Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides PGA1_262p02370 and PGA1_262p02380 overlap by 4 nucleotides PGA1_262p02380 and PGA1_262p02390 are separated by 81 nucleotides PGA1_262p02390 and PGA1_262p02400 are separated by 88 nucleotides
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
PGA1_262p02380: PGA1_262p02380 - putative histidine transport system permease protein HisM, at 259,807 to 260,583
_262p02380
PGA1_262p02390: PGA1_262p02390 - hypothetical protein, at 260,665 to 261,360
_262p02390
PGA1_262p02400: PGA1_262p02400 - hypothetical protein, at 261,449 to 261,649
_262p02400
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.282 kb on - strand, within PGA1_262p02370 at 259.329 kb on + strand, within PGA1_262p02370 at 259.524 kb on - strand, within PGA1_262p02370 at 259.533 kb on + strand, within PGA1_262p02370 at 259.568 kb on - strand, within PGA1_262p02370 at 259.809 kb on - strand at 259.916 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.986 kb on - strand, within PGA1_262p02380 at 260.030 kb on + strand, within PGA1_262p02380 at 260.105 kb on - strand, within PGA1_262p02380 at 260.114 kb on - strand, within PGA1_262p02380 at 260.171 kb on - strand, within PGA1_262p02380 at 260.174 kb on + strand, within PGA1_262p02380 at 260.174 kb on + strand, within PGA1_262p02380 at 260.182 kb on - strand, within PGA1_262p02380 at 260.200 kb on + strand, within PGA1_262p02380 at 260.258 kb on + strand, within PGA1_262p02380 at 260.264 kb on - strand, within PGA1_262p02380 at 260.304 kb on - strand, within PGA1_262p02380 at 260.330 kb on + strand at 260.393 kb on + strand, within PGA1_262p02380 at 260.436 kb on + strand, within PGA1_262p02380 at 260.453 kb on + strand, within PGA1_262p02380 at 260.461 kb on - strand, within PGA1_262p02380 at 260.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 258,876 - PGA1_262p02360 0.78 +0.2 258,877 - PGA1_262p02360 0.78 +1.2 258,931 - PGA1_262p02360 0.85 +0.5 259,041 - -1.4 259,046 - -0.4 259,095 - -0.4 259,274 + PGA1_262p02370 0.29 +3.0 259,274 + PGA1_262p02370 0.29 +1.0 259,274 + PGA1_262p02370 0.29 +0.6 259,282 - PGA1_262p02370 0.30 -0.0 259,329 + PGA1_262p02370 0.36 -1.8 259,524 - PGA1_262p02370 0.62 +1.0 259,533 + PGA1_262p02370 0.63 -2.3 259,568 - PGA1_262p02370 0.68 -0.0 259,809 - -0.5 259,916 + PGA1_262p02380 0.14 +2.3 259,985 + PGA1_262p02380 0.23 -1.0 259,985 + PGA1_262p02380 0.23 -1.4 259,986 - PGA1_262p02380 0.23 -0.8 260,030 + PGA1_262p02380 0.29 -1.4 260,105 - PGA1_262p02380 0.38 -0.4 260,114 - PGA1_262p02380 0.40 +0.5 260,171 - PGA1_262p02380 0.47 -0.6 260,174 + PGA1_262p02380 0.47 -0.8 260,174 + PGA1_262p02380 0.47 +2.1 260,182 - PGA1_262p02380 0.48 +2.7 260,200 + PGA1_262p02380 0.51 +0.8 260,258 + PGA1_262p02380 0.58 +0.7 260,264 - PGA1_262p02380 0.59 +3.6 260,304 - PGA1_262p02380 0.64 +1.3 260,330 + +0.4 260,393 + PGA1_262p02380 0.75 +0.6 260,436 + PGA1_262p02380 0.81 -0.8 260,453 + PGA1_262p02380 0.83 -1.5 260,461 - PGA1_262p02380 0.84 +1.3 260,632 - +1.0
Or see this region's nucleotide sequence