Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_1632

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	L-Lysine (N)
				remove
1,996,448	+	Sama_1631	0.35	-1.9
1,996,521	-	Sama_1631	0.40	-1.2
1,996,560	+	Sama_1631	0.43	+0.4
1,996,560	+	Sama_1631	0.43	-0.8
1,996,560	+	Sama_1631	0.43	+0.7
1,996,689	-	Sama_1631	0.51	-1.0
1,996,758	+	Sama_1631	0.56	+0.5
1,996,773	-	Sama_1631	0.57	-0.7
1,996,799	+	Sama_1631	0.59	-1.6
1,996,806	+	Sama_1631	0.59	-1.1
1,996,935	+	Sama_1631	0.68	+0.2
1,996,935	+	Sama_1631	0.68	+0.2
1,996,935	+	Sama_1631	0.68	+1.1
1,996,935	+	Sama_1631	0.68	-0.2
1,997,045	+	Sama_1631	0.75	-0.4
1,997,045	+	Sama_1631	0.75	-0.5
1,997,045	+	Sama_1631	0.75	+0.7
1,997,177	+	Sama_1631	0.84	+0.6
1,997,178	-	Sama_1631	0.84	-0.4
1,997,244	+	Sama_1631	0.88	+0.5
1,997,244	+	Sama_1631	0.88	-0.2
1,997,245	-	Sama_1631	0.88	+0.1
1,997,245	-	Sama_1631	0.88	+1.8
1,997,245	-	Sama_1631	0.88	+0.4
1,997,294	+			+0.1
1,997,295	-			-0.1
1,997,415	+			-0.1
1,997,540	-			+0.4
1,997,540	-			-1.6
1,997,577	+			+1.1
1,997,666	+	Sama_1632	0.11	-0.7
1,997,667	-	Sama_1632	0.12	-1.2
1,997,673	-	Sama_1632	0.12	-0.0
1,997,752	+	Sama_1632	0.16	-0.3
1,997,768	-	Sama_1632	0.17	+0.0
1,997,809	+	Sama_1632	0.19	-1.3
1,997,810	-	Sama_1632	0.19	-1.2
1,997,810	-	Sama_1632	0.19	+1.2
1,997,816	+	Sama_1632	0.19	+0.3
1,997,817	-	Sama_1632	0.19	+0.9
1,997,817	-	Sama_1632	0.19	-0.4
1,997,817	-	Sama_1632	0.19	-0.0
1,997,856	-	Sama_1632	0.21	+0.2
1,997,873	+	Sama_1632	0.22	+0.2
1,997,873	+	Sama_1632	0.22	+0.1
1,997,878	-	Sama_1632	0.22	-1.7
1,997,878	-	Sama_1632	0.22	-0.9
1,997,878	-	Sama_1632	0.22	+0.2
1,997,912	+	Sama_1632	0.24	+1.5
1,997,996	+	Sama_1632	0.28	-0.8
1,998,073	+	Sama_1632	0.32	+0.7
1,998,073	+	Sama_1632	0.32	-1.3
1,998,073	+	Sama_1632	0.32	+0.9
1,998,074	-	Sama_1632	0.32	-0.2
1,998,077	+	Sama_1632	0.32	-0.2
1,998,077	+	Sama_1632	0.32	+0.5
1,998,077	+	Sama_1632	0.32	+3.2
1,998,077	+	Sama_1632	0.32	+0.6
1,998,077	+	Sama_1632	0.32	+1.4
1,998,077	+	Sama_1632	0.32	+0.4
1,998,078	-	Sama_1632	0.32	-1.1
1,998,078	-	Sama_1632	0.32	-0.8
1,998,078	-	Sama_1632	0.32	+1.5
1,998,078	-	Sama_1632	0.32	-1.1
1,998,096	+	Sama_1632	0.33	+0.0
1,998,096	+	Sama_1632	0.33	-1.8
1,998,097	-	Sama_1632	0.33	+0.4
1,998,110	-	Sama_1632	0.34	-0.7
1,998,164	-	Sama_1632	0.36	-0.1
1,998,241	+	Sama_1632	0.40	+0.6
1,998,241	+	Sama_1632	0.40	+0.0
1,998,241	+	Sama_1632	0.40	+0.4
1,998,241	+	Sama_1632	0.40	-0.3
1,998,241	+	Sama_1632	0.40	-0.0
1,998,242	-	Sama_1632	0.40	-0.3
1,998,245	-	Sama_1632	0.40	+0.9
1,998,408	+	Sama_1632	0.48	+0.4
1,998,433	+	Sama_1632	0.50	-0.7
1,998,433	+	Sama_1632	0.50	+1.6
1,998,433	+	Sama_1632	0.50	+1.2
1,998,434	-	Sama_1632	0.50	-0.2
1,998,506	-	Sama_1632	0.53	+0.6
1,998,512	+	Sama_1632	0.54	-0.5
1,998,513	-	Sama_1632	0.54	+1.5
1,998,513	-	Sama_1632	0.54	-0.3
1,998,557	-	Sama_1632	0.56	+0.7
1,998,684	+	Sama_1632	0.62	+0.8
1,998,684	+	Sama_1632	0.62	+0.1
1,998,714	-	Sama_1632	0.64	-0.5
1,998,714	-	Sama_1632	0.64	+0.5
1,998,723	-	Sama_1632	0.64	+0.5
1,998,723	-	Sama_1632	0.64	+0.6
1,998,733	+	Sama_1632	0.64	+0.5
1,998,745	+	Sama_1632	0.65	-0.5
1,998,745	+	Sama_1632	0.65	+1.2
1,998,746	-	Sama_1632	0.65	+0.2
1,998,746	-	Sama_1632	0.65	+0.8
1,998,746	-	Sama_1632	0.65	+1.4
1,998,797	-	Sama_1632	0.68	+0.5
1,998,853	+	Sama_1632	0.70	+0.8
1,998,901	+	Sama_1632	0.73	-0.8
1,998,962	+	Sama_1632	0.76	+0.1
1,999,106	+	Sama_1632	0.83	+1.2
1,999,106	+	Sama_1632	0.83	-1.3
1,999,106	+	Sama_1632	0.83	+0.2
1,999,106	+	Sama_1632	0.83	-0.6
1,999,106	+	Sama_1632	0.83	+1.1
1,999,107	-	Sama_1632	0.83	-2.8
1,999,107	-	Sama_1632	0.83	+1.1
1,999,107	-	Sama_1632	0.83	+0.0
1,999,107	-	Sama_1632	0.83	+1.0
1,999,107	-	Sama_1632	0.83	+0.9
1,999,107	-	Sama_1632	0.83	+0.6
1,999,133	-	Sama_1632	0.84	+0.5
1,999,144	+	Sama_1632	0.85	+0.5
1,999,144	+	Sama_1632	0.85	-0.3
1,999,144	+	Sama_1632	0.85	+0.2
1,999,207	-	Sama_1632	0.88	+1.4
1,999,221	+	Sama_1632	0.89	+0.7
1,999,222	-	Sama_1632	0.89	-1.8
1,999,279	+			-0.5
1,999,280	-			-0.2
1,999,390	+			+0.2
1,999,390	+			+0.3
1,999,391	-			+2.7
1,999,445	+			+0.7
1,999,445	+			+1.2
1,999,445	+			-0.0
1,999,463	+			+0.5
1,999,531	-			+0.5
1,999,543	+			-0.4
1,999,543	+			+0.1
1,999,544	-			+0.4
1,999,544	-			+0.1
1,999,544	-			+0.6
1,999,544	-			+0.3
1,999,546	+			-0.2
1,999,547	-			+0.9
1,999,610	+			-1.3
1,999,611	-			-2.3
1,999,615	-			+0.3
1,999,615	-			+0.6
1,999,681	-			-0.2
1,999,688	+			-0.2
1,999,689	-			+0.6
1,999,689	-			+0.1
1,999,689	-			-0.2
1,999,702	+			+0.3
1,999,702	+			-2.0
1,999,702	+			-0.4
1,999,703	-			-0.2
1,999,703	-			-0.3
1,999,711	-			-0.0
1,999,711	-			-0.2
1,999,711	-			+0.6
1,999,711	-			+0.4
1,999,720	+			+0.2
1,999,720	+			-0.9
1,999,721	-			-1.3
1,999,721	-			+0.7
1,999,721	-			-0.3
1,999,747	-			+0.1
1,999,747	-			+0.7
1,999,770	+			-0.2
1,999,770	+			+1.3
1,999,770	+			-1.6
1,999,770	+			+1.1
1,999,771	-			-1.2
1,999,771	-			-0.3
1,999,771	-			-0.0
1,999,773	-			-1.5
1,999,773	-			-1.0
1,999,773	-			-2.0
1,999,773	-			+2.1
1,999,831	-			+0.1
1,999,844	+			-0.2
1,999,845	-			+1.0
1,999,845	-			+0.2
1,999,918	+			+0.6
1,999,919	-	Sama_1633	0.10	-1.0
1,999,924	-	Sama_1633	0.11	-0.4
1,999,925	+	Sama_1633	0.11	-0.1
2,000,082	-	Sama_1633	0.28	+0.0
2,000,093	+	Sama_1633	0.29	-0.5
2,000,160	+	Sama_1633	0.36	-0.4
2,000,161	-	Sama_1633	0.37	+0.1
2,000,161	-	Sama_1633	0.37	-0.9
2,000,166	-	Sama_1633	0.37	-0.2
2,000,200	+	Sama_1633	0.41	-1.0
2,000,200	+	Sama_1633	0.41	-0.9
2,000,200	+	Sama_1633	0.41	-0.2
2,000,350	+	Sama_1633	0.57	-0.6
2,000,350	+	Sama_1633	0.57	+0.2
2,000,355	+	Sama_1633	0.58	+0.8
2,000,406	+	Sama_1633	0.63	+0.1
2,000,406	+	Sama_1633	0.63	-0.5

Or see this region's nucleotide sequence