Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02500

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02490 and PGA1_c02500 are separated by 7 nucleotidesPGA1_c02500 and PGA1_c02510 are separated by 163 nucleotides PGA1_c02490: PGA1_c02490 - sporulation protein R-like protein, at 232,303 to 233,781 _c02490 PGA1_c02500: PGA1_c02500 - transcriptional regulator, GntR family, at 233,789 to 234,454 _c02500 PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733 _c02510 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 232.814 kb on - strand, within PGA1_c02490at 232.850 kb on + strand, within PGA1_c02490at 232.944 kb on - strand, within PGA1_c02490at 232.946 kb on + strand, within PGA1_c02490at 232.946 kb on + strand, within PGA1_c02490at 232.946 kb on + strand, within PGA1_c02490at 232.954 kb on - strand, within PGA1_c02490at 232.954 kb on - strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.968 kb on + strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 233.046 kb on + strand, within PGA1_c02490at 233.047 kb on - strand, within PGA1_c02490at 233.054 kb on - strand, within PGA1_c02490at 233.054 kb on - strand, within PGA1_c02490at 233.054 kb on - strand, within PGA1_c02490at 233.070 kb on - strand, within PGA1_c02490at 233.078 kb on - strand, within PGA1_c02490at 233.093 kb on - strand, within PGA1_c02490at 233.139 kb on - strand, within PGA1_c02490at 233.186 kb on - strand, within PGA1_c02490at 233.192 kb on + strand, within PGA1_c02490at 233.196 kb on + strand, within PGA1_c02490at 233.228 kb on + strand, within PGA1_c02490at 233.235 kb on - strand, within PGA1_c02490at 233.235 kb on - strand, within PGA1_c02490at 233.242 kb on - strand, within PGA1_c02490at 233.244 kb on + strand, within PGA1_c02490at 233.325 kb on + strand, within PGA1_c02490at 233.353 kb on + strand, within PGA1_c02490at 233.426 kb on + strand, within PGA1_c02490at 233.459 kb on - strand, within PGA1_c02490at 233.495 kb on - strand, within PGA1_c02490at 233.572 kb on + strand, within PGA1_c02490at 233.603 kb on - strand, within PGA1_c02490at 233.634 kb on + strandat 233.634 kb on + strandat 233.634 kb on + strandat 233.634 kb on + strandat 233.642 kb on - strandat 233.642 kb on - strandat 233.669 kb on - strandat 233.681 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.761 kb on - strandat 233.795 kb on + strandat 233.812 kb on - strandat 233.911 kb on + strand, within PGA1_c02500at 234.014 kb on - strand, within PGA1_c02500at 234.019 kb on + strand, within PGA1_c02500at 234.034 kb on - strand, within PGA1_c02500at 234.133 kb on + strand, within PGA1_c02500at 234.146 kb on - strand, within PGA1_c02500at 234.237 kb on + strand, within PGA1_c02500at 234.245 kb on - strand, within PGA1_c02500at 234.245 kb on - strand, within PGA1_c02500at 234.255 kb on - strand, within PGA1_c02500at 234.266 kb on + strand, within PGA1_c02500at 234.271 kb on + strand, within PGA1_c02500at 234.304 kb on + strand, within PGA1_c02500at 234.423 kb on + strandat 234.484 kb on - strandat 234.590 kb on + strandat 234.600 kb on - strandat 234.662 kb on + strandat 234.695 kb on + strandat 234.695 kb on + strandat 234.703 kb on - strandat 234.703 kb on - strandat 234.703 kb on - strandat 234.734 kb on + strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.759 kb on - strand, within PGA1_c02510at 234.764 kb on - strand, within PGA1_c02510at 234.819 kb on - strand, within PGA1_c02510at 234.865 kb on - strand, within PGA1_c02510at 234.883 kb on + strand, within PGA1_c02510at 234.891 kb on + strand, within PGA1_c02510at 234.949 kb on - strand, within PGA1_c02510at 234.956 kb on - strand, within PGA1_c02510at 234.972 kb on - strand, within PGA1_c02510at 234.972 kb on - strand, within PGA1_c02510at 234.972 kb on - strand, within PGA1_c02510at 235.008 kb on - strand, within PGA1_c02510at 235.008 kb on - strand, within PGA1_c02510at 235.066 kb on + strand, within PGA1_c02510at 235.074 kb on - strand, within PGA1_c02510at 235.091 kb on + strand, within PGA1_c02510at 235.091 kb on + strand, within PGA1_c02510at 235.110 kb on - strand, within PGA1_c02510at 235.186 kb on + strand, within PGA1_c02510at 235.188 kb on + strand, within PGA1_c02510at 235.188 kb on + strand, within PGA1_c02510at 235.231 kb on + strand, within PGA1_c02510at 235.242 kb on + strand, within PGA1_c02510at 235.351 kb on + strand, within PGA1_c02510at 235.353 kb on + strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.382 kb on + strand, within PGA1_c02510at 235.390 kb on - strand, within PGA1_c02510

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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232,814 - PGA1_c02490 0.35 +4.4
232,850 + PGA1_c02490 0.37 +1.2
232,944 - PGA1_c02490 0.43 -0.9
232,946 + PGA1_c02490 0.43 +0.2
232,946 + PGA1_c02490 0.43 -0.8
232,946 + PGA1_c02490 0.43 -1.3
232,954 - PGA1_c02490 0.44 -2.9
232,954 - PGA1_c02490 0.44 +1.3
232,956 + PGA1_c02490 0.44 +1.3
232,956 + PGA1_c02490 0.44 +1.9
232,956 + PGA1_c02490 0.44 -1.8
232,956 + PGA1_c02490 0.44 +1.9
232,964 - PGA1_c02490 0.45 +4.4
232,964 - PGA1_c02490 0.45 +1.1
232,964 - PGA1_c02490 0.45 +2.3
232,964 - PGA1_c02490 0.45 +1.1
232,964 - PGA1_c02490 0.45 +2.7
232,964 - PGA1_c02490 0.45 -0.5
232,964 - PGA1_c02490 0.45 +1.3
232,964 - PGA1_c02490 0.45 -0.5
232,964 - PGA1_c02490 0.45 -2.2
232,968 + PGA1_c02490 0.45 -1.4
232,976 - PGA1_c02490 0.46 +1.2
232,976 - PGA1_c02490 0.46 -1.1
232,976 - PGA1_c02490 0.46 +1.6
232,976 - PGA1_c02490 0.46 -1.8
233,046 + PGA1_c02490 0.50 +0.6
233,047 - PGA1_c02490 0.50 -1.6
233,054 - PGA1_c02490 0.51 +0.1
233,054 - PGA1_c02490 0.51 +0.1
233,054 - PGA1_c02490 0.51 +2.8
233,070 - PGA1_c02490 0.52 +1.6
233,078 - PGA1_c02490 0.52 -0.8
233,093 - PGA1_c02490 0.53 -0.5
233,139 - PGA1_c02490 0.57 +1.1
233,186 - PGA1_c02490 0.60 +0.8
233,192 + PGA1_c02490 0.60 +0.1
233,196 + PGA1_c02490 0.60 +0.2
233,228 + PGA1_c02490 0.63 -0.4
233,235 - PGA1_c02490 0.63 -1.9
233,235 - PGA1_c02490 0.63 +0.2
233,242 - PGA1_c02490 0.63 +1.1
233,244 + PGA1_c02490 0.64 -0.2
233,325 + PGA1_c02490 0.69 -0.7
233,353 + PGA1_c02490 0.71 +1.1
233,426 + PGA1_c02490 0.76 -1.8
233,459 - PGA1_c02490 0.78 -0.5
233,495 - PGA1_c02490 0.81 -0.4
233,572 + PGA1_c02490 0.86 -0.9
233,603 - PGA1_c02490 0.88 +1.9
233,634 + -1.1
233,634 + -1.8
233,634 + +0.3
233,634 + -1.2
233,642 - +0.9
233,642 - +1.7
233,669 - -1.8
233,681 + -0.5
233,732 + +1.4
233,732 + -0.4
233,732 + -2.3
233,732 + -0.5
233,732 + +2.9
233,732 + -2.2
233,732 + +1.5
233,740 - -0.9
233,740 - -2.4
233,740 - -1.9
233,740 - -1.4
233,761 - +0.1
233,795 + -0.3
233,812 - +2.0
233,911 + PGA1_c02500 0.18 +1.0
234,014 - PGA1_c02500 0.34 -1.5
234,019 + PGA1_c02500 0.35 +2.1
234,034 - PGA1_c02500 0.37 -1.2
234,133 + PGA1_c02500 0.52 +0.3
234,146 - PGA1_c02500 0.54 +0.3
234,237 + PGA1_c02500 0.67 -0.8
234,245 - PGA1_c02500 0.68 +0.3
234,245 - PGA1_c02500 0.68 -0.8
234,255 - PGA1_c02500 0.70 -0.9
234,266 + PGA1_c02500 0.72 +2.5
234,271 + PGA1_c02500 0.72 -1.3
234,304 + PGA1_c02500 0.77 +1.9
234,423 + +0.3
234,484 - +0.1
234,590 + +2.7
234,600 - +0.6
234,662 + -1.3
234,695 + -1.7
234,695 + +0.7
234,703 - -1.4
234,703 - -1.8
234,703 - +0.2
234,734 + PGA1_c02510 0.10 +1.9
234,742 - PGA1_c02510 0.11 -0.0
234,742 - PGA1_c02510 0.11 -2.2
234,742 - PGA1_c02510 0.11 +0.6
234,759 - PGA1_c02510 0.13 +0.3
234,764 - PGA1_c02510 0.13 +2.8
234,819 - PGA1_c02510 0.18 +1.5
234,865 - PGA1_c02510 0.22 -0.2
234,883 + PGA1_c02510 0.24 +1.6
234,891 + PGA1_c02510 0.24 +1.7
234,949 - PGA1_c02510 0.30 +0.0
234,956 - PGA1_c02510 0.30 +1.4
234,972 - PGA1_c02510 0.32 -1.5
234,972 - PGA1_c02510 0.32 -0.6
234,972 - PGA1_c02510 0.32 +1.4
235,008 - PGA1_c02510 0.35 -1.5
235,008 - PGA1_c02510 0.35 +2.6
235,066 + PGA1_c02510 0.40 +1.1
235,074 - PGA1_c02510 0.41 +2.4
235,091 + PGA1_c02510 0.42 +2.9
235,091 + PGA1_c02510 0.42 -0.9
235,110 - PGA1_c02510 0.44 +0.3
235,186 + PGA1_c02510 0.51 +2.2
235,188 + PGA1_c02510 0.51 +1.8
235,188 + PGA1_c02510 0.51 +1.8
235,231 + PGA1_c02510 0.55 -1.2
235,242 + PGA1_c02510 0.56 -1.0
235,351 + PGA1_c02510 0.66 +0.0
235,353 + PGA1_c02510 0.66 +0.3
235,369 - PGA1_c02510 0.67 -0.1
235,369 - PGA1_c02510 0.67 +1.6
235,369 - PGA1_c02510 0.67 +1.6
235,369 - PGA1_c02510 0.67 -1.6
235,382 + PGA1_c02510 0.68 +0.0
235,390 - PGA1_c02510 0.69 -2.5

Or see this region's nucleotide sequence