c07160 0.54 +2.0 736,534 + PGA1_c07160 0.57 +1.8 736,559 + PGA1_c07160 0.59 -1.0 736,601 - PGA1_c07160 0.62 -1.5 736,734 - PGA1_c07160 0.72 +0.3 736,736 + PGA1_c07160 0.72 +0.3 736,736 + PGA1_c07160 0.72 -3.1 736,801 + PGA1_c07160 0.77 +0.4 736,817 + PGA1_c07160 0.78 +1.5 736,822 + PGA1_c07160 0.79 +1.1 736,876 - PGA1_c07160 0.83 -1.4 736,880 - PGA1_c07160 0.83 -0.3 736,916 - PGA1_c07160 0.86 -2.4 736,924 + PGA1_c07160 0.86 -1.7 736,932 - PGA1_c07160 0.87 -2.2 736,955 + PGA1_c07160 0.89 -1.3 736,963 + PGA1_c07160 0.89 -1.1 736,991 + -1.8 737,030 - -0.3 737,053 + -0.9 737,053 + -1.3 737,053 + +1.0 737,053 + +1.0 737,053 + -2.2 737,053 + +0.7 737,053 + -1.7 737,053 + +0.2 737,053 + -0.7 737,053 + +0.7 737,053 + +3.6 737,053 + -2.0 737,053 + -2.0 737,053 + -2.4 737,053 + -2.3 737,053 + +1.3 737,053 + -3.4 737,053 + +1.1 737,053 + -1.8 737,053 + -3.1 737,053 + -1.7 737,061 - -2.2 737,061 - -2.6 737,061 - +2.3 737,061 - +0.6 737,061 - +1.7 737,061 - -1.0 737,061 - +2.0 737,061 - -1.0 737,061 - -2.3 737,097 + +2.1 737,142 + -1.9 737,142 + -1.6 737,150 - +0.5 737,282 - PGA1_c07170 0.19 +2.9 737,283 - PGA1_c07170 0.19 -1.3 737,327 - PGA1_c07170 0.25 +0.2 737,385 - PGA1_c07170 0.32 -0.1 737,398 - PGA1_c07170 0.33 +1.5 737,404 - PGA1_c07170 0.34 +2.2 737,430 + PGA1_c07170 0.37 +0.8 737,445 + PGA1_c07170 0.39 -2.2 737,445 + PGA1_c07170 0.39 +0.3 737,508 - PGA1_c07170 0.47 -1.1 737,543 + PGA1_c07170 0.51 -1.6 737,543 + PGA1_c07170 0.51 -2.4 737,551 - PGA1_c07170 0.52 -2.4 737,551 - PGA1_c07170 0.52 +0.4 737,551 - PGA1_c07170 0.52 -1.2 737,560 + PGA1_c07170 0.53 +3.3 737,560 + PGA1_c07170 0.53 -2.1 737,560 + PGA1_c07170 0.53 +1.6 737,560 + PGA1_c07170 0.53 +1.5 737,568 - PGA1_c07170 0.54 +0.2 737,568 - PGA1_c07170 0.54 -2.2 737,568 - PGA1_c07170 0.54 +0.3 737,574 - PGA1_c07170 0.55 +0.8 737,574 - PGA1_c07170 0.55 -1.0 737,576 + PGA1_c07170 0.55 +0.2 737,576 + PGA1_c07170 0.55 -0.9 737,584 - PGA1_c07170 0.56 -2.3 737,598 + PGA1_c07170 0.58 -3.4 737,598 + PGA1_c07170 0.58 -1.6 737,668 + PGA1_c07170 0.67 -2.2 737,671 - PGA1_c07170 0.67 +1.4 737,701 - PGA1_c07170 0.71 +0.3 737,701 - PGA1_c07170 0.71 +0.4 737,787 + PGA1_c07170 0.81 -2.4 737,810 + PGA1_c07170 0.84 +1.1 737,815 + PGA1_c07170 0.85 +1.5 737,823 - PGA1_c07170 0.86 +3.3 737,848 + PGA1_c07170 0.89 +1.9 737,866 - +0.8 737,898 - -1.3 738,004 - -0.3 738,007 + +1.4 738,012 + -0.5 738,012 + -1.0 738,012 + -1.4 738,012 + +0.1 738,012 + +0.7 738,020 - -1.4 738,020 - +1.7 738,041 + +0.6 738,041 + -1.5 738,055 + -1.4 738,063 - -0.0 738,088 + -3.3
Or see this region's nucleotide sequence