Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00650 and PGA1_c00660 are separated by 106 nucleotides PGA1_c00660 and PGA1_c00670 overlap by 4 nucleotides PGA1_c00670 and PGA1_c00680 are separated by 6 nucleotides PGA1_c00680 and PGA1_c00690 are separated by 96 nucleotides
PGA1_c00650: PGA1_c00650 - Uncharacterized conserved protein, at 66,112 to 66,639
_c00650
PGA1_c00660: PGA1_c00660 - transcriptional regulator, lysR family, at 66,746 to 67,624
_c00660
PGA1_c00670: PGA1_c00670 - putative integral membrane protein, at 67,621 to 68,529
_c00670
PGA1_c00680: PGA1_c00680 - transcriptional regulator, arsR family, at 68,536 to 68,883
_c00680
PGA1_c00690: PGA1_c00690 - putative integral membrane protein, at 68,980 to 69,873
_c00690
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 66.641 kb on - strand at 66.641 kb on - strand at 66.641 kb on - strand at 66.641 kb on - strand at 66.705 kb on + strand at 66.730 kb on - strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.745 kb on - strand at 66.771 kb on - strand at 66.850 kb on - strand, within PGA1_c00660 at 66.871 kb on - strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.991 kb on + strand, within PGA1_c00660 at 66.998 kb on + strand, within PGA1_c00660 at 66.999 kb on + strand, within PGA1_c00660 at 67.102 kb on - strand, within PGA1_c00660 at 67.208 kb on + strand, within PGA1_c00660 at 67.238 kb on + strand, within PGA1_c00660 at 67.267 kb on + strand, within PGA1_c00660 at 67.284 kb on - strand, within PGA1_c00660 at 67.291 kb on - strand, within PGA1_c00660 at 67.329 kb on - strand, within PGA1_c00660 at 67.421 kb on - strand, within PGA1_c00660 at 67.429 kb on + strand, within PGA1_c00660 at 67.429 kb on + strand, within PGA1_c00660 at 67.437 kb on - strand, within PGA1_c00660 at 67.459 kb on - strand, within PGA1_c00660 at 67.487 kb on - strand, within PGA1_c00660 at 67.498 kb on - strand, within PGA1_c00660 at 67.531 kb on - strand, within PGA1_c00660 at 67.550 kb on + strand at 67.550 kb on + strand at 67.558 kb on - strand at 67.571 kb on - strand at 67.595 kb on - strand at 67.609 kb on + strand at 67.609 kb on + strand at 67.617 kb on - strand at 67.617 kb on - strand at 67.642 kb on - strand at 67.659 kb on - strand at 67.694 kb on + strand at 67.717 kb on + strand, within PGA1_c00670 at 67.718 kb on + strand, within PGA1_c00670 at 67.721 kb on - strand, within PGA1_c00670 at 67.728 kb on + strand, within PGA1_c00670 at 67.728 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.787 kb on + strand, within PGA1_c00670 at 67.788 kb on - strand, within PGA1_c00670 at 67.792 kb on + strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.795 kb on - strand, within PGA1_c00670 at 67.864 kb on + strand, within PGA1_c00670 at 67.902 kb on - strand, within PGA1_c00670 at 67.907 kb on + strand, within PGA1_c00670 at 67.912 kb on + strand, within PGA1_c00670 at 67.940 kb on - strand, within PGA1_c00670 at 67.971 kb on + strand, within PGA1_c00670 at 67.990 kb on + strand, within PGA1_c00670 at 67.990 kb on + strand, within PGA1_c00670 at 67.990 kb on + strand, within PGA1_c00670 at 67.990 kb on + strand, within PGA1_c00670 at 67.990 kb on + strand, within PGA1_c00670 at 67.998 kb on - strand, within PGA1_c00670 at 67.998 kb on - strand, within PGA1_c00670 at 68.046 kb on + strand, within PGA1_c00670 at 68.109 kb on + strand, within PGA1_c00670 at 68.120 kb on + strand, within PGA1_c00670 at 68.147 kb on + strand, within PGA1_c00670 at 68.167 kb on + strand, within PGA1_c00670 at 68.255 kb on + strand, within PGA1_c00670 at 68.288 kb on - strand, within PGA1_c00670 at 68.288 kb on - strand, within PGA1_c00670 at 68.288 kb on - strand, within PGA1_c00670 at 68.288 kb on - strand, within PGA1_c00670 at 68.303 kb on - strand, within PGA1_c00670 at 68.312 kb on + strand, within PGA1_c00670 at 68.312 kb on + strand, within PGA1_c00670 at 68.312 kb on + strand, within PGA1_c00670 at 68.330 kb on + strand, within PGA1_c00670 at 68.344 kb on - strand, within PGA1_c00670 at 68.354 kb on - strand, within PGA1_c00670 at 68.358 kb on + strand, within PGA1_c00670 at 68.366 kb on - strand, within PGA1_c00670 at 68.366 kb on - strand, within PGA1_c00670 at 68.366 kb on - strand, within PGA1_c00670 at 68.366 kb on - strand, within PGA1_c00670 at 68.367 kb on - strand, within PGA1_c00670 at 68.373 kb on - strand, within PGA1_c00670 at 68.375 kb on + strand, within PGA1_c00670 at 68.375 kb on + strand, within PGA1_c00670 at 68.377 kb on - strand, within PGA1_c00670 at 68.377 kb on - strand, within PGA1_c00670 at 68.384 kb on - strand, within PGA1_c00670 at 68.418 kb on - strand, within PGA1_c00670 at 68.423 kb on - strand, within PGA1_c00670 at 68.514 kb on + strand at 68.532 kb on - strand at 68.548 kb on + strand at 68.553 kb on - strand at 68.578 kb on - strand, within PGA1_c00680 at 68.584 kb on - strand, within PGA1_c00680 at 68.612 kb on + strand, within PGA1_c00680 at 68.835 kb on + strand, within PGA1_c00680 at 68.891 kb on + strand at 68.899 kb on - strand at 68.899 kb on - strand at 68.984 kb on - strand at 68.991 kb on + strand at 69.006 kb on - strand at 69.028 kb on + strand at 69.073 kb on - strand, within PGA1_c00690 at 69.076 kb on + strand, within PGA1_c00690 at 69.078 kb on + strand, within PGA1_c00690 at 69.109 kb on + strand, within PGA1_c00690 at 69.131 kb on - strand, within PGA1_c00690 at 69.201 kb on + strand, within PGA1_c00690 at 69.201 kb on - strand, within PGA1_c00690 at 69.238 kb on - strand, within PGA1_c00690 at 69.246 kb on - strand, within PGA1_c00690 at 69.292 kb on - strand, within PGA1_c00690 at 69.320 kb on - strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.322 kb on + strand, within PGA1_c00690 at 69.323 kb on + strand, within PGA1_c00690 at 69.330 kb on - strand, within PGA1_c00690 at 69.330 kb on - strand, within PGA1_c00690 at 69.330 kb on - strand, within PGA1_c00690 at 69.330 kb on - strand, within PGA1_c00690 at 69.378 kb on + strand, within PGA1_c00690 at 69.419 kb on + strand, within PGA1_c00690 at 69.419 kb on + strand, within PGA1_c00690 at 69.426 kb on + strand, within PGA1_c00690 at 69.426 kb on + strand, within PGA1_c00690 at 69.426 kb on + strand, within PGA1_c00690 at 69.426 kb on + strand, within PGA1_c00690 at 69.427 kb on - strand, within PGA1_c00690 at 69.434 kb on - strand, within PGA1_c00690 at 69.434 kb on - strand, within PGA1_c00690 at 69.434 kb on - strand, within PGA1_c00690 at 69.434 kb on - strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.462 kb on + strand, within PGA1_c00690 at 69.465 kb on - strand, within PGA1_c00690 at 69.465 kb on - strand, within PGA1_c00690
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 66,641 - +1.4 66,641 - +1.2 66,641 - +1.9 66,641 - +1.5 66,705 + -0.7 66,730 - +1.4 66,732 + +0.7 66,732 + -1.9 66,732 + +0.7 66,732 + +1.1 66,732 + -2.6 66,732 + +1.3 66,732 + +1.1 66,740 - -1.8 66,740 - +1.4 66,740 - -1.7 66,740 - -1.0 66,740 - +2.4 66,740 - -0.1 66,740 - +0.7 66,740 - +1.8 66,740 - +1.4 66,740 - +1.0 66,745 - -2.9 66,771 - -0.0 66,850 - PGA1_c00660 0.12 -1.6 66,871 - PGA1_c00660 0.14 -2.3 66,955 + PGA1_c00660 0.24 +1.4 66,955 + PGA1_c00660 0.24 +0.3 66,955 + PGA1_c00660 0.24 -2.3 66,955 + PGA1_c00660 0.24 -2.1 66,963 - PGA1_c00660 0.25 -2.3 66,963 - PGA1_c00660 0.25 -0.2 66,963 - PGA1_c00660 0.25 -2.0 66,963 - PGA1_c00660 0.25 -0.5 66,991 + PGA1_c00660 0.28 -1.2 66,998 + PGA1_c00660 0.29 -0.9 66,999 + PGA1_c00660 0.29 +0.8 67,102 - PGA1_c00660 0.41 -2.5 67,208 + PGA1_c00660 0.53 +0.7 67,238 + PGA1_c00660 0.56 +1.2 67,267 + PGA1_c00660 0.59 -1.5 67,284 - PGA1_c00660 0.61 -1.0 67,291 - PGA1_c00660 0.62 -1.3 67,329 - PGA1_c00660 0.66 -1.7 67,421 - PGA1_c00660 0.77 -0.8 67,429 + PGA1_c00660 0.78 +0.9 67,429 + PGA1_c00660 0.78 +2.7 67,437 - PGA1_c00660 0.79 -0.5 67,459 - PGA1_c00660 0.81 -0.7 67,487 - PGA1_c00660 0.84 -1.4 67,498 - PGA1_c00660 0.86 +1.0 67,531 - PGA1_c00660 0.89 -0.6 67,550 + -2.5 67,550 + +1.7 67,558 - +2.1 67,571 - -0.3 67,595 - +1.9 67,609 + -1.2 67,609 + +0.3 67,617 - -0.8 67,617 - -2.1 67,642 - -2.1 67,659 - +0.3 67,694 + -1.2 67,717 + PGA1_c00670 0.11 -2.4 67,718 + PGA1_c00670 0.11 +1.3 67,721 - PGA1_c00670 0.11 +1.2 67,728 + PGA1_c00670 0.12 -2.0 67,728 + PGA1_c00670 0.12 -3.1 67,787 + PGA1_c00670 0.18 +1.3 67,787 + PGA1_c00670 0.18 +2.0 67,787 + PGA1_c00670 0.18 +1.7 67,787 + PGA1_c00670 0.18 -2.1 67,787 + PGA1_c00670 0.18 +1.4 67,787 + PGA1_c00670 0.18 -1.8 67,787 + PGA1_c00670 0.18 -0.9 67,787 + PGA1_c00670 0.18 +0.1 67,787 + PGA1_c00670 0.18 -2.2 67,787 + PGA1_c00670 0.18 -2.6 67,787 + PGA1_c00670 0.18 -2.3 67,787 + PGA1_c00670 0.18 -2.0 67,787 + PGA1_c00670 0.18 -1.2 67,787 + PGA1_c00670 0.18 +1.1 67,788 - PGA1_c00670 0.18 -1.0 67,792 + PGA1_c00670 0.19 +0.9 67,795 - PGA1_c00670 0.19 +0.3 67,795 - PGA1_c00670 0.19 -2.5 67,795 - PGA1_c00670 0.19 -1.7 67,795 - PGA1_c00670 0.19 -0.9 67,795 - PGA1_c00670 0.19 +1.3 67,795 - PGA1_c00670 0.19 -0.1 67,795 - PGA1_c00670 0.19 +1.5 67,795 - PGA1_c00670 0.19 -0.3 67,795 - PGA1_c00670 0.19 +0.3 67,795 - PGA1_c00670 0.19 -0.2 67,795 - PGA1_c00670 0.19 -1.7 67,795 - PGA1_c00670 0.19 -1.3 67,795 - PGA1_c00670 0.19 -0.3 67,864 + PGA1_c00670 0.27 +0.2 67,902 - PGA1_c00670 0.31 -1.7 67,907 + PGA1_c00670 0.31 -0.3 67,912 + PGA1_c00670 0.32 +1.4 67,940 - PGA1_c00670 0.35 +0.6 67,971 + PGA1_c00670 0.39 +1.8 67,990 + PGA1_c00670 0.41 -3.2 67,990 + PGA1_c00670 0.41 -0.1 67,990 + PGA1_c00670 0.41 -1.9 67,990 + PGA1_c00670 0.41 -2.2 67,990 + PGA1_c00670 0.41 -2.2 67,998 - PGA1_c00670 0.41 -1.4 67,998 - PGA1_c00670 0.41 -1.0 68,046 + PGA1_c00670 0.47 +3.3 68,109 + PGA1_c00670 0.54 -1.0 68,120 + PGA1_c00670 0.55 +1.1 68,147 + PGA1_c00670 0.58 +3.6 68,167 + PGA1_c00670 0.60 -0.3 68,255 + PGA1_c00670 0.70 -0.8 68,288 - PGA1_c00670 0.73 -2.5 68,288 - PGA1_c00670 0.73 -0.2 68,288 - PGA1_c00670 0.73 -2.1 68,288 - PGA1_c00670 0.73 +2.8 68,303 - PGA1_c00670 0.75 +2.7 68,312 + PGA1_c00670 0.76 -1.1 68,312 + PGA1_c00670 0.76 +1.4 68,312 + PGA1_c00670 0.76 -0.5 68,330 + PGA1_c00670 0.78 +1.8 68,344 - PGA1_c00670 0.80 -0.9 68,354 - PGA1_c00670 0.81 -1.1 68,358 + PGA1_c00670 0.81 +2.0 68,366 - PGA1_c00670 0.82 -1.0 68,366 - PGA1_c00670 0.82 +0.3 68,366 - PGA1_c00670 0.82 +2.1 68,366 - PGA1_c00670 0.82 +1.1 68,367 - PGA1_c00670 0.82 +1.1 68,373 - PGA1_c00670 0.83 -2.3 68,375 + PGA1_c00670 0.83 -1.9 68,375 + PGA1_c00670 0.83 +0.7 68,377 - PGA1_c00670 0.83 -0.7 68,377 - PGA1_c00670 0.83 -1.7 68,384 - PGA1_c00670 0.84 -2.0 68,418 - PGA1_c00670 0.88 +1.2 68,423 - PGA1_c00670 0.88 -0.4 68,514 + +1.4 68,532 - -1.5 68,548 + +0.7 68,553 - -2.4 68,578 - PGA1_c00680 0.12 +1.0 68,584 - PGA1_c00680 0.14 +1.9 68,612 + PGA1_c00680 0.22 -0.3 68,835 + PGA1_c00680 0.86 +2.7 68,891 + +2.0 68,899 - +0.1 68,899 - +2.2 68,984 - -2.0 68,991 + +3.3 69,006 - -1.7 69,028 + +1.0 69,073 - PGA1_c00690 0.10 -1.4 69,076 + PGA1_c00690 0.11 -1.8 69,078 + PGA1_c00690 0.11 -0.1 69,109 + PGA1_c00690 0.14 +2.2 69,131 - PGA1_c00690 0.17 +2.0 69,201 + PGA1_c00690 0.25 -0.8 69,201 - PGA1_c00690 0.25 -1.0 69,238 - PGA1_c00690 0.29 -1.1 69,246 - PGA1_c00690 0.30 +1.4 69,292 - PGA1_c00690 0.35 -1.0 69,320 - PGA1_c00690 0.38 +0.4 69,322 + PGA1_c00690 0.38 -2.9 69,322 + PGA1_c00690 0.38 -0.2 69,322 + PGA1_c00690 0.38 +0.1 69,322 + PGA1_c00690 0.38 -1.9 69,322 + PGA1_c00690 0.38 -1.5 69,322 + PGA1_c00690 0.38 -2.1 69,322 + PGA1_c00690 0.38 +0.3 69,322 + PGA1_c00690 0.38 -1.3 69,322 + PGA1_c00690 0.38 +0.9 69,322 + PGA1_c00690 0.38 -0.3 69,322 + PGA1_c00690 0.38 +0.8 69,322 + PGA1_c00690 0.38 +1.0 69,322 + PGA1_c00690 0.38 -1.4 69,322 + PGA1_c00690 0.38 -0.2 69,322 + PGA1_c00690 0.38 +0.1 69,322 + PGA1_c00690 0.38 -0.3 69,322 + PGA1_c00690 0.38 +1.4 69,323 + PGA1_c00690 0.38 +1.1 69,330 - PGA1_c00690 0.39 +2.4 69,330 - PGA1_c00690 0.39 +0.3 69,330 - PGA1_c00690 0.39 -0.4 69,330 - PGA1_c00690 0.39 +0.7 69,378 + PGA1_c00690 0.45 +1.1 69,419 + PGA1_c00690 0.49 -1.1 69,419 + PGA1_c00690 0.49 -0.8 69,426 + PGA1_c00690 0.50 -2.1 69,426 + PGA1_c00690 0.50 -2.3 69,426 + PGA1_c00690 0.50 +0.4 69,426 + PGA1_c00690 0.50 +1.4 69,427 - PGA1_c00690 0.50 +1.7 69,434 - PGA1_c00690 0.51 -1.6 69,434 - PGA1_c00690 0.51 -1.9 69,434 - PGA1_c00690 0.51 -2.1 69,434 - PGA1_c00690 0.51 +2.1 69,457 + PGA1_c00690 0.53 +2.9 69,457 + PGA1_c00690 0.53 +0.7 69,457 + PGA1_c00690 0.53 +1.0 69,457 + PGA1_c00690 0.53 +1.5 69,462 + PGA1_c00690 0.54 +0.7 69,465 - PGA1_c00690 0.54 -2.4 69,465 - PGA1_c00690 0.54 -2.8
Or see this region's nucleotide sequence