Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05540 and PGA1_c05550 are separated by 342 nucleotides PGA1_c05550 and PGA1_c05560 are separated by 623 nucleotides
PGA1_c05540: PGA1_c05540 - transcriptional regulator, IclR family, at 565,964 to 566,782
_c05540
PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576
_c05550
PGA1_c05560: PGA1_c05560 - glycine cleavage system protein GcvH, at 569,200 to 569,562
_c05560
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 566.126 kb on + strand, within PGA1_c05540 at 566.146 kb on + strand, within PGA1_c05540 at 566.156 kb on - strand, within PGA1_c05540 at 566.158 kb on + strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.173 kb on - strand, within PGA1_c05540 at 566.181 kb on + strand, within PGA1_c05540 at 566.238 kb on + strand, within PGA1_c05540 at 566.296 kb on + strand, within PGA1_c05540 at 566.312 kb on + strand, within PGA1_c05540 at 566.312 kb on + strand, within PGA1_c05540 at 566.313 kb on + strand, within PGA1_c05540 at 566.400 kb on - strand, within PGA1_c05540 at 566.410 kb on - strand, within PGA1_c05540 at 566.434 kb on + strand, within PGA1_c05540 at 566.444 kb on - strand, within PGA1_c05540 at 566.456 kb on + strand, within PGA1_c05540 at 566.473 kb on - strand, within PGA1_c05540 at 566.513 kb on - strand, within PGA1_c05540 at 566.515 kb on + strand, within PGA1_c05540 at 566.532 kb on - strand, within PGA1_c05540 at 566.550 kb on - strand, within PGA1_c05540 at 566.606 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.615 kb on - strand, within PGA1_c05540 at 566.615 kb on - strand, within PGA1_c05540 at 566.620 kb on - strand, within PGA1_c05540 at 566.644 kb on + strand, within PGA1_c05540 at 566.650 kb on + strand, within PGA1_c05540 at 566.675 kb on + strand, within PGA1_c05540 at 566.770 kb on - strand at 566.799 kb on + strand at 566.800 kb on + strand at 566.800 kb on + strand at 566.808 kb on - strand at 566.830 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.882 kb on + strand at 566.882 kb on + strand at 566.890 kb on - strand at 566.895 kb on - strand at 567.052 kb on - strand at 567.057 kb on - strand at 567.059 kb on - strand at 567.063 kb on + strand at 567.065 kb on + strand at 567.142 kb on - strand at 567.176 kb on + strand at 567.189 kb on - strand at 567.192 kb on + strand at 567.214 kb on + strand at 567.214 kb on + strand at 567.222 kb on - strand at 567.229 kb on + strand at 567.237 kb on + strand at 567.237 kb on - strand at 567.285 kb on - strand, within PGA1_c05550 at 567.299 kb on + strand, within PGA1_c05550 at 567.302 kb on - strand, within PGA1_c05550 at 567.354 kb on - strand, within PGA1_c05550 at 567.414 kb on + strand, within PGA1_c05550 at 567.475 kb on + strand, within PGA1_c05550 at 567.475 kb on + strand, within PGA1_c05550 at 567.475 kb on + strand, within PGA1_c05550 at 567.488 kb on + strand, within PGA1_c05550 at 567.536 kb on - strand, within PGA1_c05550 at 567.565 kb on - strand, within PGA1_c05550 at 567.653 kb on + strand, within PGA1_c05550 at 567.653 kb on + strand, within PGA1_c05550 at 567.656 kb on - strand, within PGA1_c05550 at 567.699 kb on + strand, within PGA1_c05550 at 567.710 kb on + strand, within PGA1_c05550 at 567.739 kb on + strand, within PGA1_c05550 at 567.751 kb on + strand, within PGA1_c05550 at 567.917 kb on - strand, within PGA1_c05550 at 567.920 kb on - strand, within PGA1_c05550 at 567.927 kb on - strand, within PGA1_c05550 at 567.961 kb on + strand, within PGA1_c05550 at 567.961 kb on + strand, within PGA1_c05550 at 567.978 kb on - strand, within PGA1_c05550 at 567.979 kb on - strand, within PGA1_c05550 at 568.020 kb on - strand, within PGA1_c05550 at 568.070 kb on + strand, within PGA1_c05550 at 568.083 kb on - strand, within PGA1_c05550 at 568.108 kb on + strand, within PGA1_c05550 at 568.139 kb on + strand, within PGA1_c05550 at 568.147 kb on - strand, within PGA1_c05550 at 568.147 kb on - strand, within PGA1_c05550 at 568.242 kb on - strand, within PGA1_c05550 at 568.277 kb on + strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.418 kb on + strand, within PGA1_c05550 at 568.440 kb on - strand at 568.446 kb on - strand at 568.464 kb on + strand at 568.466 kb on + strand at 568.474 kb on + strand at 568.487 kb on + strand at 568.496 kb on - strand at 568.501 kb on + strand at 568.504 kb on - strand at 568.507 kb on + strand at 568.515 kb on - strand at 568.515 kb on - strand at 568.533 kb on + strand at 568.541 kb on - strand at 568.776 kb on + strand at 568.783 kb on + strand at 568.790 kb on - strand at 568.808 kb on + strand at 568.829 kb on + strand at 568.837 kb on - strand at 568.845 kb on + strand at 568.874 kb on - strand at 568.892 kb on + strand at 568.892 kb on + strand at 568.900 kb on - strand at 568.931 kb on + strand at 568.999 kb on - strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.049 kb on + strand at 569.049 kb on + strand at 569.052 kb on - strand at 569.054 kb on + strand at 569.057 kb on - strand at 569.068 kb on + strand at 569.073 kb on + strand at 569.076 kb on - strand at 569.081 kb on - strand at 569.147 kb on + strand at 569.324 kb on + strand, within PGA1_c05560 at 569.366 kb on - strand, within PGA1_c05560 at 569.375 kb on - strand, within PGA1_c05560 at 569.469 kb on - strand, within PGA1_c05560 at 569.490 kb on + strand, within PGA1_c05560 at 569.498 kb on - strand, within PGA1_c05560 at 569.506 kb on - strand, within PGA1_c05560 at 569.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 566,126 + PGA1_c05540 0.20 +0.9 566,146 + PGA1_c05540 0.22 +1.1 566,156 - PGA1_c05540 0.23 +0.1 566,158 + PGA1_c05540 0.24 -0.5 566,166 - PGA1_c05540 0.25 +0.5 566,166 - PGA1_c05540 0.25 -1.3 566,166 - PGA1_c05540 0.25 +0.1 566,166 - PGA1_c05540 0.25 +3.6 566,166 - PGA1_c05540 0.25 +0.5 566,166 - PGA1_c05540 0.25 +1.0 566,173 - PGA1_c05540 0.26 -0.7 566,181 + PGA1_c05540 0.26 +0.9 566,238 + PGA1_c05540 0.33 +1.7 566,296 + PGA1_c05540 0.41 +1.2 566,312 + PGA1_c05540 0.42 +1.9 566,312 + PGA1_c05540 0.42 -1.7 566,313 + PGA1_c05540 0.43 +1.5 566,400 - PGA1_c05540 0.53 +1.6 566,410 - PGA1_c05540 0.54 -1.0 566,434 + PGA1_c05540 0.57 -0.5 566,444 - PGA1_c05540 0.59 -1.6 566,456 + PGA1_c05540 0.60 +0.1 566,473 - PGA1_c05540 0.62 -2.0 566,513 - PGA1_c05540 0.67 +0.5 566,515 + PGA1_c05540 0.67 +0.3 566,532 - PGA1_c05540 0.69 -1.5 566,550 - PGA1_c05540 0.72 -0.7 566,606 + PGA1_c05540 0.78 -0.2 566,612 + PGA1_c05540 0.79 -1.1 566,612 + PGA1_c05540 0.79 +0.1 566,612 + PGA1_c05540 0.79 -1.4 566,612 + PGA1_c05540 0.79 -0.9 566,612 + PGA1_c05540 0.79 +0.9 566,612 + PGA1_c05540 0.79 +1.8 566,612 + PGA1_c05540 0.79 +2.1 566,612 + PGA1_c05540 0.79 -1.4 566,615 - PGA1_c05540 0.79 +0.2 566,615 - PGA1_c05540 0.79 +0.7 566,620 - PGA1_c05540 0.80 +0.6 566,644 + PGA1_c05540 0.83 -2.6 566,650 + PGA1_c05540 0.84 -1.9 566,675 + PGA1_c05540 0.87 -0.5 566,770 - -0.7 566,799 + -0.9 566,800 + +0.1 566,800 + -1.4 566,808 - -2.1 566,830 + -0.1 566,831 + -0.7 566,831 + +2.6 566,831 + -2.2 566,831 + -0.5 566,882 + -0.5 566,882 + -1.8 566,890 - +2.5 566,895 - +0.5 567,052 - +2.7 567,057 - +0.2 567,059 - +2.9 567,063 + +1.8 567,065 + -1.8 567,142 - -0.7 567,176 + +0.1 567,189 - +1.3 567,192 + -0.5 567,214 + +2.2 567,214 + -1.3 567,222 - -0.9 567,229 + -0.5 567,237 + +1.2 567,237 - -2.3 567,285 - PGA1_c05550 0.11 +1.6 567,299 + PGA1_c05550 0.12 -1.2 567,302 - PGA1_c05550 0.12 -1.6 567,354 - PGA1_c05550 0.16 +1.5 567,414 + PGA1_c05550 0.20 -0.7 567,475 + PGA1_c05550 0.24 +1.7 567,475 + PGA1_c05550 0.24 +2.7 567,475 + PGA1_c05550 0.24 -0.9 567,488 + PGA1_c05550 0.25 +3.2 567,536 - PGA1_c05550 0.28 +1.0 567,565 - PGA1_c05550 0.30 -1.9 567,653 + PGA1_c05550 0.36 -1.6 567,653 + PGA1_c05550 0.36 +1.1 567,656 - PGA1_c05550 0.37 -0.0 567,699 + PGA1_c05550 0.40 +0.4 567,710 + PGA1_c05550 0.40 -2.1 567,739 + PGA1_c05550 0.42 +1.1 567,751 + PGA1_c05550 0.43 -1.9 567,917 - PGA1_c05550 0.55 +2.7 567,920 - PGA1_c05550 0.55 -1.9 567,927 - PGA1_c05550 0.55 -0.3 567,961 + PGA1_c05550 0.58 +0.4 567,961 + PGA1_c05550 0.58 +0.8 567,978 - PGA1_c05550 0.59 +3.0 567,979 - PGA1_c05550 0.59 -1.4 568,020 - PGA1_c05550 0.62 +4.0 568,070 + PGA1_c05550 0.65 +2.0 568,083 - PGA1_c05550 0.66 +2.3 568,108 + PGA1_c05550 0.68 -0.2 568,139 + PGA1_c05550 0.70 -0.1 568,147 - PGA1_c05550 0.70 +2.1 568,147 - PGA1_c05550 0.70 -1.7 568,242 - PGA1_c05550 0.77 +1.9 568,277 + PGA1_c05550 0.79 +0.5 568,321 - PGA1_c05550 0.82 +2.5 568,321 - PGA1_c05550 0.82 -0.3 568,418 + PGA1_c05550 0.89 -0.1 568,440 - +1.2 568,446 - -1.1 568,464 + +1.5 568,466 + +0.2 568,474 + +2.7 568,487 + +0.8 568,496 - -1.2 568,501 + -1.3 568,504 - -1.9 568,507 + +0.1 568,515 - -0.1 568,515 - +0.5 568,533 + +2.7 568,541 - -0.9 568,776 + -1.1 568,783 + -0.5 568,790 - +1.4 568,808 + -1.1 568,829 + +1.1 568,837 - -1.1 568,845 + +3.0 568,874 - +4.6 568,892 + +4.9 568,892 + +1.3 568,900 - -0.9 568,931 + +2.6 568,999 - -1.0 569,044 + +0.6 569,044 + +3.2 569,044 + -0.5 569,044 + +0.7 569,049 + +2.8 569,049 + +2.9 569,052 - -1.1 569,054 + -1.7 569,057 - -1.0 569,068 + -1.9 569,073 + -1.4 569,076 - -1.2 569,081 - +0.5 569,147 + -1.4 569,324 + PGA1_c05560 0.34 -0.0 569,366 - PGA1_c05560 0.46 +0.5 569,375 - PGA1_c05560 0.48 +2.0 569,469 - PGA1_c05560 0.74 +3.5 569,490 + PGA1_c05560 0.80 +2.0 569,498 - PGA1_c05560 0.82 +2.1 569,506 - PGA1_c05560 0.84 -1.5 569,573 - +0.1
Or see this region's nucleotide sequence