Strain Fitness in Shewanella amazonensis SB2B around Sama_1513

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
1,837,811	+		Sama_1512	0.71	+0.7
1,837,812	-		Sama_1512	0.71	-0.7
1,837,846	+		Sama_1512	0.72	+0.7
1,837,846	+		Sama_1512	0.72	+1.2
1,837,846	+		Sama_1512	0.72	-0.2
1,837,846	+		Sama_1512	0.72	+0.4
1,837,847	-		Sama_1512	0.72	+1.1
1,837,847	-		Sama_1512	0.72	-0.3
1,837,847	-		Sama_1512	0.72	-1.1
1,837,847	-		Sama_1512	0.72	+0.0
1,837,847	-		Sama_1512	0.72	-1.2
1,837,850	+		Sama_1512	0.72	+0.2
1,837,851	-		Sama_1512	0.73	-0.6
1,837,851	-		Sama_1512	0.73	-0.8
1,837,851	-		Sama_1512	0.73	-0.5
1,837,851	-		Sama_1512	0.73	-0.6
1,837,851	-		Sama_1512	0.73	-0.1
1,837,949	-		Sama_1512	0.77	-0.9
1,837,958	+		Sama_1512	0.77	-0.1
1,837,959	-		Sama_1512	0.77	+0.8
1,837,959	-		Sama_1512	0.77	-0.1
1,838,029	+		Sama_1512	0.80	+0.4
1,838,029	+		Sama_1512	0.80	-0.0
1,838,046	-		Sama_1512	0.81	+0.8
1,838,107	+		Sama_1512	0.83	-0.7
1,838,108	-		Sama_1512	0.83	+0.4
1,838,108	-		Sama_1512	0.83	-0.4
1,838,149	+		Sama_1512	0.85	+0.1
1,838,149	+		Sama_1512	0.85	+0.9
1,838,149	+		Sama_1512	0.85	-0.8
1,838,150	-		Sama_1512	0.85	+0.0
1,838,150	-		Sama_1512	0.85	+0.8
1,838,165	+		Sama_1512	0.86	-0.7
1,838,165	+		Sama_1512	0.86	-0.7
1,838,217	+		Sama_1512	0.88	-0.8
1,838,217	+		Sama_1512	0.88	-0.1
1,838,218	-		Sama_1512	0.88	-0.5
1,838,218	-		Sama_1512	0.88	+0.8
1,838,218	-		Sama_1512	0.88	-0.2
1,838,218	-		Sama_1512	0.88	-0.1
1,838,218	-		Sama_1512	0.88	+0.3
1,838,218	-		Sama_1512	0.88	-0.1
1,838,238	+		Sama_1512	0.89	+0.6
1,838,238	+		Sama_1512	0.89	-2.0
1,838,238	+		Sama_1512	0.89	-0.4
1,838,239	-		Sama_1512	0.89	-0.1
1,838,239	-		Sama_1512	0.89	-0.2
1,838,239	-		Sama_1512	0.89	-0.4
1,838,239	-		Sama_1512	0.89	+0.0
1,838,239	-		Sama_1512	0.89	-1.5
1,838,239	-		Sama_1512	0.89	+0.7
1,838,240	+		Sama_1512	0.89	-0.1
1,838,240	+		Sama_1512	0.89	+0.0
1,838,240	+		Sama_1512	0.89	+0.5
1,838,240	+		Sama_1512	0.89	-0.1
1,838,240	+		Sama_1512	0.89	-0.5
1,838,240	+		Sama_1512	0.89	+0.9
1,838,240	+		Sama_1512	0.89	-1.1
1,838,240	+		Sama_1512	0.89	+0.5
1,838,240	+		Sama_1512	0.89	+0.8
1,838,240	+		Sama_1512	0.89	+0.4
1,838,240	+		Sama_1512	0.89	+0.4
1,838,241	-		Sama_1512	0.89	-1.2
1,838,241	-		Sama_1512	0.89	-2.2
1,838,241	-		Sama_1512	0.89	-0.2
1,838,241	-		Sama_1512	0.89	-1.4
1,838,241	-		Sama_1512	0.89	-0.7
1,838,304	+				+0.4
1,838,305	-				-0.5
1,838,305	-				+0.1
1,838,384	+				+0.2
1,838,384	+				+1.5
1,838,384	+				+1.0
1,838,384	+				+0.3
1,838,384	+				+0.4
1,838,384	+				-0.9
1,838,384	+				-0.4
1,838,385	-				-0.8
1,838,385	-				+0.4
1,838,385	-				-1.6
1,838,385	-				-1.9
1,838,386	+				-0.8
1,838,387	-				+0.4
1,838,387	-				-0.6
1,838,387	-				-0.8
1,838,430	-				+0.1
1,838,482	+				-0.5
1,838,482	+				+0.1
1,838,537	+				+0.7
1,838,537	+				+0.4
1,838,537	+				-0.6
1,838,542	-				+0.1
1,838,542	-				+0.9
1,838,586	+				-0.2
1,838,631	+				-1.0
1,838,722	+		Sama_1513	0.12	-1.1
1,838,819	-		Sama_1513	0.24	-1.4
1,838,848	-		Sama_1513	0.27	-3.1
1,838,857	-		Sama_1513	0.29	-1.8
1,838,942	+		Sama_1513	0.39	-0.2
1,838,943	-		Sama_1513	0.39	-0.7
1,838,943	-		Sama_1513	0.39	-1.9
1,838,943	-		Sama_1513	0.39	-1.2
1,838,970	+		Sama_1513	0.43	-1.9
1,839,041	-		Sama_1513	0.52	-1.8
1,839,042	+		Sama_1513	0.52	-3.1
1,839,042	+		Sama_1513	0.52	-3.2
1,839,042	+		Sama_1513	0.52	-1.1
1,839,042	+		Sama_1513	0.52	-0.8
1,839,042	+		Sama_1513	0.52	-2.0
1,839,043	-		Sama_1513	0.52	-1.2
1,839,043	-		Sama_1513	0.52	-1.2
1,839,043	-		Sama_1513	0.52	+0.3
1,839,043	-		Sama_1513	0.52	-0.4
1,839,072	-		Sama_1513	0.56	-1.1
1,839,072	-		Sama_1513	0.56	-1.7
1,839,158	+		Sama_1513	0.66	-0.7
1,839,201	+		Sama_1513	0.72	-1.1
1,839,226	-		Sama_1513	0.75	+1.1
1,839,226	-		Sama_1513	0.75	-0.4
1,839,304	+		Sama_1513	0.85	-3.3
1,839,316	+		Sama_1513	0.86	-1.9
1,839,337	+		Sama_1513	0.89	-1.4
1,839,338	-		Sama_1513	0.89	-1.2
1,839,355	+				-1.9
1,839,360	+				-1.5
1,839,360	+				-2.5
1,839,360	+				-0.2
1,839,365	-				-0.5
1,839,401	-				+0.4
1,839,401	-				-0.1
1,839,425	-				-0.2
1,839,425	-				-2.4
1,839,425	-				-2.1
1,839,510	-				-0.0
1,839,524	+				-0.8
1,839,524	+				-0.7
1,839,531	-				-1.4
1,839,570	+				+0.2
1,839,571	-				+0.1
1,839,571	-				+0.3
1,839,588	-				-1.1
1,839,736	-				+0.1
1,839,807	+				+0.2
1,839,807	+				-0.7
1,839,807	+				+0.6
1,839,807	+				+0.3
1,839,808	-				-0.1
1,839,826	+				-0.1
1,840,001	+				-1.0
1,840,002	-				+0.2
1,840,039	-				-0.2
1,840,039	-				-0.7
1,840,111	+		Sama_1514	0.11	+0.1
1,840,139	+		Sama_1514	0.12	+0.6
1,840,225	+		Sama_1514	0.15	+0.9
1,840,226	-		Sama_1514	0.15	+1.0
1,840,236	-		Sama_1514	0.15	-1.0
1,840,237	+		Sama_1514	0.15	-0.9
1,840,237	+		Sama_1514	0.15	-1.4
1,840,238	-		Sama_1514	0.15	+0.8
1,840,238	-		Sama_1514	0.15	+1.4
1,840,238	-		Sama_1514	0.15	+1.2
1,840,379	+		Sama_1514	0.19	-0.2
1,840,380	-		Sama_1514	0.19	-1.5
1,840,396	+		Sama_1514	0.20	+0.6
1,840,396	+		Sama_1514	0.20	+1.0
1,840,396	+		Sama_1514	0.20	-0.6
1,840,397	-		Sama_1514	0.20	+0.5