Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05310

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05300 and PGA1_c05310 are separated by 18 nucleotidesPGA1_c05310 and PGA1_c05320 overlap by 4 nucleotides PGA1_c05300: PGA1_c05300 - putative glycosyl transferase, at 526,502 to 527,719 _c05300 PGA1_c05310: PGA1_c05310 - putative glycosyl transferase, at 527,738 to 528,580 _c05310 PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147 _c05320 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 526.752 kb on - strand, within PGA1_c05300at 526.759 kb on + strand, within PGA1_c05300at 526.925 kb on + strand, within PGA1_c05300at 526.932 kb on - strand, within PGA1_c05300at 526.939 kb on + strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 527.083 kb on - strand, within PGA1_c05300at 527.085 kb on + strand, within PGA1_c05300at 527.093 kb on + strand, within PGA1_c05300at 527.115 kb on + strand, within PGA1_c05300at 527.124 kb on - strand, within PGA1_c05300at 527.154 kb on - strand, within PGA1_c05300at 527.226 kb on - strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.258 kb on - strand, within PGA1_c05300at 527.277 kb on + strand, within PGA1_c05300at 527.320 kb on + strand, within PGA1_c05300at 527.371 kb on + strand, within PGA1_c05300at 527.376 kb on + strand, within PGA1_c05300at 527.379 kb on - strand, within PGA1_c05300at 527.379 kb on - strand, within PGA1_c05300at 527.384 kb on - strand, within PGA1_c05300at 527.534 kb on - strand, within PGA1_c05300at 527.578 kb on - strand, within PGA1_c05300at 527.590 kb on + strand, within PGA1_c05300at 527.618 kb on - strandat 527.636 kb on + strandat 527.686 kb on + strandat 527.729 kb on + strandat 527.731 kb on + strandat 527.827 kb on - strand, within PGA1_c05310at 527.850 kb on - strand, within PGA1_c05310at 527.862 kb on - strand, within PGA1_c05310at 527.866 kb on + strand, within PGA1_c05310at 527.876 kb on + strand, within PGA1_c05310at 527.891 kb on + strand, within PGA1_c05310at 527.953 kb on + strand, within PGA1_c05310at 528.030 kb on + strand, within PGA1_c05310at 528.085 kb on - strand, within PGA1_c05310at 528.096 kb on + strand, within PGA1_c05310at 528.122 kb on + strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.146 kb on + strand, within PGA1_c05310at 528.156 kb on + strand, within PGA1_c05310at 528.159 kb on - strand, within PGA1_c05310at 528.164 kb on - strand, within PGA1_c05310at 528.172 kb on + strand, within PGA1_c05310at 528.177 kb on - strand, within PGA1_c05310at 528.198 kb on + strand, within PGA1_c05310at 528.240 kb on + strand, within PGA1_c05310at 528.240 kb on - strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.257 kb on + strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.382 kb on + strand, within PGA1_c05310at 528.390 kb on + strand, within PGA1_c05310at 528.424 kb on + strand, within PGA1_c05310at 528.441 kb on + strand, within PGA1_c05310at 528.522 kb on + strandat 528.545 kb on - strandat 528.637 kb on + strandat 528.637 kb on + strandat 528.669 kb on - strandat 528.688 kb on - strandat 528.692 kb on + strandat 528.702 kb on + strandat 528.710 kb on - strandat 528.710 kb on - strandat 528.725 kb on + strandat 528.725 kb on + strandat 528.791 kb on - strandat 528.804 kb on + strandat 528.854 kb on - strand, within PGA1_c05320at 528.884 kb on + strand, within PGA1_c05320at 528.888 kb on + strand, within PGA1_c05320at 528.892 kb on - strand, within PGA1_c05320at 528.951 kb on + strand, within PGA1_c05320at 528.996 kb on + strand, within PGA1_c05320at 529.011 kb on - strand, within PGA1_c05320at 529.021 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.036 kb on - strand, within PGA1_c05320at 529.126 kb on - strand, within PGA1_c05320at 529.171 kb on - strand, within PGA1_c05320at 529.171 kb on - strand, within PGA1_c05320at 529.245 kb on - strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.298 kb on - strand, within PGA1_c05320at 529.303 kb on - strand, within PGA1_c05320at 529.303 kb on - strand, within PGA1_c05320at 529.336 kb on - strand, within PGA1_c05320at 529.336 kb on - strand, within PGA1_c05320at 529.385 kb on + strand, within PGA1_c05320at 529.439 kb on - strand, within PGA1_c05320at 529.454 kb on + strand, within PGA1_c05320at 529.457 kb on - strand, within PGA1_c05320

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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526,752 - PGA1_c05300 0.21 -1.3
526,759 + PGA1_c05300 0.21 +1.5
526,925 + PGA1_c05300 0.35 -2.3
526,932 - PGA1_c05300 0.35 +2.2
526,939 + PGA1_c05300 0.36 +2.2
526,988 - PGA1_c05300 0.40 +2.0
526,988 - PGA1_c05300 0.40 -0.5
527,083 - PGA1_c05300 0.48 +2.1
527,085 + PGA1_c05300 0.48 -0.3
527,093 + PGA1_c05300 0.49 +0.2
527,115 + PGA1_c05300 0.50 -1.8
527,124 - PGA1_c05300 0.51 -1.3
527,154 - PGA1_c05300 0.54 -2.1
527,226 - PGA1_c05300 0.59 -1.9
527,250 + PGA1_c05300 0.61 -2.3
527,250 + PGA1_c05300 0.61 +2.4
527,258 - PGA1_c05300 0.62 -2.0
527,277 + PGA1_c05300 0.64 -1.6
527,320 + PGA1_c05300 0.67 -0.7
527,371 + PGA1_c05300 0.71 -1.0
527,376 + PGA1_c05300 0.72 -0.9
527,379 - PGA1_c05300 0.72 +1.3
527,379 - PGA1_c05300 0.72 -2.6
527,384 - PGA1_c05300 0.72 +0.8
527,534 - PGA1_c05300 0.85 -2.1
527,578 - PGA1_c05300 0.88 +0.4
527,590 + PGA1_c05300 0.89 -0.9
527,618 - -0.9
527,636 + +2.2
527,686 + +2.6
527,729 + -0.6
527,731 + -1.9
527,827 - PGA1_c05310 0.11 -0.9
527,850 - PGA1_c05310 0.13 -1.3
527,862 - PGA1_c05310 0.15 -2.4
527,866 + PGA1_c05310 0.15 -1.3
527,876 + PGA1_c05310 0.16 +1.1
527,891 + PGA1_c05310 0.18 -1.2
527,953 + PGA1_c05310 0.26 +0.1
528,030 + PGA1_c05310 0.35 +0.4
528,085 - PGA1_c05310 0.41 +0.0
528,096 + PGA1_c05310 0.42 -1.5
528,122 + PGA1_c05310 0.46 +0.1
528,132 - PGA1_c05310 0.47 +1.7
528,132 - PGA1_c05310 0.47 +1.7
528,146 + PGA1_c05310 0.48 +0.4
528,156 + PGA1_c05310 0.50 +1.0
528,159 - PGA1_c05310 0.50 -1.5
528,164 - PGA1_c05310 0.51 -1.6
528,172 + PGA1_c05310 0.51 -1.1
528,177 - PGA1_c05310 0.52 -0.5
528,198 + PGA1_c05310 0.55 -1.3
528,240 + PGA1_c05310 0.60 +0.7
528,240 - PGA1_c05310 0.60 -0.5
528,252 + PGA1_c05310 0.61 +2.4
528,252 + PGA1_c05310 0.61 +1.1
528,257 + PGA1_c05310 0.62 -0.2
528,260 - PGA1_c05310 0.62 +2.0
528,260 - PGA1_c05310 0.62 +1.1
528,260 - PGA1_c05310 0.62 -3.3
528,313 - PGA1_c05310 0.68 -1.0
528,313 - PGA1_c05310 0.68 +1.1
528,363 + PGA1_c05310 0.74 -2.1
528,363 + PGA1_c05310 0.74 +1.4
528,363 + PGA1_c05310 0.74 +0.2
528,363 + PGA1_c05310 0.74 -0.9
528,371 - PGA1_c05310 0.75 -1.0
528,371 - PGA1_c05310 0.75 +1.2
528,371 - PGA1_c05310 0.75 +1.1
528,382 + PGA1_c05310 0.76 -1.4
528,390 + PGA1_c05310 0.77 +0.2
528,424 + PGA1_c05310 0.81 -1.8
528,441 + PGA1_c05310 0.83 -1.4
528,522 + -0.5
528,545 - -3.2
528,637 + +0.5
528,637 + -0.3
528,669 - -3.6
528,688 - +0.6
528,692 + -0.5
528,702 + +2.9
528,710 - +2.2
528,710 - -2.1
528,725 + +1.1
528,725 + -1.5
528,791 - -1.7
528,804 + -1.5
528,854 - PGA1_c05320 0.11 -0.1
528,884 + PGA1_c05320 0.12 +0.1
528,888 + PGA1_c05320 0.12 -1.3
528,892 - PGA1_c05320 0.12 +0.5
528,951 + PGA1_c05320 0.15 -0.0
528,996 + PGA1_c05320 0.16 +1.2
529,011 - PGA1_c05320 0.17 -1.4
529,021 + PGA1_c05320 0.17 -1.9
529,028 + PGA1_c05320 0.18 -2.3
529,028 + PGA1_c05320 0.18 +0.1
529,028 + PGA1_c05320 0.18 -0.5
529,036 - PGA1_c05320 0.18 -1.8
529,126 - PGA1_c05320 0.21 -1.9
529,171 - PGA1_c05320 0.23 -1.1
529,171 - PGA1_c05320 0.23 -1.8
529,245 - PGA1_c05320 0.26 -2.3
529,295 + PGA1_c05320 0.28 -0.4
529,295 + PGA1_c05320 0.28 -1.8
529,295 + PGA1_c05320 0.28 +1.5
529,298 - PGA1_c05320 0.28 +3.1
529,303 - PGA1_c05320 0.28 +1.1
529,303 - PGA1_c05320 0.28 -1.4
529,336 - PGA1_c05320 0.30 +0.4
529,336 - PGA1_c05320 0.30 +1.8
529,385 + PGA1_c05320 0.31 +1.0
529,439 - PGA1_c05320 0.34 +0.9
529,454 + PGA1_c05320 0.34 -0.2
529,457 - PGA1_c05320 0.34 -1.9

Or see this region's nucleotide sequence