Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03980 and PGA1_c03990 are separated by 64 nucleotides PGA1_c03990 and PGA1_c04000 overlap by 11 nucleotides PGA1_c04000 and PGA1_c04010 are separated by 162 nucleotides PGA1_c04010 and PGA1_c04020 are separated by 86 nucleotides
PGA1_c03980: PGA1_c03980 - putative acetyltransferase, at 385,611 to 386,027
_c03980
PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688
_c03990
PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241
_c04000
PGA1_c04010: PGA1_c04010 - putative universal stress protein, at 387,404 to 387,859
_c04010
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
Position (kb) 386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 385.685 kb on + strand, within PGA1_c03980 at 385.693 kb on - strand, within PGA1_c03980 at 385.726 kb on + strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.838 kb on + strand, within PGA1_c03980 at 385.852 kb on + strand, within PGA1_c03980 at 385.858 kb on + strand, within PGA1_c03980 at 385.872 kb on + strand, within PGA1_c03980 at 385.934 kb on + strand, within PGA1_c03980 at 385.961 kb on - strand, within PGA1_c03980 at 386.021 kb on + strand at 386.024 kb on - strand at 386.071 kb on + strand at 386.073 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.341 kb on + strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.381 kb on - strand at 387.514 kb on - strand, within PGA1_c04010 at 387.601 kb on - strand, within PGA1_c04010 at 387.629 kb on + strand, within PGA1_c04010 at 387.828 kb on + strand at 387.875 kb on - strand at 387.883 kb on - strand at 387.901 kb on + strand at 387.912 kb on + strand at 387.917 kb on - strand at 387.971 kb on + strand at 387.973 kb on - strand at 388.147 kb on - strand, within PGA1_c04020 at 388.212 kb on + strand, within PGA1_c04020
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 385,685 + PGA1_c03980 0.18 +2.1 385,693 - PGA1_c03980 0.20 +1.5 385,726 + PGA1_c03980 0.28 +0.2 385,836 - PGA1_c03980 0.54 +1.2 385,836 - PGA1_c03980 0.54 +1.4 385,838 + PGA1_c03980 0.54 -2.4 385,852 + PGA1_c03980 0.58 +0.5 385,858 + PGA1_c03980 0.59 +0.9 385,872 + PGA1_c03980 0.63 +0.9 385,934 + PGA1_c03980 0.77 -2.6 385,961 - PGA1_c03980 0.84 -2.2 386,021 + +1.8 386,024 - -1.0 386,071 + +3.4 386,073 - +1.8 387,259 - +0.3 387,259 - +0.5 387,259 - +1.1 387,259 - +2.7 387,341 + -0.9 387,349 - +4.1 387,349 - -1.3 387,349 - +1.0 387,349 - +1.0 387,381 - -1.3 387,514 - PGA1_c04010 0.24 +0.2 387,601 - PGA1_c04010 0.43 -0.6 387,629 + PGA1_c04010 0.49 +0.8 387,828 + -2.1 387,875 - +1.1 387,883 - -1.3 387,901 + +0.2 387,912 + -1.1 387,917 - +1.5 387,971 + -0.6 387,973 - +3.0 388,147 - PGA1_c04020 0.23 +2.7 388,212 + PGA1_c04020 0.31 +1.5
Or see this region's nucleotide sequence