Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35540

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,723,839	+		PGA1_c35520	0.55	+1.4
3,723,915	+		PGA1_c35520	0.60	+2.0
3,723,915	+		PGA1_c35520	0.60	+0.8
3,723,923	-		PGA1_c35520	0.61	-1.4
3,724,002	-		PGA1_c35520	0.66	+1.0
3,724,095	-		PGA1_c35520	0.72	+0.2
3,724,290	-		PGA1_c35520	0.85	+1.5
3,724,371	+				+0.8
3,724,376	+				-1.3
3,724,466	+				-1.2
3,724,474	-				+2.0
3,724,543	+				-2.1
3,724,545	-				-1.0
3,724,573	+				-1.0
3,724,578	+				+1.2
3,724,578	+				+1.8
3,724,581	-				-2.7
3,724,581	-				-2.3
3,724,588	+				-0.4
3,724,591	-				+2.2
3,724,644	-		PGA1_c35530	0.68	-0.0
3,724,709	-				-2.1
3,724,724	+				+1.6
3,724,802	+				-0.7
3,724,815	-				-0.7
3,724,834	-				-2.0
3,724,852	-				-0.9
3,724,925	+				+3.6
3,725,019	-		PGA1_c35540	0.13	+1.2
3,725,062	+		PGA1_c35540	0.15	-0.8
3,725,062	+		PGA1_c35540	0.15	-0.2
3,725,062	+		PGA1_c35540	0.15	+2.0
3,725,062	+		PGA1_c35540	0.15	-2.4
3,725,068	+		PGA1_c35540	0.16	-1.3
3,725,068	+		PGA1_c35540	0.16	-2.1
3,725,128	-		PGA1_c35540	0.19	+0.4
3,725,137	+		PGA1_c35540	0.20	-0.0
3,725,137	+		PGA1_c35540	0.20	-1.0
3,725,137	+		PGA1_c35540	0.20	-1.1
3,725,144	+		PGA1_c35540	0.20	+1.3
3,725,152	-		PGA1_c35540	0.21	+2.0
3,725,364	+		PGA1_c35540	0.34	-0.9
3,725,372	-		PGA1_c35540	0.35	-1.0
3,725,401	+		PGA1_c35540	0.36	+1.8
3,725,417	-		PGA1_c35540	0.37	-0.5
3,725,417	-		PGA1_c35540	0.37	-0.8
3,725,417	-		PGA1_c35540	0.37	+0.5
3,725,464	+		PGA1_c35540	0.40	-2.8
3,725,481	+		PGA1_c35540	0.41	-0.2
3,725,489	-		PGA1_c35540	0.42	+0.9
3,725,528	+		PGA1_c35540	0.44	+1.0
3,725,531	-		PGA1_c35540	0.44	-1.8
3,725,548	+		PGA1_c35540	0.45	-0.2
3,725,548	+		PGA1_c35540	0.45	+1.7
3,725,556	-		PGA1_c35540	0.46	-0.2
3,725,619	+		PGA1_c35540	0.50	-2.0
3,725,679	+		PGA1_c35540	0.54	-1.4
3,725,679	+		PGA1_c35540	0.54	-2.7
3,725,679	+		PGA1_c35540	0.54	+1.7
3,725,679	+		PGA1_c35540	0.54	-1.5
3,725,687	-		PGA1_c35540	0.54	-1.0
3,725,733	-		PGA1_c35540	0.57	-1.5
3,725,768	-		PGA1_c35540	0.59	+1.8
3,725,862	-		PGA1_c35540	0.65	+0.5
3,725,896	-		PGA1_c35540	0.67	+2.0
3,725,899	-		PGA1_c35540	0.67	-1.8
3,725,964	-		PGA1_c35540	0.71	-2.4
3,726,007	+		PGA1_c35540	0.74	+0.8
3,726,007	+		PGA1_c35540	0.74	-1.6
3,726,010	-		PGA1_c35540	0.74	-1.6
3,726,017	+		PGA1_c35540	0.74	-0.4
3,726,024	+		PGA1_c35540	0.75	-1.4
3,726,054	+		PGA1_c35540	0.77	-1.0
3,726,087	+		PGA1_c35540	0.79	-1.3
3,726,087	+		PGA1_c35540	0.79	+1.6
3,726,087	+		PGA1_c35540	0.79	+1.7
3,726,087	+		PGA1_c35540	0.79	-0.2
3,726,087	+		PGA1_c35540	0.79	-1.0
3,726,087	+		PGA1_c35540	0.79	-2.7
3,726,087	+		PGA1_c35540	0.79	-2.3
3,726,087	+		PGA1_c35540	0.79	+1.4
3,726,087	+		PGA1_c35540	0.79	-1.7
3,726,087	+		PGA1_c35540	0.79	-2.6
3,726,087	+		PGA1_c35540	0.79	+1.4
3,726,087	+		PGA1_c35540	0.79	-1.0
3,726,087	+		PGA1_c35540	0.79	-1.9
3,726,087	+		PGA1_c35540	0.79	+1.0
3,726,087	+		PGA1_c35540	0.79	-2.3
3,726,087	+		PGA1_c35540	0.79	+0.4
3,726,087	+		PGA1_c35540	0.79	-0.4
3,726,095	-		PGA1_c35540	0.79	-1.4
3,726,095	-		PGA1_c35540	0.79	-0.8
3,726,095	-		PGA1_c35540	0.79	-0.4
3,726,095	-		PGA1_c35540	0.79	-0.9
3,726,095	-		PGA1_c35540	0.79	+1.8
3,726,095	-		PGA1_c35540	0.79	-1.7
3,726,095	-		PGA1_c35540	0.79	-0.8
3,726,095	-		PGA1_c35540	0.79	+1.0
3,726,095	-		PGA1_c35540	0.79	-0.2
3,726,095	-		PGA1_c35540	0.79	-2.6
3,726,095	-		PGA1_c35540	0.79	-1.6
3,726,095	-		PGA1_c35540	0.79	-0.5
3,726,095	-		PGA1_c35540	0.79	-2.0
3,726,187	+		PGA1_c35540	0.85	-2.1
3,726,195	-		PGA1_c35540	0.85	+1.4
3,726,196	-		PGA1_c35540	0.86	-0.1
3,726,250	-		PGA1_c35540	0.89	-1.3
3,726,250	-		PGA1_c35540	0.89	+0.6
3,726,250	-		PGA1_c35540	0.89	+0.9
3,726,307	-				-1.9
3,726,308	+				-0.2
3,726,308	+				-3.0
3,726,316	-				+0.6
3,726,339	-				-0.0
3,726,479	+				+1.1
3,726,481	+				-1.3
3,726,516	-				+0.4
3,726,525	+				+0.3
3,726,525	+				-0.2
3,726,533	-				-1.0
3,726,546	-				+0.0
3,726,561	+				-1.7
3,726,569	+				-1.8
3,726,582	-				-3.0
3,726,634	-		PGA1_c35550	0.11	+1.9
3,726,634	-		PGA1_c35550	0.11	+2.0
3,726,636	-		PGA1_c35550	0.11	+1.0
3,726,636	-		PGA1_c35550	0.11	+1.5
3,726,750	+		PGA1_c35550	0.18	+1.4
3,726,758	-		PGA1_c35550	0.19	-1.3
3,726,845	+		PGA1_c35550	0.24	-0.9
3,726,845	+		PGA1_c35550	0.24	-0.6
3,726,847	+		PGA1_c35550	0.24	+0.8
3,726,847	+		PGA1_c35550	0.24	-1.1
3,726,847	+		PGA1_c35550	0.24	-1.3
3,726,847	+		PGA1_c35550	0.24	+1.2
3,726,847	+		PGA1_c35550	0.24	-1.3
3,726,847	+		PGA1_c35550	0.24	-1.8
3,726,847	+		PGA1_c35550	0.24	+0.4
3,726,847	+		PGA1_c35550	0.24	+0.2
3,726,853	-		PGA1_c35550	0.25	+1.3
3,726,855	-		PGA1_c35550	0.25	+2.6
3,726,855	-		PGA1_c35550	0.25	-2.1
3,726,855	-		PGA1_c35550	0.25	+1.2
3,726,855	-		PGA1_c35550	0.25	-0.7
3,726,855	-		PGA1_c35550	0.25	+0.1
3,726,855	-		PGA1_c35550	0.25	-2.8
3,726,855	-		PGA1_c35550	0.25	-1.9
3,726,855	-		PGA1_c35550	0.25	+3.3
3,726,857	+		PGA1_c35550	0.25	+0.3
3,726,862	+		PGA1_c35550	0.25	+1.5
3,726,907	+		PGA1_c35550	0.28	+0.9
3,726,907	+		PGA1_c35550	0.28	-0.0
3,726,907	+		PGA1_c35550	0.28	-2.1
3,726,907	+		PGA1_c35550	0.28	-1.9
3,726,922	+		PGA1_c35550	0.29	-0.3
3,726,956	+		PGA1_c35550	0.31	-0.4
3,726,956	+		PGA1_c35550	0.31	-1.9
3,726,956	+		PGA1_c35550	0.31	-0.4
3,726,956	+		PGA1_c35550	0.31	+1.8
3,726,957	-		PGA1_c35550	0.31	-1.1
3,726,964	-		PGA1_c35550	0.31	+1.3
3,726,964	-		PGA1_c35550	0.31	+0.0
3,726,964	-		PGA1_c35550	0.31	+1.5
3,726,998	-		PGA1_c35550	0.34	-2.4
3,727,000	+		PGA1_c35550	0.34	-1.8
3,727,008	+		PGA1_c35550	0.34	-1.6
3,727,027	+		PGA1_c35550	0.35	+0.1
3,727,027	+		PGA1_c35550	0.35	-0.2
3,727,027	+		PGA1_c35550	0.35	+0.4
3,727,027	+		PGA1_c35550	0.35	+0.5
3,727,027	+		PGA1_c35550	0.35	+1.1
3,727,035	-		PGA1_c35550	0.36	-1.7
3,727,035	-		PGA1_c35550	0.36	-1.2
3,727,035	-		PGA1_c35550	0.36	+1.2
3,727,035	-		PGA1_c35550	0.36	-0.9
3,727,035	-		PGA1_c35550	0.36	-1.0
3,727,035	-		PGA1_c35550	0.36	-1.0
3,727,035	-		PGA1_c35550	0.36	-3.0
3,727,043	-		PGA1_c35550	0.36	+2.6
3,727,049	+		PGA1_c35550	0.37	-1.7
3,727,049	+		PGA1_c35550	0.37	-1.3
3,727,049	+		PGA1_c35550	0.37	-0.2
3,727,057	-		PGA1_c35550	0.37	+3.1
3,727,095	+		PGA1_c35550	0.40	-1.8
3,727,095	+		PGA1_c35550	0.40	-0.4
3,727,116	+		PGA1_c35550	0.41	-1.1
3,727,141	-		PGA1_c35550	0.42	-1.2
3,727,153	+		PGA1_c35550	0.43	+0.8
3,727,161	-		PGA1_c35550	0.44	-2.6
3,727,164	+		PGA1_c35550	0.44	-1.5
3,727,174	-		PGA1_c35550	0.44	-1.9
3,727,307	+		PGA1_c35550	0.53	+2.0
3,727,331	+		PGA1_c35550	0.54	-1.4
3,727,331	+		PGA1_c35550	0.54	-0.1
3,727,346	-		PGA1_c35550	0.55	+1.6
3,727,369	+		PGA1_c35550	0.56	+0.2
3,727,381	+		PGA1_c35550	0.57	-0.2
3,727,386	+		PGA1_c35550	0.57	-1.8
3,727,428	-		PGA1_c35550	0.60	+1.0