Strain Fitness in Shewanella amazonensis SB2B around Sama_2115

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
2,555,980	+		Sama_2113	0.54	+0.0
2,555,981	-		Sama_2113	0.54	+1.4
2,556,034	+		Sama_2113	0.65	-1.6
2,556,035	-		Sama_2113	0.65	-0.3
2,556,036	+		Sama_2113	0.65	-0.2
2,556,036	+		Sama_2113	0.65	+0.7
2,556,055	+		Sama_2113	0.69	-0.8
2,556,055	+		Sama_2113	0.69	-0.2
2,556,056	-		Sama_2113	0.69	-0.5
2,556,056	-		Sama_2113	0.69	+1.5
2,556,110	+		Sama_2113	0.80	+1.1
2,556,112	+		Sama_2113	0.81	+1.1
2,556,112	+		Sama_2113	0.81	-0.3
2,556,130	+		Sama_2113	0.84	+1.3
2,556,130	+		Sama_2113	0.84	-1.4
2,556,174	+				-0.0
2,556,174	+				-1.9
2,556,174	+				-0.0
2,556,211	+				+0.6
2,556,212	-				+1.6
2,556,236	-				-0.0
2,556,263	+				+1.0
2,556,263	+				+0.6
2,556,264	-				+0.6
2,556,389	+		Sama_2114	0.31	+0.2
2,556,401	+		Sama_2114	0.33	-1.0
2,556,402	-		Sama_2114	0.33	-0.6
2,556,402	-		Sama_2114	0.33	+1.6
2,556,404	+		Sama_2114	0.34	-0.9
2,556,405	-		Sama_2114	0.34	-0.3
2,556,405	-		Sama_2114	0.34	-1.9
2,556,410	+		Sama_2114	0.35	-0.9
2,556,431	+		Sama_2114	0.38	-0.3
2,556,434	+		Sama_2114	0.39	+1.0
2,556,435	-		Sama_2114	0.39	+0.7
2,556,472	+		Sama_2114	0.46	+0.4
2,556,473	-		Sama_2114	0.46	-0.3
2,556,479	+		Sama_2114	0.47	-1.2
2,556,535	+		Sama_2114	0.57	-0.4
2,556,535	+		Sama_2114	0.57	+0.6
2,556,535	+		Sama_2114	0.57	-1.3
2,556,535	+		Sama_2114	0.57	-0.1
2,556,536	-		Sama_2114	0.57	+1.2
2,556,536	-		Sama_2114	0.57	-0.7
2,556,536	-		Sama_2114	0.57	+0.9
2,556,545	-		Sama_2114	0.59	-0.7
2,556,554	+		Sama_2114	0.60	-0.2
2,556,602	-		Sama_2114	0.69	+0.8
2,556,632	+		Sama_2114	0.74	-0.8
2,556,641	+		Sama_2114	0.76	-0.9
2,556,682	+		Sama_2114	0.83	-0.1
2,556,775	-				-0.1
2,556,820	+				-0.2
2,556,820	+				-0.2
2,556,908	+				-0.1
2,556,908	+				+0.6
2,556,908	+				-0.9
2,556,950	+				-1.2
2,556,951	-				+0.3
2,556,951	-				+0.6
2,556,956	+				+0.1
2,556,956	+				+0.5
2,557,017	+				-0.6
2,557,017	+				-1.5
2,557,017	+				+0.5
2,557,018	-				+0.3
2,557,134	+		Sama_2115	0.19	-0.5
2,557,134	+		Sama_2115	0.19	+0.3
2,557,166	-		Sama_2115	0.23	+0.7
2,557,250	+		Sama_2115	0.33	-0.6
2,557,251	-		Sama_2115	0.33	-0.6
2,557,251	-		Sama_2115	0.33	+0.5
2,557,251	-		Sama_2115	0.33	-0.0
2,557,263	-		Sama_2115	0.34	+0.3
2,557,334	+		Sama_2115	0.42	+0.5
2,557,334	+		Sama_2115	0.42	+0.3
2,557,335	-		Sama_2115	0.43	+1.4
2,557,443	+		Sama_2115	0.55	+0.5
2,557,443	+		Sama_2115	0.55	+0.1
2,557,443	+		Sama_2115	0.55	+0.6
2,557,444	-		Sama_2115	0.55	+1.4
2,557,444	-		Sama_2115	0.55	+0.4
2,557,444	-		Sama_2115	0.55	+0.8
2,557,444	-		Sama_2115	0.55	+0.8
2,557,460	+		Sama_2115	0.57	+0.9
2,557,460	+		Sama_2115	0.57	+0.1
2,557,462	+		Sama_2115	0.58	-0.4
2,557,462	+		Sama_2115	0.58	+0.2
2,557,500	+		Sama_2115	0.62	+1.5
2,557,500	+		Sama_2115	0.62	+0.2
2,557,500	+		Sama_2115	0.62	+0.5
2,557,500	+		Sama_2115	0.62	+0.2
2,557,575	+		Sama_2115	0.71	+0.1
2,557,644	-		Sama_2115	0.79	+0.0
2,557,679	+		Sama_2115	0.83	+0.6
2,557,680	-		Sama_2115	0.83	-1.2
2,557,680	-		Sama_2115	0.83	-1.1
2,557,716	+		Sama_2115	0.88	+0.1
2,557,716	+		Sama_2115	0.88	-0.1
2,557,716	+		Sama_2115	0.88	+0.6
2,557,717	-		Sama_2115	0.88	+2.1
2,557,717	-		Sama_2115	0.88	+0.6
2,557,717	-		Sama_2115	0.88	+0.7
2,557,750	+				+0.3
2,557,750	+				+1.4
2,557,765	+				-0.0
2,557,765	+				-0.6
2,557,765	+				+2.7
2,557,848	-				+0.4
2,557,848	-				-0.4
2,557,951	+				+0.1
2,557,951	+				-1.0
2,557,958	+				+0.4
2,557,958	+				+1.3
2,557,959	-				-1.2
2,557,959	-				+1.1
2,557,959	-				-1.0
2,557,989	+				-0.1
2,557,990	-				+0.1
2,558,200	+				-0.4
2,558,200	+				-0.1
2,558,200	+				-0.6
2,558,200	+				-1.7
2,558,201	-				+1.2
2,558,201	-				+0.1
2,558,201	-				+0.5
2,558,204	+				+0.4
2,558,251	+				+0.4
2,558,251	+				+1.2
2,558,251	+				-0.2
2,558,252	-				-0.4
2,558,285	+		Sama_2116	0.10	+0.8
2,558,353	-		Sama_2116	0.13	+0.8
2,558,504	-		Sama_2116	0.19	+0.1
2,558,607	+		Sama_2116	0.23	+0.2
2,558,607	+		Sama_2116	0.23	-1.0
2,558,607	+		Sama_2116	0.23	-0.7
2,558,607	+		Sama_2116	0.23	-0.0
2,558,608	-		Sama_2116	0.23	-0.3
2,558,608	-		Sama_2116	0.23	-0.4
2,558,611	+		Sama_2116	0.23	-0.0
2,558,611	+		Sama_2116	0.23	-1.0
2,558,611	+		Sama_2116	0.23	-1.2
2,558,611	+		Sama_2116	0.23	-0.2
2,558,612	-		Sama_2116	0.23	+0.1
2,558,612	-		Sama_2116	0.23	-0.3
2,558,612	-		Sama_2116	0.23	-1.2
2,558,612	-		Sama_2116	0.23	-1.2
2,558,612	-		Sama_2116	0.23	+1.5
2,558,637	+		Sama_2116	0.24	-0.4
2,558,638	-		Sama_2116	0.24	-0.2
2,558,638	-		Sama_2116	0.24	-0.3
2,558,638	-		Sama_2116	0.24	-0.8
2,558,638	-		Sama_2116	0.24	-0.7
2,558,657	+		Sama_2116	0.24	-0.0
2,558,658	-		Sama_2116	0.24	-0.8
2,558,658	-		Sama_2116	0.24	-0.4
2,558,658	-		Sama_2116	0.24	-0.3
2,558,658	-		Sama_2116	0.24	+0.6
2,558,773	+		Sama_2116	0.29	+0.2
2,558,793	-		Sama_2116	0.30	-0.3
2,558,793	-		Sama_2116	0.30	+0.8
2,558,802	+		Sama_2116	0.30	-0.6
2,558,803	-		Sama_2116	0.30	+0.7
2,558,803	-		Sama_2116	0.30	-0.5