Strain Fitness in Shewanella amazonensis SB2B around Sama_1542

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
1,877,795	+		Sama_1541	0.33	-1.9
1,877,972	-		Sama_1541	0.46	-2.2
1,878,024	+		Sama_1541	0.50	-1.6
1,878,187	+		Sama_1541	0.62	-0.9
1,878,188	-		Sama_1541	0.62	-2.3
1,878,206	+		Sama_1541	0.64	-1.4
1,878,207	-		Sama_1541	0.64	-2.0
1,878,211	+		Sama_1541	0.64	-3.7
1,878,256	+		Sama_1541	0.67	+1.5
1,878,257	-		Sama_1541	0.67	-3.0
1,878,257	-		Sama_1541	0.67	-0.3
1,878,257	-		Sama_1541	0.67	-1.8
1,878,289	+		Sama_1541	0.70	-1.8
1,878,289	+		Sama_1541	0.70	-2.6
1,878,289	+		Sama_1541	0.70	-1.9
1,878,289	+		Sama_1541	0.70	-1.8
1,878,290	-		Sama_1541	0.70	-1.2
1,878,290	-		Sama_1541	0.70	-0.5
1,878,290	-		Sama_1541	0.70	-0.6
1,878,290	-		Sama_1541	0.70	-3.1
1,878,290	-		Sama_1541	0.70	-1.1
1,878,290	-		Sama_1541	0.70	-3.5
1,878,290	-		Sama_1541	0.70	-0.0
1,878,290	-		Sama_1541	0.70	-2.1
1,878,295	+		Sama_1541	0.70	-2.4
1,878,295	+		Sama_1541	0.70	-2.3
1,878,295	+		Sama_1541	0.70	-2.0
1,878,295	+		Sama_1541	0.70	+0.4
1,878,295	+		Sama_1541	0.70	-0.6
1,878,295	+		Sama_1541	0.70	-0.2
1,878,296	-		Sama_1541	0.70	-3.2
1,878,296	-		Sama_1541	0.70	-1.6
1,878,296	-		Sama_1541	0.70	-1.7
1,878,296	-		Sama_1541	0.70	-2.7
1,878,296	-		Sama_1541	0.70	-1.8
1,878,296	-		Sama_1541	0.70	+0.5
1,878,296	-		Sama_1541	0.70	-2.0
1,878,296	-		Sama_1541	0.70	+0.2
1,878,299	-		Sama_1541	0.70	-0.4
1,878,315	+		Sama_1541	0.72	-2.2
1,878,325	+		Sama_1541	0.72	-1.2
1,878,326	-		Sama_1541	0.72	-3.0
1,878,326	-		Sama_1541	0.72	-1.6
1,878,326	-		Sama_1541	0.72	+1.0
1,878,326	-		Sama_1541	0.72	-0.6
1,878,326	-		Sama_1541	0.72	+1.3
1,878,348	+		Sama_1541	0.74	-2.2
1,878,349	-		Sama_1541	0.74	-2.6
1,878,349	-		Sama_1541	0.74	-1.5
1,878,349	-		Sama_1541	0.74	-1.4
1,878,371	+		Sama_1541	0.76	-0.6
1,878,444	+		Sama_1541	0.81	-2.8
1,878,444	+		Sama_1541	0.81	-2.8
1,878,444	+		Sama_1541	0.81	+0.5
1,878,444	+		Sama_1541	0.81	+1.3
1,878,445	-		Sama_1541	0.81	-3.0
1,878,445	-		Sama_1541	0.81	-1.0
1,878,449	-		Sama_1541	0.82	-2.6
1,878,566	+				-1.2
1,878,567	-				-1.6
1,878,567	-				+0.3
1,878,567	-				-1.7
1,878,568	+				-3.4
1,878,569	-				-1.2
1,878,569	-				-1.2
1,878,626	+				+1.5
1,878,627	-				-0.0
1,878,627	-				-1.4
1,878,629	+				-0.5
1,878,629	+				-1.1
1,878,629	+				-1.8
1,878,630	-				-1.6
1,878,630	-				+0.2
1,878,650	-				-2.1
1,878,686	+				-2.9
1,878,686	+				+0.3
1,878,703	+				-3.2
1,878,721	+				-0.1
1,878,829	+		Sama_1542	0.19	-2.2
1,878,830	-		Sama_1542	0.20	+1.1
1,878,838	-		Sama_1542	0.21	-0.7
1,878,910	-		Sama_1542	0.31	+0.1
1,879,081	-		Sama_1542	0.57	-3.2
1,879,081	-		Sama_1542	0.57	-1.3
1,879,144	+		Sama_1542	0.66	-1.5
1,879,145	-		Sama_1542	0.66	-1.6
1,879,186	+		Sama_1542	0.72	-1.2
1,879,186	+		Sama_1542	0.72	+0.2
1,879,187	-		Sama_1542	0.72	-1.9
1,879,187	-		Sama_1542	0.72	-2.8
1,879,193	+		Sama_1542	0.73	-3.4
1,879,193	+		Sama_1542	0.73	-3.4
1,879,193	+		Sama_1542	0.73	-3.7
1,879,194	-		Sama_1542	0.73	-2.3
1,879,261	-		Sama_1542	0.83	-0.5
1,879,341	-				+0.1
1,879,341	-				-2.7
1,879,341	-				-0.1
1,879,376	+				-1.3
1,879,377	-				-1.0
1,879,425	-				-0.1
1,879,433	+				+0.2
1,879,443	+				-0.2
1,879,443	+				-0.9
1,879,444	-				-0.3
1,879,453	-				+0.2
1,879,506	+				-1.1
1,879,506	+				-2.3
1,879,507	-				-0.3
1,879,507	-				+0.5
1,879,511	+				+0.8
1,879,512	-				+0.1
1,879,546	+				+0.2
1,879,546	+				-0.7
1,879,546	+				-0.3
1,879,565	+				-1.3
1,879,565	+				+1.2
1,879,569	+				-0.9
1,879,587	+				+0.6
1,879,587	+				+0.0
1,879,588	-				-0.0
1,879,619	-				-1.7
1,879,619	-				-0.6
1,879,624	+				-0.3
1,879,625	-				-0.1
1,879,685	+		Sama_1543	0.16	+1.4
1,879,718	+		Sama_1543	0.20	+0.0
1,879,718	+		Sama_1543	0.20	-1.1
1,879,718	+		Sama_1543	0.20	+0.9
1,879,719	-		Sama_1543	0.20	+0.1
1,879,719	-		Sama_1543	0.20	+0.7
1,879,719	-		Sama_1543	0.20	+0.5
1,879,736	+		Sama_1543	0.22	+0.9
1,879,877	+		Sama_1543	0.39	-1.0
1,879,877	+		Sama_1543	0.39	+0.0
1,879,940	+		Sama_1543	0.46	+1.1
1,879,940	+		Sama_1543	0.46	-0.0
1,879,940	+		Sama_1543	0.46	+0.8
1,879,948	+		Sama_1543	0.47	+0.3
1,879,948	+		Sama_1543	0.47	-2.5
1,879,949	-		Sama_1543	0.47	+0.7
1,880,009	-		Sama_1543	0.54	-0.0
1,880,071	+		Sama_1543	0.61	-0.8
1,880,071	+		Sama_1543	0.61	+0.8
1,880,097	+		Sama_1543	0.64	-0.6
1,880,097	+		Sama_1543	0.64	+0.5
1,880,097	+		Sama_1543	0.64	+0.3
1,880,098	-		Sama_1543	0.64	-0.4
1,880,098	-		Sama_1543	0.64	+0.2
1,880,098	-		Sama_1543	0.64	+0.4
1,880,098	-		Sama_1543	0.64	-0.5
1,880,100	-		Sama_1543	0.65	-1.5
1,880,120	+		Sama_1543	0.67	-0.1
1,880,120	+		Sama_1543	0.67	-2.0
1,880,122	+		Sama_1543	0.67	+0.4
1,880,122	+		Sama_1543	0.67	-1.0
1,880,122	+		Sama_1543	0.67	-0.3
1,880,123	-		Sama_1543	0.67	-0.7
1,880,123	-		Sama_1543	0.67	+0.6
1,880,142	+		Sama_1543	0.70	-0.7
1,880,142	+		Sama_1543	0.70	+0.4