Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03480 and PGA1_c03490 are separated by 61 nucleotides PGA1_c03490 and PGA1_c03500 are separated by 218 nucleotides PGA1_c03500 and PGA1_c03510 overlap by 4 nucleotides
PGA1_c03480: PGA1_c03480 - hypothetical protein, at 334,018 to 336,831
_c03480
PGA1_c03490: PGA1_c03490 - hypothetical protein, at 336,893 to 337,774
_c03490
PGA1_c03500: PGA1_c03500 - putative cell division ATP-binding protein FtsE, at 337,993 to 338,670
_c03500
PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566
_c03510
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 335.899 kb on + strand, within PGA1_c03480 at 336.022 kb on - strand, within PGA1_c03480 at 336.029 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.059 kb on - strand, within PGA1_c03480 at 336.061 kb on + strand, within PGA1_c03480 at 336.090 kb on + strand, within PGA1_c03480 at 336.098 kb on - strand, within PGA1_c03480 at 336.098 kb on - strand, within PGA1_c03480 at 336.294 kb on - strand, within PGA1_c03480 at 336.361 kb on + strand, within PGA1_c03480 at 336.361 kb on + strand, within PGA1_c03480 at 336.362 kb on + strand, within PGA1_c03480 at 336.376 kb on - strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.395 kb on - strand, within PGA1_c03480 at 336.402 kb on - strand, within PGA1_c03480 at 336.444 kb on + strand, within PGA1_c03480 at 336.486 kb on + strand, within PGA1_c03480 at 336.550 kb on + strand at 336.550 kb on + strand at 336.608 kb on - strand at 336.618 kb on + strand at 336.715 kb on + strand at 336.715 kb on + strand at 336.715 kb on + strand at 336.715 kb on + strand at 336.779 kb on + strand at 336.811 kb on - strand at 336.832 kb on - strand at 336.869 kb on + strand at 336.904 kb on + strand at 336.912 kb on - strand at 336.912 kb on - strand at 336.912 kb on - strand at 336.978 kb on + strand at 336.984 kb on + strand, within PGA1_c03490 at 336.992 kb on - strand, within PGA1_c03490 at 337.026 kb on + strand, within PGA1_c03490 at 337.194 kb on - strand, within PGA1_c03490 at 337.333 kb on - strand, within PGA1_c03490 at 337.382 kb on + strand, within PGA1_c03490 at 337.719 kb on - strand at 337.776 kb on + strand at 337.783 kb on - strand at 337.876 kb on + strand at 337.893 kb on + strand at 337.893 kb on + strand at 337.901 kb on - strand at 337.901 kb on - strand at 337.914 kb on + strand at 337.922 kb on - strand at 337.928 kb on - strand at 337.937 kb on + strand at 338.043 kb on - strand at 338.097 kb on + strand, within PGA1_c03500 at 338.268 kb on + strand, within PGA1_c03500 at 338.295 kb on + strand, within PGA1_c03500 at 338.309 kb on - strand, within PGA1_c03500 at 338.570 kb on + strand, within PGA1_c03500 at 338.589 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.613 kb on + strand at 338.613 kb on + strand at 338.652 kb on + strand at 338.652 kb on + strand at 338.676 kb on + strand at 338.711 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 335,899 + PGA1_c03480 0.67 -0.9 336,022 - PGA1_c03480 0.71 -0.8 336,029 + PGA1_c03480 0.71 +2.8 336,046 + PGA1_c03480 0.72 -1.6 336,046 + PGA1_c03480 0.72 -0.1 336,046 + PGA1_c03480 0.72 -0.3 336,046 + PGA1_c03480 0.72 -0.6 336,046 + PGA1_c03480 0.72 -0.1 336,059 - PGA1_c03480 0.73 +2.5 336,061 + PGA1_c03480 0.73 +0.5 336,090 + PGA1_c03480 0.74 +3.3 336,098 - PGA1_c03480 0.74 +0.7 336,098 - PGA1_c03480 0.74 -0.3 336,294 - PGA1_c03480 0.81 -1.9 336,361 + PGA1_c03480 0.83 +2.9 336,361 + PGA1_c03480 0.83 -1.2 336,362 + PGA1_c03480 0.83 -0.3 336,376 - PGA1_c03480 0.84 +0.2 336,387 + PGA1_c03480 0.84 +0.7 336,387 + PGA1_c03480 0.84 +1.4 336,387 + PGA1_c03480 0.84 -1.6 336,387 + PGA1_c03480 0.84 +0.5 336,387 + PGA1_c03480 0.84 -0.9 336,387 + PGA1_c03480 0.84 +2.9 336,387 + PGA1_c03480 0.84 +0.7 336,395 - PGA1_c03480 0.84 -1.6 336,402 - PGA1_c03480 0.85 -2.2 336,444 + PGA1_c03480 0.86 +2.8 336,486 + PGA1_c03480 0.88 +1.2 336,550 + -1.1 336,550 + +0.4 336,608 - +1.3 336,618 + -1.6 336,715 + +1.0 336,715 + +0.8 336,715 + +0.9 336,715 + -1.4 336,779 + +1.2 336,811 - +0.8 336,832 - -1.4 336,869 + +2.5 336,904 + +2.2 336,912 - -0.3 336,912 - -2.3 336,912 - -0.1 336,978 + -0.1 336,984 + PGA1_c03490 0.10 +0.5 336,992 - PGA1_c03490 0.11 -2.8 337,026 + PGA1_c03490 0.15 -0.5 337,194 - PGA1_c03490 0.34 -0.5 337,333 - PGA1_c03490 0.50 +1.5 337,382 + PGA1_c03490 0.55 -0.8 337,719 - +0.9 337,776 + +1.2 337,783 - +4.5 337,876 + +0.5 337,893 + -0.7 337,893 + +1.5 337,901 - +0.5 337,901 - +1.5 337,914 + -0.9 337,922 - +1.9 337,928 - +1.4 337,937 + -0.3 338,043 - +0.2 338,097 + PGA1_c03500 0.15 +2.0 338,268 + PGA1_c03500 0.41 -1.3 338,295 + PGA1_c03500 0.45 -0.8 338,309 - PGA1_c03500 0.47 +2.7 338,570 + PGA1_c03500 0.85 +0.7 338,589 - PGA1_c03500 0.88 +0.2 338,594 - PGA1_c03500 0.89 +1.9 338,594 - PGA1_c03500 0.89 +3.3 338,613 + +1.3 338,613 + -1.2 338,652 + +0.5 338,652 + -0.3 338,676 + -1.7 338,711 + +1.2
Or see this region's nucleotide sequence