Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00530 and PGA1_262p00540 are separated by 74 nucleotides PGA1_262p00540 and PGA1_262p00550 are separated by 169 nucleotides
PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153
_262p00530
PGA1_262p00540: PGA1_262p00540 - succinate-semialdehyde dehdyrogenase GabD, at 62,228 to 63,607
_262p00540
PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033
_262p00550
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.249 kb on + strand at 61.272 kb on - strand at 61.389 kb on + strand, within PGA1_262p00530 at 61.499 kb on + strand, within PGA1_262p00530 at 61.595 kb on + strand, within PGA1_262p00530 at 61.808 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 62.111 kb on + strand at 62.129 kb on - strand at 62.316 kb on + strand at 62.632 kb on + strand, within PGA1_262p00540 at 62.632 kb on + strand, within PGA1_262p00540 at 62.642 kb on + strand, within PGA1_262p00540 at 62.852 kb on + strand, within PGA1_262p00540 at 62.860 kb on - strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 63.015 kb on - strand, within PGA1_262p00540 at 63.054 kb on + strand, within PGA1_262p00540 at 63.124 kb on + strand, within PGA1_262p00540 at 63.172 kb on + strand, within PGA1_262p00540 at 63.182 kb on + strand, within PGA1_262p00540 at 63.190 kb on - strand, within PGA1_262p00540 at 63.206 kb on + strand, within PGA1_262p00540 at 63.284 kb on - strand, within PGA1_262p00540 at 63.409 kb on + strand, within PGA1_262p00540 at 63.425 kb on + strand, within PGA1_262p00540 at 63.517 kb on - strand at 63.547 kb on + strand at 63.602 kb on + strand at 63.629 kb on + strand at 63.655 kb on + strand at 63.819 kb on - strand at 63.916 kb on + strand, within PGA1_262p00550 at 64.240 kb on - strand, within PGA1_262p00550 at 64.342 kb on - strand, within PGA1_262p00550 at 64.376 kb on + strand, within PGA1_262p00550 at 64.475 kb on + strand, within PGA1_262p00550 at 64.592 kb on - strand, within PGA1_262p00550
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 61,249 + +3.3 61,272 - -1.7 61,389 + PGA1_262p00530 0.22 -1.0 61,499 + PGA1_262p00530 0.33 +1.0 61,595 + PGA1_262p00530 0.43 +0.2 61,808 - PGA1_262p00530 0.65 +1.4 61,867 - PGA1_262p00530 0.71 +0.5 61,867 - PGA1_262p00530 0.71 -1.5 62,111 + -0.0 62,129 - -2.9 62,316 + -0.8 62,632 + PGA1_262p00540 0.29 -0.8 62,632 + PGA1_262p00540 0.29 +1.3 62,642 + PGA1_262p00540 0.30 -1.7 62,852 + PGA1_262p00540 0.45 +3.4 62,860 - PGA1_262p00540 0.46 -3.1 62,989 + PGA1_262p00540 0.55 -0.6 62,989 + PGA1_262p00540 0.55 -1.7 62,989 + PGA1_262p00540 0.55 +1.5 62,989 + PGA1_262p00540 0.55 -0.6 62,989 + PGA1_262p00540 0.55 +1.7 62,997 - PGA1_262p00540 0.56 -1.0 62,997 - PGA1_262p00540 0.56 +1.1 62,997 - PGA1_262p00540 0.56 -1.8 63,015 - PGA1_262p00540 0.57 -0.4 63,054 + PGA1_262p00540 0.60 -3.0 63,124 + PGA1_262p00540 0.65 +0.7 63,172 + PGA1_262p00540 0.68 -3.4 63,182 + PGA1_262p00540 0.69 +2.0 63,190 - PGA1_262p00540 0.70 -1.6 63,206 + PGA1_262p00540 0.71 -2.3 63,284 - PGA1_262p00540 0.77 -0.9 63,409 + PGA1_262p00540 0.86 -2.2 63,425 + PGA1_262p00540 0.87 +0.4 63,517 - +2.4 63,547 + -1.2 63,602 + +1.7 63,629 + -2.2 63,655 + -1.2 63,819 - +0.1 63,916 + PGA1_262p00550 0.11 -2.4 64,240 - PGA1_262p00550 0.37 -2.1 64,342 - PGA1_262p00550 0.45 +1.3 64,376 + PGA1_262p00550 0.48 +0.2 64,475 + PGA1_262p00550 0.56 -2.1 64,592 - PGA1_262p00550 0.65 +2.1
Or see this region's nucleotide sequence