Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04710 and PGA1_c04720 are separated by 205 nucleotides PGA1_c04720 and PGA1_c04730 are separated by 11 nucleotides PGA1_c04730 and PGA1_c04740 are separated by 153 nucleotides
PGA1_c04710: PGA1_c04710 - (dimethylallyl)adenosine tRNA methylthiotransferase MiaB, at 463,081 to 464,403
_c04710
PGA1_c04720: PGA1_c04720 - outer membrane protein OmpA-domain containing protein, at 464,609 to 465,160
_c04720
PGA1_c04730: PGA1_c04730 - hypothetical protein, at 465,172 to 465,474
_c04730
PGA1_c04740: PGA1_c04740 - phoH-like protein, at 465,628 to 466,635
_c04740
Position (kb) 465
466 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 464.206 kb on + strand, within PGA1_c04710 at 464.214 kb on - strand, within PGA1_c04710 at 464.214 kb on - strand, within PGA1_c04710 at 464.216 kb on + strand, within PGA1_c04710 at 464.224 kb on - strand, within PGA1_c04710 at 464.286 kb on - strand at 464.294 kb on + strand at 464.355 kb on + strand at 464.530 kb on - strand at 464.530 kb on - strand at 464.530 kb on - strand at 464.533 kb on + strand at 464.533 kb on + strand at 464.541 kb on - strand at 464.541 kb on - strand at 464.541 kb on - strand at 464.556 kb on + strand at 464.577 kb on + strand at 464.577 kb on + strand at 464.579 kb on - strand at 464.584 kb on - strand at 464.599 kb on + strand at 464.607 kb on - strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.666 kb on - strand, within PGA1_c04720 at 464.666 kb on - strand, within PGA1_c04720 at 464.688 kb on + strand, within PGA1_c04720 at 464.696 kb on - strand, within PGA1_c04720 at 464.717 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.757 kb on - strand, within PGA1_c04720 at 464.778 kb on + strand, within PGA1_c04720 at 464.833 kb on + strand, within PGA1_c04720 at 464.841 kb on + strand, within PGA1_c04720 at 464.868 kb on - strand, within PGA1_c04720 at 464.897 kb on + strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.976 kb on + strand, within PGA1_c04720 at 464.984 kb on - strand, within PGA1_c04720 at 465.025 kb on + strand, within PGA1_c04720 at 465.057 kb on + strand, within PGA1_c04720 at 465.065 kb on - strand, within PGA1_c04720 at 465.070 kb on + strand, within PGA1_c04720 at 465.078 kb on - strand, within PGA1_c04720 at 465.130 kb on - strand at 465.154 kb on + strand at 465.162 kb on - strand at 465.162 kb on - strand at 465.164 kb on + strand at 465.195 kb on + strand at 465.201 kb on - strand at 465.267 kb on + strand, within PGA1_c04730 at 465.282 kb on - strand, within PGA1_c04730 at 465.287 kb on - strand, within PGA1_c04730 at 465.350 kb on + strand, within PGA1_c04730 at 465.401 kb on + strand, within PGA1_c04730 at 465.455 kb on + strand at 465.473 kb on + strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.483 kb on + strand at 465.491 kb on - strand at 465.517 kb on + strand at 465.574 kb on - strand at 465.574 kb on - strand at 465.676 kb on - strand at 465.853 kb on + strand, within PGA1_c04740 at 465.872 kb on - strand, within PGA1_c04740 at 465.881 kb on + strand, within PGA1_c04740 at 465.889 kb on - strand, within PGA1_c04740 at 465.928 kb on - strand, within PGA1_c04740 at 465.941 kb on - strand, within PGA1_c04740 at 465.960 kb on + strand, within PGA1_c04740 at 465.984 kb on - strand, within PGA1_c04740 at 466.008 kb on + strand, within PGA1_c04740 at 466.080 kb on + strand, within PGA1_c04740 at 466.094 kb on + strand, within PGA1_c04740 at 466.151 kb on + strand, within PGA1_c04740 at 466.174 kb on + strand, within PGA1_c04740 at 466.253 kb on - strand, within PGA1_c04740 at 466.311 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.371 kb on + strand, within PGA1_c04740 at 466.436 kb on - strand, within PGA1_c04740 at 466.457 kb on - strand, within PGA1_c04740 at 466.469 kb on + strand, within PGA1_c04740
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 464,206 + PGA1_c04710 0.85 -1.5 464,214 - PGA1_c04710 0.86 -1.8 464,214 - PGA1_c04710 0.86 +0.9 464,216 + PGA1_c04710 0.86 +1.7 464,224 - PGA1_c04710 0.86 -1.6 464,286 - -1.4 464,294 + -3.8 464,355 + -0.5 464,530 - +1.1 464,530 - -1.3 464,530 - +0.9 464,533 + +1.5 464,533 + +0.4 464,541 - +1.8 464,541 - -1.6 464,541 - +2.3 464,556 + -0.3 464,577 + +1.3 464,577 + -1.3 464,579 - +1.5 464,584 - +2.7 464,599 + +0.1 464,607 - +0.5 464,630 + +2.7 464,630 + -1.0 464,630 + +2.3 464,630 + -2.1 464,638 - +3.3 464,638 - +1.5 464,638 - -0.5 464,666 - PGA1_c04720 0.10 +2.2 464,666 - PGA1_c04720 0.10 -2.4 464,688 + PGA1_c04720 0.14 +1.7 464,696 - PGA1_c04720 0.16 -2.6 464,717 - PGA1_c04720 0.20 +1.0 464,730 - PGA1_c04720 0.22 -0.9 464,730 - PGA1_c04720 0.22 +2.2 464,757 - PGA1_c04720 0.27 -1.1 464,778 + PGA1_c04720 0.31 +0.0 464,833 + PGA1_c04720 0.41 +1.5 464,841 + PGA1_c04720 0.42 +1.2 464,868 - PGA1_c04720 0.47 -3.4 464,897 + PGA1_c04720 0.52 -2.6 464,905 - PGA1_c04720 0.54 +2.9 464,905 - PGA1_c04720 0.54 -0.3 464,905 - PGA1_c04720 0.54 -1.1 464,905 - PGA1_c04720 0.54 -0.9 464,905 - PGA1_c04720 0.54 -2.9 464,976 + PGA1_c04720 0.66 +1.7 464,984 - PGA1_c04720 0.68 +0.4 465,025 + PGA1_c04720 0.75 +0.4 465,057 + PGA1_c04720 0.81 +0.1 465,065 - PGA1_c04720 0.83 +1.0 465,070 + PGA1_c04720 0.84 +1.4 465,078 - PGA1_c04720 0.85 -2.2 465,130 - -1.2 465,154 + -1.9 465,162 - -0.9 465,162 - -0.7 465,164 + +1.7 465,195 + -2.9 465,201 - +0.2 465,267 + PGA1_c04730 0.31 -2.7 465,282 - PGA1_c04730 0.36 -0.7 465,287 - PGA1_c04730 0.38 +1.4 465,350 + PGA1_c04730 0.59 +2.1 465,401 + PGA1_c04730 0.76 -3.2 465,455 + +1.2 465,473 + +0.6 465,481 - +0.2 465,481 - +1.5 465,481 - -2.4 465,481 - -1.8 465,483 + -1.4 465,491 - +1.0 465,517 + +0.1 465,574 - +0.2 465,574 - +1.3 465,676 - -2.2 465,853 + PGA1_c04740 0.22 +0.1 465,872 - PGA1_c04740 0.24 -0.9 465,881 + PGA1_c04740 0.25 +1.2 465,889 - PGA1_c04740 0.26 -2.3 465,928 - PGA1_c04740 0.30 +0.1 465,941 - PGA1_c04740 0.31 -0.3 465,960 + PGA1_c04740 0.33 -2.6 465,984 - PGA1_c04740 0.35 -2.1 466,008 + PGA1_c04740 0.38 +1.8 466,080 + PGA1_c04740 0.45 -1.6 466,094 + PGA1_c04740 0.46 -0.1 466,151 + PGA1_c04740 0.52 +2.9 466,174 + PGA1_c04740 0.54 +1.8 466,253 - PGA1_c04740 0.62 -2.9 466,311 + PGA1_c04740 0.68 +1.1 466,343 + PGA1_c04740 0.71 +0.9 466,343 + PGA1_c04740 0.71 -1.1 466,353 + PGA1_c04740 0.72 -1.2 466,353 + PGA1_c04740 0.72 -2.2 466,353 + PGA1_c04740 0.72 +0.3 466,353 + PGA1_c04740 0.72 -0.3 466,361 - PGA1_c04740 0.73 -1.7 466,361 - PGA1_c04740 0.73 -1.9 466,361 - PGA1_c04740 0.73 -2.1 466,361 - PGA1_c04740 0.73 -1.9 466,371 + PGA1_c04740 0.74 +0.5 466,436 - PGA1_c04740 0.80 -1.5 466,457 - PGA1_c04740 0.82 +0.2 466,469 + PGA1_c04740 0.83 -1.8
Or see this region's nucleotide sequence