Experiment: m.b. pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2516 and HP15_2517 are separated by 108 nucleotides HP15_2517 and HP15_2518 are separated by 11 nucleotides
HP15_2516: HP15_2516 - GTPase - translation elongation factor, at 2,654,842 to 2,656,647
_2516
HP15_2517: HP15_2517 - PAS sensor diguanylate cyclase/phosphodiesterase, at 2,656,756 to 2,658,840
_2517
HP15_2518: HP15_2518 - phosphoserine phosphatase SerB, at 2,658,852 to 2,660,084
_2518
Position (kb)
2656
2657
2658
2659 Strain fitness (log2 ratio)
-1
0
1 at 2655.848 kb on + strand, within HP15_2516 at 2655.848 kb on + strand, within HP15_2516 at 2655.850 kb on + strand, within HP15_2516 at 2655.856 kb on - strand, within HP15_2516 at 2655.856 kb on - strand, within HP15_2516 at 2655.858 kb on - strand, within HP15_2516 at 2655.858 kb on - strand, within HP15_2516 at 2656.059 kb on + strand, within HP15_2516 at 2656.132 kb on - strand, within HP15_2516 at 2656.222 kb on + strand, within HP15_2516 at 2656.237 kb on - strand, within HP15_2516 at 2656.334 kb on + strand, within HP15_2516 at 2656.359 kb on + strand, within HP15_2516 at 2656.364 kb on + strand, within HP15_2516 at 2656.492 kb on + strand at 2656.524 kb on - strand at 2656.664 kb on + strand at 2656.664 kb on + strand at 2656.716 kb on + strand at 2656.968 kb on - strand, within HP15_2517 at 2657.038 kb on - strand, within HP15_2517 at 2657.052 kb on + strand, within HP15_2517 at 2657.104 kb on + strand, within HP15_2517 at 2657.166 kb on - strand, within HP15_2517 at 2657.243 kb on - strand, within HP15_2517 at 2657.261 kb on - strand, within HP15_2517 at 2657.571 kb on + strand, within HP15_2517 at 2657.785 kb on - strand, within HP15_2517 at 2657.886 kb on - strand, within HP15_2517 at 2657.914 kb on + strand, within HP15_2517 at 2657.961 kb on + strand, within HP15_2517 at 2658.034 kb on - strand, within HP15_2517 at 2658.044 kb on + strand, within HP15_2517 at 2658.060 kb on - strand, within HP15_2517 at 2658.243 kb on - strand, within HP15_2517 at 2658.308 kb on + strand, within HP15_2517 at 2658.387 kb on + strand, within HP15_2517 at 2658.462 kb on + strand, within HP15_2517 at 2658.576 kb on + strand, within HP15_2517 at 2658.681 kb on + strand at 2658.764 kb on - strand at 2658.850 kb on + strand at 2658.850 kb on + strand at 2658.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH7 remove 2,655,848 + HP15_2516 0.56 +0.1 2,655,848 + HP15_2516 0.56 -0.8 2,655,850 + HP15_2516 0.56 +0.4 2,655,856 - HP15_2516 0.56 -0.5 2,655,856 - HP15_2516 0.56 +0.2 2,655,858 - HP15_2516 0.56 +0.2 2,655,858 - HP15_2516 0.56 -0.2 2,656,059 + HP15_2516 0.67 -0.3 2,656,132 - HP15_2516 0.71 +0.7 2,656,222 + HP15_2516 0.76 -1.1 2,656,237 - HP15_2516 0.77 -0.4 2,656,334 + HP15_2516 0.83 -0.2 2,656,359 + HP15_2516 0.84 +0.2 2,656,364 + HP15_2516 0.84 +0.1 2,656,492 + -0.3 2,656,524 - -0.2 2,656,664 + +0.4 2,656,664 + -0.3 2,656,716 + -1.2 2,656,968 - HP15_2517 0.10 +0.2 2,657,038 - HP15_2517 0.14 -0.9 2,657,052 + HP15_2517 0.14 -0.3 2,657,104 + HP15_2517 0.17 +0.7 2,657,166 - HP15_2517 0.20 -0.1 2,657,243 - HP15_2517 0.23 +1.1 2,657,261 - HP15_2517 0.24 +0.6 2,657,571 + HP15_2517 0.39 +0.8 2,657,785 - HP15_2517 0.49 -0.7 2,657,886 - HP15_2517 0.54 +0.3 2,657,914 + HP15_2517 0.56 -0.1 2,657,961 + HP15_2517 0.58 +0.1 2,658,034 - HP15_2517 0.61 -0.3 2,658,044 + HP15_2517 0.62 -0.0 2,658,060 - HP15_2517 0.63 -1.0 2,658,243 - HP15_2517 0.71 +0.1 2,658,308 + HP15_2517 0.74 -0.3 2,658,387 + HP15_2517 0.78 +1.1 2,658,462 + HP15_2517 0.82 +0.4 2,658,576 + HP15_2517 0.87 +0.1 2,658,681 + -0.3 2,658,764 - +0.4 2,658,850 + -0.7 2,658,850 + -0.1 2,658,850 + -0.0
Or see this region's nucleotide sequence