Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06220 and PGA1_c06230 are separated by 113 nucleotides PGA1_c06230 and PGA1_c06240 are separated by 319 nucleotides
PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774
_c06220
PGA1_c06230: PGA1_c06230 - putative protein Smf, at 637,888 to 639,126
_c06230
PGA1_c06240: PGA1_c06240 - protein TldD, at 639,446 to 640,867
_c06240
Position (kb) 637
638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 637.881 kb on - strand at 637.889 kb on - strand at 637.891 kb on + strand at 637.976 kb on + strand at 638.069 kb on + strand, within PGA1_c06230 at 638.100 kb on + strand, within PGA1_c06230 at 638.108 kb on - strand, within PGA1_c06230 at 638.120 kb on - strand, within PGA1_c06230 at 638.197 kb on + strand, within PGA1_c06230 at 638.267 kb on - strand, within PGA1_c06230 at 638.285 kb on - strand, within PGA1_c06230 at 638.293 kb on + strand, within PGA1_c06230 at 638.301 kb on - strand, within PGA1_c06230 at 638.339 kb on + strand, within PGA1_c06230 at 638.492 kb on + strand, within PGA1_c06230 at 638.492 kb on + strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.569 kb on - strand, within PGA1_c06230 at 638.569 kb on - strand, within PGA1_c06230 at 638.592 kb on + strand, within PGA1_c06230 at 638.652 kb on + strand, within PGA1_c06230 at 638.675 kb on + strand, within PGA1_c06230 at 638.677 kb on - strand, within PGA1_c06230 at 638.772 kb on - strand, within PGA1_c06230 at 638.785 kb on - strand, within PGA1_c06230 at 638.930 kb on + strand, within PGA1_c06230 at 638.954 kb on + strand, within PGA1_c06230 at 638.962 kb on - strand, within PGA1_c06230 at 638.977 kb on + strand, within PGA1_c06230 at 639.032 kb on + strand at 639.088 kb on - strand at 639.089 kb on + strand at 639.090 kb on - strand at 639.095 kb on - strand at 639.097 kb on - strand at 639.116 kb on - strand at 639.130 kb on - strand at 639.155 kb on + strand at 639.158 kb on - strand at 639.160 kb on + strand at 639.163 kb on + strand at 639.168 kb on - strand at 639.171 kb on + strand at 639.277 kb on + strand at 639.301 kb on + strand at 639.431 kb on - strand at 639.443 kb on + strand at 639.443 kb on + strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.479 kb on + strand at 639.515 kb on + strand at 639.516 kb on + strand at 639.516 kb on + strand at 639.551 kb on + strand at 639.624 kb on + strand, within PGA1_c06240 at 639.632 kb on - strand, within PGA1_c06240 at 639.632 kb on - strand, within PGA1_c06240 at 639.672 kb on + strand, within PGA1_c06240 at 639.732 kb on + strand, within PGA1_c06240 at 639.753 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.811 kb on - strand, within PGA1_c06240 at 639.868 kb on - strand, within PGA1_c06240 at 639.918 kb on + strand, within PGA1_c06240 at 640.038 kb on + strand, within PGA1_c06240 at 640.090 kb on + strand, within PGA1_c06240
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 637,881 - -0.6 637,889 - +1.2 637,891 + +0.6 637,976 + +4.1 638,069 + PGA1_c06230 0.15 +0.8 638,100 + PGA1_c06230 0.17 +1.6 638,108 - PGA1_c06230 0.18 -0.4 638,120 - PGA1_c06230 0.19 +1.2 638,197 + PGA1_c06230 0.25 -1.1 638,267 - PGA1_c06230 0.31 -1.3 638,285 - PGA1_c06230 0.32 -0.8 638,293 + PGA1_c06230 0.33 +2.5 638,301 - PGA1_c06230 0.33 +3.7 638,339 + PGA1_c06230 0.36 -0.2 638,492 + PGA1_c06230 0.49 -1.9 638,492 + PGA1_c06230 0.49 +1.7 638,531 - PGA1_c06230 0.52 +3.6 638,531 - PGA1_c06230 0.52 +2.1 638,531 - PGA1_c06230 0.52 +0.4 638,531 - PGA1_c06230 0.52 +0.9 638,569 - PGA1_c06230 0.55 +0.1 638,569 - PGA1_c06230 0.55 +1.2 638,592 + PGA1_c06230 0.57 +3.2 638,652 + PGA1_c06230 0.62 -1.9 638,675 + PGA1_c06230 0.64 +0.4 638,677 - PGA1_c06230 0.64 -0.1 638,772 - PGA1_c06230 0.71 +0.3 638,785 - PGA1_c06230 0.72 +0.2 638,930 + PGA1_c06230 0.84 -1.2 638,954 + PGA1_c06230 0.86 +0.9 638,962 - PGA1_c06230 0.87 -0.3 638,977 + PGA1_c06230 0.88 -1.4 639,032 + -2.2 639,088 - +3.7 639,089 + +1.9 639,090 - -0.6 639,095 - +1.4 639,097 - +5.2 639,116 - +0.7 639,130 - +2.4 639,155 + +0.4 639,158 - -0.6 639,160 + +1.9 639,163 + +0.7 639,168 - +0.4 639,171 + +3.2 639,277 + +1.0 639,301 + -1.4 639,431 - -1.4 639,443 + +0.2 639,443 + -0.8 639,451 - +1.2 639,451 - -2.5 639,451 - -2.4 639,451 - +1.8 639,451 - +3.0 639,479 + -3.2 639,515 + -0.4 639,516 + -2.6 639,516 + -0.2 639,551 + +0.8 639,624 + PGA1_c06240 0.13 -1.5 639,632 - PGA1_c06240 0.13 -1.1 639,632 - PGA1_c06240 0.13 +1.3 639,672 + PGA1_c06240 0.16 -0.1 639,732 + PGA1_c06240 0.20 -2.1 639,753 + PGA1_c06240 0.22 +0.1 639,790 + PGA1_c06240 0.24 +2.8 639,790 + PGA1_c06240 0.24 +1.6 639,790 + PGA1_c06240 0.24 -1.7 639,790 + PGA1_c06240 0.24 -2.0 639,790 + PGA1_c06240 0.24 -2.5 639,798 - PGA1_c06240 0.25 +0.8 639,798 - PGA1_c06240 0.25 -1.4 639,798 - PGA1_c06240 0.25 +3.4 639,798 - PGA1_c06240 0.25 +1.4 639,811 - PGA1_c06240 0.26 +2.7 639,868 - PGA1_c06240 0.30 -1.1 639,918 + PGA1_c06240 0.33 +2.8 640,038 + PGA1_c06240 0.42 +0.3 640,090 + PGA1_c06240 0.45 -0.8
Or see this region's nucleotide sequence