Strain Fitness in Shewanella amazonensis SB2B around Sama_2645

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
3,168,333	+		Sama_2644	0.35	+1.4
3,168,333	+		Sama_2644	0.35	+2.7
3,168,334	-		Sama_2644	0.35	+1.9
3,168,354	+		Sama_2644	0.37	+1.4
3,168,355	-		Sama_2644	0.37	+2.2
3,168,355	-		Sama_2644	0.37	+1.7
3,168,355	-		Sama_2644	0.37	+1.0
3,168,357	-		Sama_2644	0.37	+1.8
3,168,357	-		Sama_2644	0.37	+1.8
3,168,357	-		Sama_2644	0.37	+1.7
3,168,357	-		Sama_2644	0.37	+3.4
3,168,357	-		Sama_2644	0.37	+2.3
3,168,357	-		Sama_2644	0.37	+3.1
3,168,369	+		Sama_2644	0.38	-0.0
3,168,369	+		Sama_2644	0.38	+2.2
3,168,370	-		Sama_2644	0.38	+1.9
3,168,370	-		Sama_2644	0.38	+2.2
3,168,389	-		Sama_2644	0.39	+2.3
3,168,421	-		Sama_2644	0.42	+1.7
3,168,528	+		Sama_2644	0.49	+2.0
3,168,529	-		Sama_2644	0.50	+1.7
3,168,591	-		Sama_2644	0.54	+2.5
3,168,659	+		Sama_2644	0.59	+0.1
3,168,659	+		Sama_2644	0.59	+1.5
3,168,659	+		Sama_2644	0.59	+2.2
3,168,659	+		Sama_2644	0.59	+2.1
3,168,659	+		Sama_2644	0.59	+1.1
3,168,659	+		Sama_2644	0.59	+1.6
3,168,659	+		Sama_2644	0.59	+2.2
3,168,659	+		Sama_2644	0.59	+0.8
3,168,659	+		Sama_2644	0.59	+1.6
3,168,659	+		Sama_2644	0.59	+2.0
3,168,659	+		Sama_2644	0.59	+1.5
3,168,659	+		Sama_2644	0.59	+2.1
3,168,659	+		Sama_2644	0.59	+1.2
3,168,660	-		Sama_2644	0.59	+2.3
3,168,660	-		Sama_2644	0.59	+2.4
3,168,660	-		Sama_2644	0.59	+2.4
3,168,660	-		Sama_2644	0.59	+1.8
3,168,660	-		Sama_2644	0.59	+2.1
3,168,660	-		Sama_2644	0.59	+2.4
3,168,660	-		Sama_2644	0.59	+2.5
3,168,660	-		Sama_2644	0.59	+2.2
3,168,660	-		Sama_2644	0.59	+2.1
3,168,660	-		Sama_2644	0.59	+2.0
3,168,660	-		Sama_2644	0.59	+1.7
3,168,660	-		Sama_2644	0.59	+1.7
3,168,660	-		Sama_2644	0.59	+2.3
3,168,660	-		Sama_2644	0.59	+2.3
3,168,660	-		Sama_2644	0.59	+1.1
3,168,660	-		Sama_2644	0.59	+1.0
3,168,660	-		Sama_2644	0.59	+2.6
3,168,660	-		Sama_2644	0.59	+2.6
3,168,660	-		Sama_2644	0.59	+1.7
3,168,660	-		Sama_2644	0.59	+1.3
3,168,660	-		Sama_2644	0.59	+2.4
3,168,660	-		Sama_2644	0.59	+2.0
3,168,660	-		Sama_2644	0.59	+1.4
3,168,660	-		Sama_2644	0.59	+2.2
3,168,660	-		Sama_2644	0.59	+1.4
3,168,660	-		Sama_2644	0.59	-0.5
3,168,683	+		Sama_2644	0.61	+1.1
3,168,683	+		Sama_2644	0.61	+0.7
3,168,684	-		Sama_2644	0.61	+2.3
3,168,819	-		Sama_2644	0.71	+0.3
3,168,866	-		Sama_2644	0.74	+2.2
3,168,908	+		Sama_2644	0.78	+1.9
3,168,979	+		Sama_2644	0.83	+1.9
3,168,980	-		Sama_2644	0.83	+1.5
3,169,019	+		Sama_2644	0.86	+1.9
3,169,020	-		Sama_2644	0.86	+2.3
3,169,020	-		Sama_2644	0.86	+1.1
3,169,022	+		Sama_2644	0.86	+1.8
3,169,022	+		Sama_2644	0.86	+1.7
3,169,022	+		Sama_2644	0.86	+1.3
3,169,022	+		Sama_2644	0.86	+2.0
3,169,022	+		Sama_2644	0.86	+2.5
3,169,023	-		Sama_2644	0.86	+1.7
3,169,023	-		Sama_2644	0.86	+1.7
3,169,023	-		Sama_2644	0.86	+2.6
3,169,023	-		Sama_2644	0.86	+2.5
3,169,023	-		Sama_2644	0.86	+2.3
3,169,023	-		Sama_2644	0.86	+2.0
3,169,023	-		Sama_2644	0.86	+1.6
3,169,023	-		Sama_2644	0.86	+2.1
3,169,023	-		Sama_2644	0.86	+2.4
3,169,023	-		Sama_2644	0.86	+1.7
3,169,023	-		Sama_2644	0.86	+2.1
3,169,023	-		Sama_2644	0.86	+1.6
3,169,023	-		Sama_2644	0.86	+1.7
3,169,026	+		Sama_2644	0.86	+0.3
3,169,026	+		Sama_2644	0.86	+0.5
3,169,026	+		Sama_2644	0.86	+1.7
3,169,027	-		Sama_2644	0.86	+2.0
3,169,027	-		Sama_2644	0.86	+2.2
3,169,027	-		Sama_2644	0.86	+2.1
3,169,040	+		Sama_2644	0.87	+2.0
3,169,040	+		Sama_2644	0.87	+1.0
3,169,040	+		Sama_2644	0.87	+0.8
3,169,040	+		Sama_2644	0.87	+1.3
3,169,041	-		Sama_2644	0.87	+1.8
3,169,066	+		Sama_2644	0.89	+1.7
3,169,067	-		Sama_2644	0.89	+1.1
3,169,067	-		Sama_2644	0.89	+2.3
3,169,102	-				+2.3
3,169,111	+				+1.8
3,169,126	-				+1.7
3,169,147	-				+1.0
3,169,166	-				+1.4
3,169,166	-				+2.5
3,169,174	+				+2.0
3,169,191	-				+1.8
3,169,281	-				+0.2
3,169,281	-				+1.7
3,169,281	-				-0.2
3,169,366	+		Sama_2645	0.20	+1.6
3,169,366	+		Sama_2645	0.20	+1.1
3,169,366	+		Sama_2645	0.20	+2.2
3,169,367	-		Sama_2645	0.20	-3.4
3,169,367	-		Sama_2645	0.20	-2.4
3,169,367	-		Sama_2645	0.20	-1.5
3,169,385	+		Sama_2645	0.22	-0.1
3,169,385	+		Sama_2645	0.22	+1.0
3,169,386	-		Sama_2645	0.22	-1.7
3,169,386	-		Sama_2645	0.22	-2.3
3,169,386	-		Sama_2645	0.22	-2.1
3,169,386	-		Sama_2645	0.22	-0.9
3,169,432	-		Sama_2645	0.28	-3.4
3,169,432	-		Sama_2645	0.28	-2.5
3,169,480	+		Sama_2645	0.35	+0.8
3,169,481	-		Sama_2645	0.35	-0.9
3,169,520	+		Sama_2645	0.40	+1.7
3,169,520	+		Sama_2645	0.40	+1.5
3,169,521	-		Sama_2645	0.40	-1.8
3,169,521	-		Sama_2645	0.40	-1.9
3,169,582	+		Sama_2645	0.48	+1.3
3,169,582	+		Sama_2645	0.48	-1.1
3,169,641	+		Sama_2645	0.56	+1.9
3,169,641	+		Sama_2645	0.56	+0.9
3,169,649	-		Sama_2645	0.57	-1.4
3,169,748	+		Sama_2645	0.70	-1.0
3,169,749	-		Sama_2645	0.70	-1.4
3,169,749	-		Sama_2645	0.70	-1.3
3,169,789	+		Sama_2645	0.75	+0.8
3,169,790	-		Sama_2645	0.75	-3.5
3,169,790	-		Sama_2645	0.75	-2.0
3,169,790	-		Sama_2645	0.75	-1.9
3,169,790	-		Sama_2645	0.75	-3.8
3,169,790	-		Sama_2645	0.75	-2.6
3,169,840	-		Sama_2645	0.82	-2.1
3,169,875	+		Sama_2645	0.86	+1.0
3,169,876	-		Sama_2645	0.86	-2.6
3,169,876	-		Sama_2645	0.86	-2.4
3,169,886	-		Sama_2645	0.88	-3.2
3,169,908	+				+1.9
3,169,909	-				-0.8
3,169,911	+				+2.7
3,169,936	-				-1.6
3,169,938	+				+0.9
3,169,939	-				-4.2
3,169,939	-				-3.8
3,169,939	-				-1.9
3,169,939	-				-0.3
3,169,939	-				-1.8
3,169,939	-				-3.8
3,169,956	+				+1.4
3,169,956	+				+1.9
3,169,957	-				-2.2
3,169,980	+				+1.8
3,169,980	+				+2.1
3,169,980	+				+0.7
3,169,980	+				+1.3
3,169,980	+				+1.2
3,169,980	+				+1.6
3,169,980	+				+2.4
3,169,981	-				-3.2
3,169,981	-				-4.1
3,169,981	-				-1.3
3,169,981	-				-2.4
3,169,981	-				-3.9
3,169,981	-				-1.8
3,169,981	-				-2.2
3,169,981	-				-1.1
3,169,981	-				-3.4
3,169,981	-				-4.0
3,169,981	-				-2.4
3,169,981	-				-0.9
3,169,981	-				-1.6
3,169,981	-				-4.3
3,169,981	-				-0.4
3,169,981	-				-2.9
3,169,981	-				-1.4
3,169,981	-				-2.6
3,170,065	+				-0.8
3,170,080	+				-0.5
3,170,089	+				-3.7
3,170,125	-				+0.5
3,170,161	+				-1.9
3,170,161	+				-2.0
3,170,161	+				-2.9
3,170,162	-				-0.7
3,170,165	+				-1.1
3,170,165	+				-1.7
3,170,165	-				-1.8
3,170,165	+				-1.2
3,170,166	-				-1.9
3,170,166	-				-1.9
3,170,264	-				-2.3
3,170,274	-				-1.7
3,170,338	+				+0.2
3,170,339	-				-3.8
3,170,509	-		Sama_2646	0.16	-4.4
3,170,512	-		Sama_2646	0.17	-1.9
3,170,512	-		Sama_2646	0.17	-3.9
3,170,512	-		Sama_2646	0.17	-1.6
3,170,512	-		Sama_2646	0.17	-2.3
3,170,512	-		Sama_2646	0.17	-1.3
3,170,512	-		Sama_2646	0.17	-2.0
3,170,624	-		Sama_2646	0.37	-2.3
3,170,624	-		Sama_2646	0.37	-3.2
3,170,624	-		Sama_2646	0.37	-1.8
3,170,714	-		Sama_2646	0.54	-3.7
3,170,714	-		Sama_2646	0.54	-2.6
3,170,714	-		Sama_2646	0.54	-0.8
3,170,717	+		Sama_2646	0.54	-3.2
3,170,717	+		Sama_2646	0.54	+0.0
3,170,717	+		Sama_2646	0.54	-1.5
3,170,718	-		Sama_2646	0.54	-3.4
3,170,718	-		Sama_2646	0.54	-3.0
3,170,718	-		Sama_2646	0.54	-1.1
3,170,718	-		Sama_2646	0.54	-2.4
3,170,718	-		Sama_2646	0.54	-3.4
3,170,718	-		Sama_2646	0.54	-2.2
3,170,718	-		Sama_2646	0.54	-2.7
3,170,718	-		Sama_2646	0.54	-1.9
3,170,718	-		Sama_2646	0.54	-3.4
3,170,718	-		Sama_2646	0.54	-1.6
3,170,718	-		Sama_2646	0.54	-2.5
3,170,718	-		Sama_2646	0.54	-0.3
3,170,720	-		Sama_2646	0.55	-2.9
3,170,804	-		Sama_2646	0.70	-3.4
3,170,804	-		Sama_2646	0.70	-2.6
3,170,804	-		Sama_2646	0.70	-2.6
3,170,804	-		Sama_2646	0.70	-2.7
3,170,804	-		Sama_2646	0.70	-2.6
3,170,804	-		Sama_2646	0.70	-1.6
3,170,804	-		Sama_2646	0.70	-2.1
3,170,804	-		Sama_2646	0.70	-2.4
3,170,804	-		Sama_2646	0.70	-2.2
3,170,804	-		Sama_2646	0.70	-1.9
3,170,879	-		Sama_2646	0.84	-1.5
3,170,879	-		Sama_2646	0.84	-1.3
3,170,879	-		Sama_2646	0.84	-1.3
3,170,879	-		Sama_2646	0.84	-3.4