Strain Fitness in Marinobacter adhaerens HP15 around HP15_2517

Experiment: m.b. pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2516 and HP15_2517 are separated by 108 nucleotidesHP15_2517 and HP15_2518 are separated by 11 nucleotides HP15_2516: HP15_2516 - GTPase - translation elongation factor, at 2,654,842 to 2,656,647 _2516 HP15_2517: HP15_2517 - PAS sensor diguanylate cyclase/phosphodiesterase, at 2,656,756 to 2,658,840 _2517 HP15_2518: HP15_2518 - phosphoserine phosphatase SerB, at 2,658,852 to 2,660,084 _2518 Position (kb) 2656 2657 2658 2659Strain fitness (log2 ratio) -1 0 1at 2655.848 kb on + strand, within HP15_2516at 2655.848 kb on + strand, within HP15_2516at 2655.850 kb on + strand, within HP15_2516at 2655.856 kb on - strand, within HP15_2516at 2655.856 kb on - strand, within HP15_2516at 2655.858 kb on - strand, within HP15_2516at 2655.858 kb on - strand, within HP15_2516at 2656.059 kb on + strand, within HP15_2516at 2656.132 kb on - strand, within HP15_2516at 2656.222 kb on + strand, within HP15_2516at 2656.237 kb on - strand, within HP15_2516at 2656.334 kb on + strand, within HP15_2516at 2656.359 kb on + strand, within HP15_2516at 2656.364 kb on + strand, within HP15_2516at 2656.492 kb on + strandat 2656.524 kb on - strandat 2656.664 kb on + strandat 2656.664 kb on + strandat 2656.716 kb on + strandat 2656.968 kb on - strand, within HP15_2517at 2657.038 kb on - strand, within HP15_2517at 2657.052 kb on + strand, within HP15_2517at 2657.104 kb on + strand, within HP15_2517at 2657.166 kb on - strand, within HP15_2517at 2657.243 kb on - strand, within HP15_2517at 2657.261 kb on - strand, within HP15_2517at 2657.571 kb on + strand, within HP15_2517at 2657.785 kb on - strand, within HP15_2517at 2657.886 kb on - strand, within HP15_2517at 2657.914 kb on + strand, within HP15_2517at 2657.961 kb on + strand, within HP15_2517at 2658.034 kb on - strand, within HP15_2517at 2658.044 kb on + strand, within HP15_2517at 2658.060 kb on - strand, within HP15_2517at 2658.243 kb on - strand, within HP15_2517at 2658.308 kb on + strand, within HP15_2517at 2658.387 kb on + strand, within HP15_2517at 2658.462 kb on + strand, within HP15_2517at 2658.576 kb on + strand, within HP15_2517at 2658.681 kb on + strandat 2658.764 kb on - strandat 2658.850 kb on + strandat 2658.850 kb on + strandat 2658.850 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH7
remove
2,655,848 + HP15_2516 0.56 +0.1
2,655,848 + HP15_2516 0.56 -0.8
2,655,850 + HP15_2516 0.56 +0.4
2,655,856 - HP15_2516 0.56 -0.5
2,655,856 - HP15_2516 0.56 +0.2
2,655,858 - HP15_2516 0.56 +0.2
2,655,858 - HP15_2516 0.56 -0.2
2,656,059 + HP15_2516 0.67 -0.3
2,656,132 - HP15_2516 0.71 +0.7
2,656,222 + HP15_2516 0.76 -1.1
2,656,237 - HP15_2516 0.77 -0.4
2,656,334 + HP15_2516 0.83 -0.2
2,656,359 + HP15_2516 0.84 +0.2
2,656,364 + HP15_2516 0.84 +0.1
2,656,492 + -0.3
2,656,524 - -0.2
2,656,664 + +0.4
2,656,664 + -0.3
2,656,716 + -1.2
2,656,968 - HP15_2517 0.10 +0.2
2,657,038 - HP15_2517 0.14 -0.9
2,657,052 + HP15_2517 0.14 -0.3
2,657,104 + HP15_2517 0.17 +0.7
2,657,166 - HP15_2517 0.20 -0.1
2,657,243 - HP15_2517 0.23 +1.1
2,657,261 - HP15_2517 0.24 +0.6
2,657,571 + HP15_2517 0.39 +0.8
2,657,785 - HP15_2517 0.49 -0.7
2,657,886 - HP15_2517 0.54 +0.3
2,657,914 + HP15_2517 0.56 -0.1
2,657,961 + HP15_2517 0.58 +0.1
2,658,034 - HP15_2517 0.61 -0.3
2,658,044 + HP15_2517 0.62 -0.0
2,658,060 - HP15_2517 0.63 -1.0
2,658,243 - HP15_2517 0.71 +0.1
2,658,308 + HP15_2517 0.74 -0.3
2,658,387 + HP15_2517 0.78 +1.1
2,658,462 + HP15_2517 0.82 +0.4
2,658,576 + HP15_2517 0.87 +0.1
2,658,681 + -0.3
2,658,764 - +0.4
2,658,850 + -0.7
2,658,850 + -0.1
2,658,850 + -0.0

Or see this region's nucleotide sequence