Strain Fitness in Shewanella amazonensis SB2B around Sama_1786

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
2,176,995	-		Sama_1784	0.88	+0.4
2,177,018	+				+0.7
2,177,018	+				-2.0
2,177,093	+				+0.3
2,177,174	+				-1.5
2,177,174	+				+0.3
2,177,174	+				+0.1
2,177,193	+				+1.1
2,177,193	+				+0.5
2,177,194	-				-0.1
2,177,195	+				-2.3
2,177,195	+				+0.3
2,177,195	+				+1.2
2,177,195	+				-0.8
2,177,196	-				-0.5
2,177,210	+				+0.5
2,177,210	+				-0.0
2,177,247	+				-0.1
2,177,267	+				-0.9
2,177,268	-				-0.1
2,177,281	-				+0.1
2,177,294	+				+1.1
2,177,294	+				-0.3
2,177,294	+				-0.1
2,177,295	-				+0.7
2,177,309	+				-0.2
2,177,381	+				-0.3
2,177,425	+				-1.4
2,177,426	-				-0.2
2,177,426	-				-0.6
2,177,474	+		Sama_1785	0.20	+1.1
2,177,485	+		Sama_1785	0.23	+0.0
2,177,485	+		Sama_1785	0.23	-0.8
2,177,486	-		Sama_1785	0.23	-0.2
2,177,486	-		Sama_1785	0.23	+0.1
2,177,670	+		Sama_1785	0.68	-0.1
2,177,727	+		Sama_1785	0.82	+0.2
2,177,728	-		Sama_1785	0.83	-0.0
2,177,736	-		Sama_1785	0.85	-0.1
2,177,736	-		Sama_1785	0.85	-1.0
2,177,736	-		Sama_1785	0.85	-0.7
2,177,736	-		Sama_1785	0.85	+0.9
2,177,800	+				-0.8
2,177,820	-				+0.9
2,177,853	+				-1.7
2,177,854	-				-0.5
2,177,862	-				-0.6
2,177,862	-				-0.0
2,177,862	-				-0.0
2,177,871	-				+0.3
2,177,966	+				-0.4
2,177,967	-				+0.9
2,177,967	-				+0.1
2,177,978	+				-1.2
2,177,993	+				-0.5
2,178,120	-		Sama_1786	0.13	-0.4
2,178,122	+		Sama_1786	0.13	-0.0
2,178,123	-		Sama_1786	0.13	+0.3
2,178,142	-		Sama_1786	0.14	-0.3
2,178,146	+		Sama_1786	0.14	-0.1
2,178,147	-		Sama_1786	0.14	-0.4
2,178,147	-		Sama_1786	0.14	-0.3
2,178,147	-		Sama_1786	0.14	-0.5
2,178,164	-		Sama_1786	0.15	-0.9
2,178,199	-		Sama_1786	0.16	+0.3
2,178,199	-		Sama_1786	0.16	+0.0
2,178,211	+		Sama_1786	0.17	-0.4
2,178,212	-		Sama_1786	0.17	-1.0
2,178,224	+		Sama_1786	0.18	-0.8
2,178,225	-		Sama_1786	0.18	+0.5
2,178,225	-		Sama_1786	0.18	+0.4
2,178,385	-		Sama_1786	0.24	-0.7
2,178,385	-		Sama_1786	0.24	+1.0
2,178,470	+		Sama_1786	0.28	-0.3
2,178,471	-		Sama_1786	0.28	-0.1
2,178,474	-		Sama_1786	0.28	-0.9
2,178,483	+		Sama_1786	0.28	+1.7
2,178,543	+		Sama_1786	0.31	+0.5
2,178,577	+		Sama_1786	0.32	-0.1
2,178,578	-		Sama_1786	0.32	-0.9
2,178,578	-		Sama_1786	0.32	-1.6
2,178,578	-		Sama_1786	0.32	+0.4
2,178,584	+		Sama_1786	0.33	-1.0
2,178,584	+		Sama_1786	0.33	-1.4
2,178,585	-		Sama_1786	0.33	-1.2
2,178,629	-		Sama_1786	0.35	-0.4
2,178,643	-		Sama_1786	0.35	-0.7
2,178,707	+		Sama_1786	0.38	+0.4
2,178,708	-		Sama_1786	0.38	-0.3
2,178,708	-		Sama_1786	0.38	+0.1
2,178,730	+		Sama_1786	0.39	+0.1
2,178,731	-		Sama_1786	0.39	-0.2
2,178,770	+		Sama_1786	0.41	+0.6
2,178,777	+		Sama_1786	0.41	-0.5
2,178,778	-		Sama_1786	0.41	-0.7
2,178,865	-		Sama_1786	0.45	+1.0
2,178,871	-		Sama_1786	0.45	-1.4
2,178,871	-		Sama_1786	0.45	+0.2
2,178,908	-		Sama_1786	0.46	-0.8
2,178,908	-		Sama_1786	0.46	-1.8
2,178,924	+		Sama_1786	0.47	-0.9
2,179,040	+		Sama_1786	0.52	-0.5
2,179,041	-		Sama_1786	0.52	-0.6
2,179,049	+		Sama_1786	0.52	-0.4
2,179,050	-		Sama_1786	0.52	+0.4
2,179,078	-		Sama_1786	0.54	-2.1
2,179,078	-		Sama_1786	0.54	-0.5
2,179,101	+		Sama_1786	0.55	+0.2
2,179,128	+		Sama_1786	0.56	-0.4
2,179,136	+		Sama_1786	0.56	-0.2
2,179,164	+		Sama_1786	0.57	-0.8
2,179,296	+		Sama_1786	0.63	+0.2
2,179,297	-		Sama_1786	0.63	-0.1
2,179,297	-		Sama_1786	0.63	-0.3
2,179,297	-		Sama_1786	0.63	-0.0
2,179,299	+		Sama_1786	0.63	-2.1
2,179,311	-		Sama_1786	0.63	+1.8
2,179,349	+		Sama_1786	0.65	+0.5
2,179,472	-		Sama_1786	0.70	+0.5
2,179,472	-		Sama_1786	0.70	-0.2
2,179,474	-		Sama_1786	0.70	+0.6
2,179,487	-		Sama_1786	0.71	-1.2
2,179,487	-		Sama_1786	0.71	+0.2
2,179,563	-		Sama_1786	0.74	-2.4
2,179,563	-		Sama_1786	0.74	+0.3
2,179,564	+		Sama_1786	0.74	-0.2
2,179,591	-		Sama_1786	0.75	-0.5
2,179,652	+		Sama_1786	0.78	-1.0
2,179,652	+		Sama_1786	0.78	-0.2
2,179,652	+		Sama_1786	0.78	+0.8
2,179,653	-		Sama_1786	0.78	+0.5
2,179,653	-		Sama_1786	0.78	+1.0
2,179,653	-		Sama_1786	0.78	+0.2
2,179,653	-		Sama_1786	0.78	-1.2
2,179,653	-		Sama_1786	0.78	-2.0
2,179,653	-		Sama_1786	0.78	-0.0
2,179,656	+		Sama_1786	0.78	+0.0
2,179,656	+		Sama_1786	0.78	+0.4
2,179,656	+		Sama_1786	0.78	+0.2
2,179,656	+		Sama_1786	0.78	-0.3
2,179,656	+		Sama_1786	0.78	+0.4
2,179,656	+		Sama_1786	0.78	-0.2
2,179,657	-		Sama_1786	0.78	-2.1
2,179,657	-		Sama_1786	0.78	+0.7
2,179,657	-		Sama_1786	0.78	+1.2
2,179,671	+		Sama_1786	0.79	-0.3
2,179,671	+		Sama_1786	0.79	+0.2
2,179,672	-		Sama_1786	0.79	+0.8
2,179,672	-		Sama_1786	0.79	-0.2
2,179,816	-		Sama_1786	0.85	+0.1
2,179,816	-		Sama_1786	0.85	+1.1
2,179,820	+		Sama_1786	0.85	+0.4
2,179,821	-		Sama_1786	0.85	-1.3
2,179,854	+		Sama_1786	0.86	+0.3
2,179,854	+		Sama_1786	0.86	+0.6
2,179,854	+		Sama_1786	0.86	+0.3
2,179,854	+		Sama_1786	0.86	-0.1
2,179,854	+		Sama_1786	0.86	-0.6
2,179,855	-		Sama_1786	0.86	+0.4
2,179,855	-		Sama_1786	0.86	+0.5
2,179,957	-				-0.3
2,179,990	+				-1.7
2,180,018	+				-0.2
2,180,045	+				-0.3
2,180,045	+				-0.3
2,180,045	+				+0.5
2,180,099	+				-1.1
2,180,099	+				+0.1
2,180,100	-				+0.2
2,180,100	-				+1.0
2,180,133	+				+0.1
2,180,183	+				+0.5
2,180,210	+				+0.3
2,180,215	-				-2.3
2,180,235	-				-0.2
2,180,285	-				+0.5
2,180,303	-				+0.1
2,180,320	+				-1.1
2,180,335	-				+2.7
2,180,335	-				-1.0
2,180,349	+				+0.0
2,180,390	+		Sama_1787	0.22	-1.1
2,180,391	-		Sama_1787	0.22	+0.1
2,180,391	-		Sama_1787	0.22	-0.9
2,180,405	+		Sama_1787	0.28	-0.8
2,180,405	+		Sama_1787	0.28	-0.8
2,180,457	-		Sama_1787	0.50	-1.3
2,180,568	+				-0.2
2,180,568	+				+0.6
2,180,568	+				-0.3
2,180,568	+				+0.9
2,180,569	-				+0.2
2,180,569	-				+1.0
2,180,578	+				-0.1
2,180,578	+				-2.7
2,180,578	+				-0.2
2,180,579	-				-1.9
2,180,579	-				-0.6
2,180,579	-				+0.4
2,180,579	-				+1.2
2,180,600	+				-1.7
2,180,601	-				+1.0
2,180,660	-				-0.5
2,180,660	-				-0.7
2,180,663	+				-0.3
2,180,665	+				+0.6
2,180,666	-				-0.5
2,180,666	-				-0.7
2,180,673	+				-0.3
2,180,686	-				-1.0
2,180,736	+				-0.3
2,180,788	+				+0.4
2,180,789	-				+1.1
2,180,807	+				+0.4
2,180,807	+				+0.3
2,180,808	-				-1.1
2,180,810	+				-1.7
2,180,831	+				-0.1
2,180,832	-				+0.1
2,180,834	-				-1.1
2,180,852	+				+0.8
2,180,853	-				+0.3
2,180,883	+				-0.8
2,180,990	+				-2.3
2,180,991	-				+0.4
2,180,995	-				-0.3
2,181,005	+				+0.4
2,181,028	-				+1.1
2,181,042	+				+0.6
2,181,085	+				+0.3
2,181,155	+				+0.1