Strain Fitness in Shewanella amazonensis SB2B around Sama_3041

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
3,616,635	+		Sama_3039	0.63	-0.6
3,616,824	+		Sama_3039	0.84	-0.9
3,616,824	+		Sama_3039	0.84	+1.1
3,616,825	-		Sama_3039	0.84	+1.2
3,616,825	-		Sama_3039	0.84	+0.8
3,616,847	+		Sama_3039	0.86	+0.8
3,616,847	+		Sama_3039	0.86	+0.1
3,616,847	+		Sama_3039	0.86	+0.1
3,616,847	+		Sama_3039	0.86	+0.1
3,616,847	+		Sama_3039	0.86	-0.1
3,616,847	+		Sama_3039	0.86	-1.0
3,616,848	-		Sama_3039	0.86	-1.4
3,616,860	+		Sama_3039	0.88	+0.1
3,616,860	+		Sama_3039	0.88	-0.0
3,616,912	+				-0.0
3,616,969	+				-1.7
3,616,969	+				-1.0
3,616,970	-				-2.2
3,616,972	+				-0.7
3,616,973	-				-0.4
3,616,973	-				+0.4
3,617,011	+				-0.3
3,617,011	+				-0.1
3,617,011	+				+0.9
3,617,011	+				+0.0
3,617,011	+				+0.5
3,617,011	+				-1.3
3,617,012	-				+0.5
3,617,012	-				-0.1
3,617,012	-				-0.1
3,617,012	-				+0.5
3,617,012	-				-0.0
3,617,012	-				+0.7
3,617,012	-				+0.4
3,617,012	-				+0.8
3,617,012	-				-1.1
3,617,018	+				-0.3
3,617,018	+				+0.5
3,617,019	-				-0.4
3,617,019	-				+0.3
3,617,059	+				-1.9
3,617,059	+				-0.4
3,617,059	+				+1.0
3,617,074	+				+1.5
3,617,074	+				+1.4
3,617,074	+				-0.1
3,617,083	-				+1.3
3,617,083	-				-0.9
3,617,086	-				-1.7
3,617,100	+				-0.3
3,617,130	+				+0.5
3,617,152	+				+0.3
3,617,152	+				-0.4
3,617,153	-				+0.8
3,617,163	+				-1.4
3,617,164	-				+0.5
3,617,164	-				-1.8
3,617,172	+				-1.1
3,617,172	+				+0.7
3,617,172	+				+0.1
3,617,173	-				+1.2
3,617,173	-				+0.2
3,617,173	-				+0.5
3,617,173	-				-0.6
3,617,176	+				+0.0
3,617,177	-				+1.7
3,617,216	-				+0.8
3,617,255	+				-0.6
3,617,255	+				+0.1
3,617,255	+				+0.6
3,617,255	+				-1.4
3,617,255	+				+0.6
3,617,255	+				-1.4
3,617,255	+				+0.1
3,617,255	+				+1.5
3,617,255	+				-2.5
3,617,255	+				-2.1
3,617,255	+				+2.0
3,617,255	+				-0.7
3,617,255	+				+0.3
3,617,255	+				-0.1
3,617,255	+				-0.5
3,617,255	+				-0.2
3,617,255	+				+0.4
3,617,255	+				+0.1
3,617,255	+				-0.4
3,617,255	+				-0.3
3,617,255	+				-0.4
3,617,255	+				-0.4
3,617,255	+				+0.0
3,617,255	+				+0.2
3,617,255	+				-0.3
3,617,255	+				-0.3
3,617,255	+				-1.1
3,617,255	+				+0.0
3,617,255	+				-1.5
3,617,255	+				-2.9
3,617,255	+				-0.2
3,617,255	+				+0.5
3,617,255	+				-0.1
3,617,255	+				-0.3
3,617,255	+				-1.1
3,617,255	+				-0.5
3,617,256	-				-1.1
3,617,256	-				-0.4
3,617,256	-				+0.9
3,617,256	-				-0.1
3,617,256	-				-0.3
3,617,256	-				+0.1
3,617,256	-				-0.1
3,617,256	-				-0.9
3,617,256	-				-1.1
3,617,256	-				+0.2
3,617,256	-				-1.5
3,617,256	-				+0.6
3,617,256	-				+0.0
3,617,256	-				-1.6
3,617,270	+				+0.1
3,617,270	+				-0.9
3,617,270	+				+0.2
3,617,271	-				-0.7
3,617,284	+		Sama_3040	0.17	+0.2
3,617,317	+		Sama_3040	0.34	+0.3
3,617,317	+		Sama_3040	0.34	-0.5
3,617,320	+		Sama_3040	0.35	+0.1
3,617,320	+		Sama_3040	0.35	-1.0
3,617,320	+		Sama_3040	0.35	-2.5
3,617,320	+		Sama_3040	0.35	+1.3
3,617,368	+		Sama_3040	0.60	+1.7
3,617,368	+		Sama_3040	0.60	+0.2
3,617,368	+		Sama_3040	0.60	-1.0
3,617,369	-		Sama_3040	0.61	+0.2
3,617,426	+				-0.5
3,617,426	+				-1.3
3,617,426	+				-0.0
3,617,429	+				+0.7
3,617,444	+				-1.1
3,617,451	+				-0.1
3,617,452	-				+1.7
3,617,495	-				-2.3
3,617,501	+				-0.5
3,617,501	+				-0.7
3,617,501	+				+2.3
3,617,501	+				+0.6
3,617,502	-				-0.3
3,617,531	+				-0.0
3,617,532	-				-0.1
3,617,563	+				+0.5
3,617,563	+				-2.0
3,617,563	+				-0.0
3,617,563	+				-2.7
3,617,564	-				-0.8
3,617,564	-				+0.0
3,617,564	-				-1.3
3,617,564	-				-0.7
3,617,594	+				+0.5
3,617,595	-				+0.3
3,619,950	-				-2.0
3,619,950	-				-0.3
3,619,950	-				-0.9
3,619,985	-		Sama_3042	0.11	-0.9
3,620,023	-		Sama_3042	0.14	-1.3
3,620,023	-		Sama_3042	0.14	-2.0
3,620,023	-		Sama_3042	0.14	-0.9
3,620,023	-		Sama_3042	0.14	-0.9
3,620,023	-		Sama_3042	0.14	+1.0
3,620,023	-		Sama_3042	0.14	-0.9
3,620,023	-		Sama_3042	0.14	-2.2
3,620,023	-		Sama_3042	0.14	-1.2
3,620,044	-		Sama_3042	0.16	-1.0
3,620,044	-		Sama_3042	0.16	-0.8
3,620,044	-		Sama_3042	0.16	-1.3
3,620,074	-		Sama_3042	0.18	-2.3
3,620,136	-		Sama_3042	0.23	-0.7
3,620,141	-		Sama_3042	0.24	-0.8
3,620,282	-		Sama_3042	0.36	-1.1
3,620,282	-		Sama_3042	0.36	-1.1
3,620,294	-		Sama_3042	0.37	-1.4
3,620,294	-		Sama_3042	0.37	-2.4
3,620,301	-		Sama_3042	0.38	-0.5
3,620,301	-		Sama_3042	0.38	-1.7
3,620,301	-		Sama_3042	0.38	-1.1
3,620,323	-		Sama_3042	0.39	-0.2
3,620,323	-		Sama_3042	0.39	-1.7
3,620,365	-		Sama_3042	0.43	-0.9
3,620,365	-		Sama_3042	0.43	-2.9
3,620,365	-		Sama_3042	0.43	+0.4
3,620,475	-		Sama_3042	0.52	-1.3
3,620,475	-		Sama_3042	0.52	-0.5
3,620,511	-		Sama_3042	0.55	-1.6
3,620,524	-		Sama_3042	0.56	-1.5
3,620,534	-		Sama_3042	0.57	-1.3
3,620,534	-		Sama_3042	0.57	-1.5
3,620,534	-		Sama_3042	0.57	-1.1
3,620,534	-		Sama_3042	0.57	-1.3
3,620,534	-		Sama_3042	0.57	-1.9
3,620,534	-		Sama_3042	0.57	+0.3
3,620,534	-		Sama_3042	0.57	-0.9
3,620,534	-		Sama_3042	0.57	-0.8
3,620,562	-		Sama_3042	0.60	-0.3
3,620,564	-		Sama_3042	0.60	-1.3
3,620,564	-		Sama_3042	0.60	-0.1
3,620,564	-		Sama_3042	0.60	-2.5
3,620,564	-		Sama_3042	0.60	-2.0
3,620,564	-		Sama_3042	0.60	-1.0
3,620,564	-		Sama_3042	0.60	-0.5
3,620,564	-		Sama_3042	0.60	-1.0
3,620,564	-		Sama_3042	0.60	-0.5
3,620,603	-		Sama_3042	0.63	-1.8
3,620,684	-		Sama_3042	0.70	+0.3
3,620,684	-		Sama_3042	0.70	-0.0
3,620,684	-		Sama_3042	0.70	-0.3
3,620,684	-		Sama_3042	0.70	-0.2
3,620,684	-		Sama_3042	0.70	-0.9
3,620,744	-		Sama_3042	0.75	-0.6
3,620,744	-		Sama_3042	0.75	-1.6
3,620,744	-		Sama_3042	0.75	-1.6
3,620,832	-		Sama_3042	0.83	-2.3
3,620,832	-		Sama_3042	0.83	-2.2