Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30810

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,217,111	+		PGA1_c30800	0.15	-0.2
3,217,114	-		PGA1_c30800	0.15	+1.9
3,217,152	-		PGA1_c30800	0.18	-1.5
3,217,159	+		PGA1_c30800	0.19	-2.1
3,217,167	-		PGA1_c30800	0.20	-0.0
3,217,170	+		PGA1_c30800	0.20	+1.4
3,217,185	+		PGA1_c30800	0.21	+0.2
3,217,187	+		PGA1_c30800	0.21	+3.0
3,217,193	-		PGA1_c30800	0.22	+0.3
3,217,194	+		PGA1_c30800	0.22	-1.7
3,217,195	-		PGA1_c30800	0.22	-2.3
3,217,195	-		PGA1_c30800	0.22	-0.7
3,217,195	-		PGA1_c30800	0.22	-1.7
3,217,195	-		PGA1_c30800	0.22	+0.3
3,217,199	+		PGA1_c30800	0.22	+0.6
3,217,199	+		PGA1_c30800	0.22	-0.7
3,217,199	+		PGA1_c30800	0.22	+0.5
3,217,199	+		PGA1_c30800	0.22	-1.3
3,217,199	+		PGA1_c30800	0.22	-2.2
3,217,199	+		PGA1_c30800	0.22	-1.5
3,217,204	+		PGA1_c30800	0.23	-1.0
3,217,204	+		PGA1_c30800	0.23	+1.8
3,217,204	+		PGA1_c30800	0.23	+0.7
3,217,204	+		PGA1_c30800	0.23	+1.2
3,217,204	+		PGA1_c30800	0.23	+3.7
3,217,204	+		PGA1_c30800	0.23	-1.9
3,217,204	+		PGA1_c30800	0.23	+1.5
3,217,206	+		PGA1_c30800	0.23	+3.3
3,217,207	-		PGA1_c30800	0.23	-1.7
3,217,207	-		PGA1_c30800	0.23	-1.5
3,217,207	-		PGA1_c30800	0.23	+0.3
3,217,207	-		PGA1_c30800	0.23	+1.0
3,217,207	-		PGA1_c30800	0.23	+1.4
3,217,207	-		PGA1_c30800	0.23	-2.5
3,217,207	-		PGA1_c30800	0.23	-1.4
3,217,212	-		PGA1_c30800	0.23	+1.2
3,217,212	-		PGA1_c30800	0.23	+1.4
3,217,214	-		PGA1_c30800	0.24	-1.1
3,217,234	-		PGA1_c30800	0.25	+2.9
3,217,259	-		PGA1_c30800	0.27	+1.1
3,217,323	-		PGA1_c30800	0.33	-0.4
3,217,368	+		PGA1_c30800	0.37	+2.6
3,217,382	+		PGA1_c30800	0.38	+1.9
3,217,390	-		PGA1_c30800	0.39	+0.6
3,217,390	-		PGA1_c30800	0.39	-1.9
3,217,390	-		PGA1_c30800	0.39	+3.0
3,217,392	+		PGA1_c30800	0.39	-1.0
3,217,392	+		PGA1_c30800	0.39	+0.6
3,217,397	+		PGA1_c30800	0.39	+0.1
3,217,400	-		PGA1_c30800	0.40	+2.1
3,217,402	+		PGA1_c30800	0.40	+1.0
3,217,402	+		PGA1_c30800	0.40	-2.5
3,217,405	-		PGA1_c30800	0.40	-0.9
3,217,420	+		PGA1_c30800	0.41	+0.5
3,217,422	-		PGA1_c30800	0.42	-0.0
3,217,428	-		PGA1_c30800	0.42	+1.1
3,217,428	-		PGA1_c30800	0.42	+2.4
3,217,437	+		PGA1_c30800	0.43	-0.8
3,217,501	+		PGA1_c30800	0.48	+0.8
3,217,509	-		PGA1_c30800	0.49	-1.9
3,217,509	-		PGA1_c30800	0.49	+1.2
3,217,562	-		PGA1_c30800	0.54	+0.2
3,217,567	-		PGA1_c30800	0.54	+1.4
3,217,595	-		PGA1_c30800	0.56	-0.9
3,217,615	-		PGA1_c30800	0.58	-0.7
3,217,637	+		PGA1_c30800	0.60	+2.1
3,217,643	+		PGA1_c30800	0.61	+2.2
3,217,643	+		PGA1_c30800	0.61	+1.8
3,217,643	+		PGA1_c30800	0.61	-1.8
3,217,643	+		PGA1_c30800	0.61	-0.4
3,217,651	-		PGA1_c30800	0.61	+2.2
3,217,651	-		PGA1_c30800	0.61	+1.1
3,217,663	+		PGA1_c30800	0.62	+2.6
3,217,715	-		PGA1_c30800	0.67	+1.0
3,217,715	-		PGA1_c30800	0.67	-2.8
3,217,766	+		PGA1_c30800	0.71	-2.1
3,217,766	+		PGA1_c30800	0.71	+1.4
3,217,766	+		PGA1_c30800	0.71	+2.3
3,217,774	-		PGA1_c30800	0.72	+0.6
3,217,774	-		PGA1_c30800	0.72	+2.0
3,217,784	-		PGA1_c30800	0.73	-1.4
3,217,822	-		PGA1_c30800	0.76	+1.7
3,217,823	-		PGA1_c30800	0.76	-1.1
3,217,828	-		PGA1_c30800	0.76	+0.7
3,217,845	+		PGA1_c30800	0.78	+1.4
3,217,876	-		PGA1_c30800	0.81	-0.6
3,217,937	+		PGA1_c30800	0.86	-1.0
3,217,958	-		PGA1_c30800	0.88	-0.0
3,217,965	-		PGA1_c30800	0.88	-2.2
3,217,990	+				+0.7
3,217,998	-				-2.9
3,218,004	+				-0.6
3,218,028	-				+1.2
3,218,078	-				+1.2
3,218,084	+				+1.1
3,218,126	+				+2.0
3,218,129	-				-0.7
3,218,162	+				+2.6
3,218,162	+				-0.0
3,218,165	-				+2.6
3,218,170	-				+2.3
3,218,204	+		PGA1_c30810	0.10	-1.0
3,218,204	+		PGA1_c30810	0.10	-0.9
3,218,212	-		PGA1_c30810	0.11	+0.5
3,218,212	-		PGA1_c30810	0.11	-0.2
3,218,236	+		PGA1_c30810	0.14	+3.2
3,218,286	+		PGA1_c30810	0.19	-0.0
3,218,303	-		PGA1_c30810	0.20	+2.1
3,218,321	-		PGA1_c30810	0.22	+0.3
3,218,329	-		PGA1_c30810	0.23	-0.4
3,218,330	+		PGA1_c30810	0.23	-0.9
3,218,330	+		PGA1_c30810	0.23	-1.8
3,218,340	+		PGA1_c30810	0.24	-0.2
3,218,360	+		PGA1_c30810	0.26	-2.3
3,218,399	+		PGA1_c30810	0.30	+1.5
3,218,400	+		PGA1_c30810	0.30	+0.3
3,218,400	+		PGA1_c30810	0.30	-2.6
3,218,400	+		PGA1_c30810	0.30	-1.7
3,218,406	+		PGA1_c30810	0.31	-0.0
3,218,408	-		PGA1_c30810	0.31	-0.9
3,218,408	-		PGA1_c30810	0.31	+1.3
3,218,408	-		PGA1_c30810	0.31	-1.9
3,218,408	-		PGA1_c30810	0.31	-0.2
3,218,408	-		PGA1_c30810	0.31	-0.5
3,218,408	-		PGA1_c30810	0.31	-0.2
3,218,408	-		PGA1_c30810	0.31	+1.2
3,218,408	-		PGA1_c30810	0.31	-2.1
3,218,492	+		PGA1_c30810	0.40	+0.4
3,218,492	+		PGA1_c30810	0.40	-1.3
3,218,492	+		PGA1_c30810	0.40	+0.0
3,218,492	+		PGA1_c30810	0.40	-2.4
3,218,579	+		PGA1_c30810	0.49	-0.6
3,218,590	+		PGA1_c30810	0.50	-0.6
3,218,590	+		PGA1_c30810	0.50	+1.8
3,218,590	+		PGA1_c30810	0.50	-0.0
3,218,590	+		PGA1_c30810	0.50	-1.1
3,218,590	+		PGA1_c30810	0.50	-2.1
3,218,598	-		PGA1_c30810	0.51	+1.3
3,218,598	-		PGA1_c30810	0.51	+0.6
3,218,598	-		PGA1_c30810	0.51	+2.7
3,218,598	-		PGA1_c30810	0.51	-1.4
3,218,606	+		PGA1_c30810	0.51	-1.1
3,218,606	+		PGA1_c30810	0.51	-0.5
3,218,606	+		PGA1_c30810	0.51	+2.6
3,218,606	+		PGA1_c30810	0.51	+1.1
3,218,606	+		PGA1_c30810	0.51	+0.3
3,218,614	-		PGA1_c30810	0.52	+1.0
3,218,614	-		PGA1_c30810	0.52	-2.1
3,218,658	-		PGA1_c30810	0.57	+0.3
3,218,667	-		PGA1_c30810	0.58	-0.1
3,218,693	+		PGA1_c30810	0.60	+0.4
3,218,693	+		PGA1_c30810	0.60	-1.5
3,218,711	+		PGA1_c30810	0.62	+0.6
3,218,743	-		PGA1_c30810	0.65	-0.0
3,218,749	+		PGA1_c30810	0.66	+1.1
3,218,752	+		PGA1_c30810	0.66	+1.2
3,218,755	-		PGA1_c30810	0.67	+1.0
3,218,760	-		PGA1_c30810	0.67	-1.1
3,218,762	+		PGA1_c30810	0.67	-0.6
3,218,770	-		PGA1_c30810	0.68	-0.9
3,218,775	+		PGA1_c30810	0.69	+0.6
3,218,783	-		PGA1_c30810	0.69	+1.2
3,218,783	-		PGA1_c30810	0.69	-0.2
3,218,783	-		PGA1_c30810	0.69	+0.8
3,218,783	-		PGA1_c30810	0.69	-2.3
3,218,790	+		PGA1_c30810	0.70	+1.0
3,218,820	+		PGA1_c30810	0.73	-1.1
3,218,820	+		PGA1_c30810	0.73	-0.7
3,218,878	-		PGA1_c30810	0.79	+0.1
3,218,999	-				-1.0
3,218,999	-				-0.3
3,219,036	+				+1.5
3,219,040	+				-2.1
3,219,044	-				-2.0
3,219,046	+				-0.2
3,219,059	-				+1.2
3,219,100	-				+1.4
3,219,108	-				+0.0
3,219,108	-				+0.8
3,219,139	+				-1.7
3,219,148	+				+0.9
3,219,149	-				+0.3
3,219,149	-				+1.0
3,219,159	-				+1.1
3,219,240	-		PGA1_c30820	0.17	+1.6
3,219,242	+		PGA1_c30820	0.17	-1.7
3,219,242	+		PGA1_c30820	0.17	-1.8
3,219,242	+		PGA1_c30820	0.17	-2.3
3,219,242	+		PGA1_c30820	0.17	+2.0
3,219,242	+		PGA1_c30820	0.17	+0.6
3,219,242	+		PGA1_c30820	0.17	+2.3
3,219,242	+		PGA1_c30820	0.17	+0.4
3,219,242	+		PGA1_c30820	0.17	+1.4
3,219,242	+		PGA1_c30820	0.17	-1.0
3,219,242	+		PGA1_c30820	0.17	+2.3
3,219,242	+		PGA1_c30820	0.17	-1.7
3,219,250	-		PGA1_c30820	0.18	+0.0
3,219,250	-		PGA1_c30820	0.18	+0.6
3,219,250	-		PGA1_c30820	0.18	+2.6
3,219,250	-		PGA1_c30820	0.18	-1.7
3,219,250	-		PGA1_c30820	0.18	+1.4
3,219,250	-		PGA1_c30820	0.18	-0.6
3,219,250	-		PGA1_c30820	0.18	+1.5
3,219,250	-		PGA1_c30820	0.18	-1.7
3,219,255	-		PGA1_c30820	0.18	-1.3
3,219,271	+		PGA1_c30820	0.20	+0.3
3,219,291	+		PGA1_c30820	0.22	-0.3
3,219,291	+		PGA1_c30820	0.22	-1.4
3,219,291	-		PGA1_c30820	0.22	+1.5
3,219,294	+		PGA1_c30820	0.22	-0.7
3,219,313	+		PGA1_c30820	0.24	+0.9
3,219,342	+		PGA1_c30820	0.27	+4.0
3,219,342	+		PGA1_c30820	0.27	+0.6
3,219,342	+		PGA1_c30820	0.27	-0.9
3,219,342	+		PGA1_c30820	0.27	+1.0
3,219,350	-		PGA1_c30820	0.28	-1.4
3,219,350	-		PGA1_c30820	0.28	-0.1
3,219,350	-		PGA1_c30820	0.28	-0.4
3,219,350	-		PGA1_c30820	0.28	-2.0
3,219,391	+		PGA1_c30820	0.32	-1.1
3,219,391	+		PGA1_c30820	0.32	-0.3
3,219,391	-		PGA1_c30820	0.32	-0.6
3,219,409	+		PGA1_c30820	0.34	+2.9
3,219,409	+		PGA1_c30820	0.34	-0.9
3,219,423	+		PGA1_c30820	0.36	+0.4
3,219,439	-		PGA1_c30820	0.37	-0.2
3,219,598	-		PGA1_c30820	0.54	+1.6
3,219,598	-		PGA1_c30820	0.54	+0.3
3,219,605	+		PGA1_c30820	0.55	+1.0
3,219,613	-		PGA1_c30820	0.55	+1.3
3,219,613	-		PGA1_c30820	0.55	-1.9
3,219,613	-		PGA1_c30820	0.55	+0.9
3,219,613	-		PGA1_c30820	0.55	-1.4
3,219,615	+		PGA1_c30820	0.56	+0.4
3,219,623	-		PGA1_c30820	0.56	-1.9
3,219,623	-		PGA1_c30820	0.56	-0.9
3,219,660	-		PGA1_c30820	0.60	-0.2
3,219,695	-		PGA1_c30820	0.64	+0.3
3,219,742	-		PGA1_c30820	0.69	-1.1
3,219,747	-		PGA1_c30820	0.69	-2.7
3,219,774	-		PGA1_c30820	0.72	+2.9
3,219,789	-		PGA1_c30820	0.74	-0.4
3,219,880	+		PGA1_c30820	0.83	+2.4
3,219,887	+		PGA1_c30820	0.84	-1.4
3,219,887	+		PGA1_c30820	0.84	+1.0
3,219,887	+		PGA1_c30820	0.84	+2.3
3,219,891	-		PGA1_c30820	0.84	+0.6
3,219,895	-		PGA1_c30820	0.85	+1.6
3,219,929	+		PGA1_c30820	0.88	+2.1
3,219,990	-				-1.7
3,220,005	-				-1.4
3,220,016	+				+2.6
3,220,016	+				-1.6
3,220,024	-				-2.2
3,220,029	-				-0.7
3,220,029	-				-0.6
3,220,029	-				-1.2
3,220,029	-				+1.9
3,220,068	+				+1.6
3,220,068	+				-0.9
3,220,076	-				+0.3
3,220,076	-				-0.2
3,220,076	-				+1.6
3,220,076	-				-0.9
3,220,081	-				-0.7