Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00360 and PGA1_c00370 are separated by 52 nucleotides PGA1_c00370 and PGA1_c00380 are separated by 44 nucleotides PGA1_c00380 and PGA1_c00390 are separated by 51 nucleotides
PGA1_c00360: PGA1_c00360 - oxygen-independent coproporphyrinogen III oxidase HemN, at 41,128 to 42,483
_c00360
PGA1_c00370: PGA1_c00370 - putative nnrU protein, at 42,536 to 43,231
_c00370
PGA1_c00380: PGA1_c00380 - putative maleylacetoacetate isomerase, at 43,276 to 43,962
_c00380
PGA1_c00390: PGA1_c00390 - glyoxalase-like protein, at 44,014 to 44,556
_c00390
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.544 kb on - strand, within PGA1_c00360 at 41.546 kb on + strand, within PGA1_c00360 at 41.560 kb on - strand, within PGA1_c00360 at 41.592 kb on + strand, within PGA1_c00360 at 41.593 kb on + strand, within PGA1_c00360 at 41.593 kb on + strand, within PGA1_c00360 at 41.601 kb on - strand, within PGA1_c00360 at 41.622 kb on + strand, within PGA1_c00360 at 41.627 kb on + strand, within PGA1_c00360 at 41.668 kb on + strand, within PGA1_c00360 at 41.676 kb on - strand, within PGA1_c00360 at 41.709 kb on + strand, within PGA1_c00360 at 41.717 kb on - strand, within PGA1_c00360 at 41.747 kb on + strand, within PGA1_c00360 at 41.777 kb on + strand, within PGA1_c00360 at 41.785 kb on - strand, within PGA1_c00360 at 41.794 kb on + strand, within PGA1_c00360 at 41.794 kb on + strand, within PGA1_c00360 at 41.813 kb on - strand, within PGA1_c00360 at 41.854 kb on + strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.990 kb on - strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 42.085 kb on - strand, within PGA1_c00360 at 42.143 kb on - strand, within PGA1_c00360 at 42.236 kb on - strand, within PGA1_c00360 at 42.248 kb on + strand, within PGA1_c00360 at 42.248 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.256 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.278 kb on - strand, within PGA1_c00360 at 42.281 kb on + strand, within PGA1_c00360 at 42.290 kb on - strand, within PGA1_c00360 at 42.325 kb on + strand, within PGA1_c00360 at 42.327 kb on - strand, within PGA1_c00360 at 42.331 kb on + strand, within PGA1_c00360 at 42.333 kb on - strand, within PGA1_c00360 at 42.336 kb on + strand, within PGA1_c00360 at 42.339 kb on - strand, within PGA1_c00360 at 42.341 kb on + strand, within PGA1_c00360 at 42.344 kb on - strand, within PGA1_c00360 at 42.347 kb on - strand, within PGA1_c00360 at 42.347 kb on - strand, within PGA1_c00360 at 42.349 kb on - strand at 42.375 kb on + strand at 42.383 kb on - strand at 42.388 kb on - strand at 42.402 kb on - strand at 42.404 kb on + strand at 42.410 kb on - strand at 42.420 kb on - strand at 42.421 kb on - strand at 42.422 kb on - strand at 42.422 kb on - strand at 42.430 kb on - strand at 42.501 kb on + strand at 42.501 kb on + strand at 42.511 kb on + strand at 42.511 kb on + strand at 42.511 kb on + strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.542 kb on + strand at 42.542 kb on + strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.558 kb on + strand at 42.591 kb on + strand at 42.622 kb on + strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.677 kb on + strand, within PGA1_c00370 at 42.720 kb on + strand, within PGA1_c00370 at 42.721 kb on - strand, within PGA1_c00370 at 42.749 kb on + strand, within PGA1_c00370 at 42.749 kb on + strand, within PGA1_c00370 at 42.757 kb on - strand, within PGA1_c00370 at 42.827 kb on + strand, within PGA1_c00370 at 42.860 kb on - strand, within PGA1_c00370 at 42.860 kb on - strand, within PGA1_c00370 at 42.865 kb on + strand, within PGA1_c00370 at 42.885 kb on + strand, within PGA1_c00370 at 42.893 kb on - strand, within PGA1_c00370 at 42.899 kb on - strand, within PGA1_c00370 at 42.901 kb on + strand, within PGA1_c00370 at 42.933 kb on + strand, within PGA1_c00370 at 42.939 kb on - strand, within PGA1_c00370 at 42.939 kb on - strand, within PGA1_c00370 at 42.964 kb on - strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.041 kb on - strand, within PGA1_c00370 at 43.098 kb on - strand, within PGA1_c00370 at 43.099 kb on - strand, within PGA1_c00370 at 43.213 kb on - strand at 43.249 kb on + strand at 43.267 kb on - strand at 43.306 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.357 kb on + strand, within PGA1_c00380 at 43.370 kb on - strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.405 kb on + strand, within PGA1_c00380 at 43.415 kb on + strand, within PGA1_c00380 at 43.418 kb on + strand, within PGA1_c00380 at 43.439 kb on - strand, within PGA1_c00380 at 43.452 kb on + strand, within PGA1_c00380 at 43.458 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.507 kb on + strand, within PGA1_c00380 at 43.507 kb on + strand, within PGA1_c00380 at 43.513 kb on - strand, within PGA1_c00380 at 43.528 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.600 kb on - strand, within PGA1_c00380 at 43.658 kb on + strand, within PGA1_c00380 at 43.666 kb on - strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.697 kb on + strand, within PGA1_c00380 at 43.734 kb on + strand, within PGA1_c00380 at 43.744 kb on + strand, within PGA1_c00380 at 43.752 kb on - strand, within PGA1_c00380 at 43.754 kb on + strand, within PGA1_c00380 at 43.770 kb on + strand, within PGA1_c00380 at 43.786 kb on + strand, within PGA1_c00380 at 43.803 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.827 kb on + strand, within PGA1_c00380 at 43.835 kb on - strand, within PGA1_c00380 at 43.837 kb on + strand, within PGA1_c00380 at 43.840 kb on - strand, within PGA1_c00380 at 43.842 kb on + strand, within PGA1_c00380 at 43.847 kb on + strand, within PGA1_c00380 at 43.894 kb on + strand at 43.902 kb on - strand at 43.904 kb on + strand at 43.919 kb on - strand at 43.986 kb on + strand at 43.999 kb on + strand at 43.999 kb on + strand at 44.002 kb on - strand at 44.007 kb on - strand at 44.013 kb on + strand at 44.019 kb on - strand at 44.044 kb on - strand at 44.066 kb on + strand at 44.073 kb on + strand, within PGA1_c00390 at 44.127 kb on - strand, within PGA1_c00390 at 44.150 kb on - strand, within PGA1_c00390 at 44.165 kb on - strand, within PGA1_c00390 at 44.171 kb on - strand, within PGA1_c00390 at 44.173 kb on - strand, within PGA1_c00390 at 44.229 kb on + strand, within PGA1_c00390 at 44.229 kb on + strand, within PGA1_c00390
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 41,536 + PGA1_c00360 0.30 +1.9 41,536 + PGA1_c00360 0.30 -1.0 41,536 + PGA1_c00360 0.30 -1.9 41,536 + PGA1_c00360 0.30 -1.1 41,536 + PGA1_c00360 0.30 -1.3 41,544 - PGA1_c00360 0.31 +1.2 41,546 + PGA1_c00360 0.31 +0.1 41,560 - PGA1_c00360 0.32 +1.7 41,592 + PGA1_c00360 0.34 +0.5 41,593 + PGA1_c00360 0.34 -0.1 41,593 + PGA1_c00360 0.34 +1.1 41,601 - PGA1_c00360 0.35 +0.2 41,622 + PGA1_c00360 0.36 -0.2 41,627 + PGA1_c00360 0.37 -2.1 41,668 + PGA1_c00360 0.40 +3.3 41,676 - PGA1_c00360 0.40 +1.1 41,709 + PGA1_c00360 0.43 -1.2 41,717 - PGA1_c00360 0.43 +0.7 41,747 + PGA1_c00360 0.46 +0.5 41,777 + PGA1_c00360 0.48 -0.5 41,785 - PGA1_c00360 0.48 -3.3 41,794 + PGA1_c00360 0.49 -2.0 41,794 + PGA1_c00360 0.49 +2.6 41,813 - PGA1_c00360 0.51 -0.7 41,854 + PGA1_c00360 0.54 -2.2 41,883 - PGA1_c00360 0.56 +1.0 41,883 - PGA1_c00360 0.56 +0.8 41,883 - PGA1_c00360 0.56 -1.1 41,990 - PGA1_c00360 0.64 -2.0 41,992 + PGA1_c00360 0.64 +1.5 41,992 + PGA1_c00360 0.64 +0.5 41,992 + PGA1_c00360 0.64 -0.2 42,085 - PGA1_c00360 0.71 -1.0 42,143 - PGA1_c00360 0.75 +0.7 42,236 - PGA1_c00360 0.82 -1.5 42,248 + PGA1_c00360 0.83 +1.1 42,248 + PGA1_c00360 0.83 -1.4 42,249 + PGA1_c00360 0.83 +0.5 42,249 + PGA1_c00360 0.83 +1.1 42,249 + PGA1_c00360 0.83 -0.0 42,249 + PGA1_c00360 0.83 +1.0 42,249 + PGA1_c00360 0.83 +1.3 42,249 + PGA1_c00360 0.83 +1.7 42,256 - PGA1_c00360 0.83 +1.9 42,257 - PGA1_c00360 0.83 +0.7 42,257 - PGA1_c00360 0.83 +1.8 42,257 - PGA1_c00360 0.83 -1.8 42,257 - PGA1_c00360 0.83 -1.0 42,257 - PGA1_c00360 0.83 -1.9 42,257 - PGA1_c00360 0.83 +0.3 42,257 - PGA1_c00360 0.83 +0.8 42,257 - PGA1_c00360 0.83 +0.9 42,257 - PGA1_c00360 0.83 +1.7 42,257 - PGA1_c00360 0.83 +1.1 42,257 - PGA1_c00360 0.83 -1.1 42,257 - PGA1_c00360 0.83 +1.3 42,278 - PGA1_c00360 0.85 -1.7 42,281 + PGA1_c00360 0.85 -0.9 42,290 - PGA1_c00360 0.86 -1.2 42,325 + PGA1_c00360 0.88 +0.3 42,327 - PGA1_c00360 0.88 -1.8 42,331 + PGA1_c00360 0.89 -1.5 42,333 - PGA1_c00360 0.89 -0.6 42,336 + PGA1_c00360 0.89 -1.8 42,339 - PGA1_c00360 0.89 +0.9 42,341 + PGA1_c00360 0.89 +0.3 42,344 - PGA1_c00360 0.90 -2.3 42,347 - PGA1_c00360 0.90 +2.3 42,347 - PGA1_c00360 0.90 -1.4 42,349 - +0.8 42,375 + +0.6 42,383 - -1.1 42,388 - +1.1 42,402 - -1.0 42,404 + +0.3 42,410 - +0.7 42,420 - -0.9 42,421 - +1.5 42,422 - -2.0 42,422 - -0.3 42,430 - -2.2 42,501 + +2.9 42,501 + +0.3 42,511 + -1.9 42,511 + +0.7 42,511 + +1.3 42,519 - -2.5 42,519 - +0.4 42,519 - +1.2 42,519 - -0.1 42,542 + +0.1 42,542 + -1.5 42,550 - -2.7 42,550 - -0.8 42,550 - -0.3 42,550 - -0.0 42,550 - +3.6 42,550 - -1.0 42,550 - +1.7 42,550 - -0.5 42,558 + -0.8 42,591 + -0.5 42,622 + PGA1_c00370 0.12 +1.0 42,630 - PGA1_c00370 0.14 -1.0 42,630 - PGA1_c00370 0.14 +2.4 42,630 - PGA1_c00370 0.14 +2.2 42,677 + PGA1_c00370 0.20 +0.9 42,720 + PGA1_c00370 0.26 -2.4 42,721 - PGA1_c00370 0.27 +1.3 42,749 + PGA1_c00370 0.31 +0.6 42,749 + PGA1_c00370 0.31 +0.0 42,757 - PGA1_c00370 0.32 +1.1 42,827 + PGA1_c00370 0.42 +1.8 42,860 - PGA1_c00370 0.47 +1.4 42,860 - PGA1_c00370 0.47 +0.9 42,865 + PGA1_c00370 0.47 -2.6 42,885 + PGA1_c00370 0.50 -2.1 42,893 - PGA1_c00370 0.51 +1.1 42,899 - PGA1_c00370 0.52 -1.7 42,901 + PGA1_c00370 0.52 -0.8 42,933 + PGA1_c00370 0.57 +1.0 42,939 - PGA1_c00370 0.58 +1.9 42,939 - PGA1_c00370 0.58 +0.4 42,964 - PGA1_c00370 0.61 +1.2 43,033 + PGA1_c00370 0.71 -0.7 43,033 + PGA1_c00370 0.71 -1.6 43,041 - PGA1_c00370 0.73 -0.6 43,098 - PGA1_c00370 0.81 +1.1 43,099 - PGA1_c00370 0.81 +0.3 43,213 - -1.7 43,249 + -1.7 43,267 - -2.0 43,306 + -0.5 43,316 + -2.2 43,316 + +0.3 43,316 + -2.7 43,357 + PGA1_c00380 0.12 +0.0 43,370 - PGA1_c00380 0.14 +0.5 43,401 + PGA1_c00380 0.18 +0.9 43,401 + PGA1_c00380 0.18 -1.9 43,405 + PGA1_c00380 0.19 -0.3 43,415 + PGA1_c00380 0.20 +0.2 43,418 + PGA1_c00380 0.21 -0.4 43,439 - PGA1_c00380 0.24 -2.8 43,452 + PGA1_c00380 0.26 +1.7 43,458 + PGA1_c00380 0.26 +1.6 43,469 + PGA1_c00380 0.28 +0.1 43,469 + PGA1_c00380 0.28 -0.9 43,469 + PGA1_c00380 0.28 +0.6 43,477 - PGA1_c00380 0.29 +2.2 43,477 - PGA1_c00380 0.29 +0.6 43,507 + PGA1_c00380 0.34 -0.7 43,507 + PGA1_c00380 0.34 +0.8 43,513 - PGA1_c00380 0.34 -2.9 43,528 - PGA1_c00380 0.37 +3.5 43,585 - PGA1_c00380 0.45 +0.7 43,585 - PGA1_c00380 0.45 +1.6 43,585 - PGA1_c00380 0.45 +2.9 43,600 - PGA1_c00380 0.47 -2.4 43,658 + PGA1_c00380 0.56 +1.3 43,666 - PGA1_c00380 0.57 +1.1 43,695 + PGA1_c00380 0.61 +1.3 43,695 + PGA1_c00380 0.61 -0.3 43,695 + PGA1_c00380 0.61 -2.2 43,695 + PGA1_c00380 0.61 -0.8 43,697 + PGA1_c00380 0.61 -0.7 43,734 + PGA1_c00380 0.67 +0.1 43,744 + PGA1_c00380 0.68 -1.1 43,752 - PGA1_c00380 0.69 +0.4 43,754 + PGA1_c00380 0.70 -1.9 43,770 + PGA1_c00380 0.72 +1.8 43,786 + PGA1_c00380 0.74 -1.0 43,803 + PGA1_c00380 0.77 -2.4 43,804 + PGA1_c00380 0.77 -1.8 43,804 + PGA1_c00380 0.77 +0.4 43,804 + PGA1_c00380 0.77 -1.5 43,827 + PGA1_c00380 0.80 +0.7 43,835 - PGA1_c00380 0.81 +0.2 43,837 + PGA1_c00380 0.82 -1.7 43,840 - PGA1_c00380 0.82 +0.2 43,842 + PGA1_c00380 0.82 +1.4 43,847 + PGA1_c00380 0.83 +0.5 43,894 + +0.7 43,902 - -1.9 43,904 + -1.2 43,919 - -2.0 43,986 + -0.3 43,999 + -2.0 43,999 + -1.3 44,002 - -2.0 44,007 - +1.9 44,013 + -0.2 44,019 - -1.9 44,044 - -2.5 44,066 + +0.6 44,073 + PGA1_c00390 0.11 -1.5 44,127 - PGA1_c00390 0.21 +1.1 44,150 - PGA1_c00390 0.25 -0.7 44,165 - PGA1_c00390 0.28 -1.9 44,171 - PGA1_c00390 0.29 +1.8 44,173 - PGA1_c00390 0.29 +1.2 44,229 + PGA1_c00390 0.40 +2.2 44,229 + PGA1_c00390 0.40 -1.1
Or see this region's nucleotide sequence