Strain Fitness in Shewanella amazonensis SB2B around Sama_1507

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
1,829,603	+		Sama_1506	0.69	-0.2
1,829,612	+		Sama_1506	0.69	-2.6
1,829,635	+		Sama_1506	0.70	+1.2
1,829,635	+		Sama_1506	0.70	-3.2
1,829,635	+		Sama_1506	0.70	+1.8
1,829,635	+		Sama_1506	0.70	+0.0
1,829,635	+		Sama_1506	0.70	+0.5
1,829,635	+		Sama_1506	0.70	-0.5
1,829,635	+		Sama_1506	0.70	+1.1
1,829,635	+		Sama_1506	0.70	+0.1
1,829,636	-		Sama_1506	0.70	-0.3
1,829,636	-		Sama_1506	0.70	-1.5
1,829,636	-		Sama_1506	0.70	+0.4
1,829,636	-		Sama_1506	0.70	+0.3
1,829,663	-		Sama_1506	0.71	-1.1
1,829,669	+		Sama_1506	0.72	-1.5
1,829,690	-		Sama_1506	0.73	-0.2
1,829,812	+		Sama_1506	0.78	+1.0
1,829,812	+		Sama_1506	0.78	-1.4
1,829,812	+		Sama_1506	0.78	+0.3
1,829,813	-		Sama_1506	0.78	-0.2
1,829,841	-		Sama_1506	0.79	+0.3
1,829,841	-		Sama_1506	0.79	+0.1
1,829,841	-		Sama_1506	0.79	+0.4
1,829,841	-		Sama_1506	0.79	+0.8
1,829,843	+		Sama_1506	0.79	-0.6
1,829,843	+		Sama_1506	0.79	-1.8
1,829,844	-		Sama_1506	0.79	+0.6
1,829,844	-		Sama_1506	0.79	+0.9
1,829,849	+		Sama_1506	0.80	+0.0
1,829,849	+		Sama_1506	0.80	+0.1
1,829,849	+		Sama_1506	0.80	-2.8
1,829,850	-		Sama_1506	0.80	+0.5
1,829,906	+		Sama_1506	0.82	-0.1
1,829,906	+		Sama_1506	0.82	+0.8
1,829,946	+		Sama_1506	0.84	+0.7
1,829,946	+		Sama_1506	0.84	-0.2
1,829,946	+		Sama_1506	0.84	-0.2
1,829,947	-		Sama_1506	0.84	-0.3
1,829,947	-		Sama_1506	0.84	-0.3
1,829,947	-		Sama_1506	0.84	-0.0
1,829,947	-		Sama_1506	0.84	+0.1
1,830,001	+		Sama_1506	0.86	+0.2
1,830,001	+		Sama_1506	0.86	+0.0
1,830,001	+		Sama_1506	0.86	-0.5
1,830,001	+		Sama_1506	0.86	+0.2
1,830,002	-		Sama_1506	0.86	+0.7
1,830,002	-		Sama_1506	0.86	-0.6
1,830,002	-		Sama_1506	0.86	-0.1
1,830,002	-		Sama_1506	0.86	+0.4
1,830,002	-		Sama_1506	0.86	+0.6
1,830,100	-				+0.4
1,830,208	+				+1.0
1,830,208	+				-0.3
1,830,208	+				+0.3
1,830,209	-				-0.0
1,830,209	-				+0.4
1,830,212	+				-0.1
1,830,212	+				-1.2
1,830,212	+				+0.0
1,830,212	+				-0.3
1,830,213	-				-0.9
1,830,213	-				-1.1
1,830,255	+				+0.1
1,830,255	+				-1.1
1,830,256	-				-0.9
1,830,283	+				+0.2
1,830,283	+				+1.7
1,830,283	+				-0.6
1,830,283	+				-1.4
1,830,284	-				-1.1
1,830,284	-				+0.2
1,830,284	-				-0.3
1,830,340	-				-0.5
1,830,370	+				+0.1
1,830,371	-				-1.4
1,830,391	-				-0.2
1,830,407	-				-1.0
1,830,418	+				-0.4
1,830,418	+				-1.1
1,830,418	+				-0.5
1,830,418	+				+0.4
1,830,418	+				+0.9
1,830,419	-				-0.2
1,830,420	+				-0.9
1,830,420	+				-0.5
1,830,421	-				-0.1
1,830,496	+				+0.2
1,830,496	+				-1.1
1,830,496	+				-0.3
1,830,497	-				-1.7
1,830,497	-				-0.1
1,830,516	+				+0.7
1,830,588	-				-0.6
1,830,596	+				-0.7
1,830,596	+				-0.5
1,830,601	+				-0.6
1,830,601	+				+0.0
1,830,601	+				+0.1
1,830,601	+				-0.2
1,830,601	+				+0.5
1,830,602	-				+0.0
1,830,602	-				-0.5
1,830,602	-				+0.1
1,830,602	-				+0.2
1,830,604	-				+0.5
1,830,605	+				+0.1
1,830,605	+				-0.8
1,830,605	+				-0.2
1,830,605	+				-1.5
1,830,605	+				+0.2
1,830,606	-				+1.4
1,830,606	-				-0.6
1,830,669	+		Sama_1507	0.13	+0.0
1,830,670	-		Sama_1507	0.13	-2.1
1,830,670	-		Sama_1507	0.13	+0.4
1,830,670	-		Sama_1507	0.13	+0.8
1,830,702	-		Sama_1507	0.18	+0.8
1,830,770	-		Sama_1507	0.28	-1.2
1,830,945	+		Sama_1507	0.55	-1.6
1,830,945	+		Sama_1507	0.55	-0.2
1,830,945	+		Sama_1507	0.55	-0.8
1,830,945	+		Sama_1507	0.55	+1.2
1,830,945	+		Sama_1507	0.55	-0.1
1,830,945	+		Sama_1507	0.55	+0.2
1,830,946	-		Sama_1507	0.55	-0.8
1,830,946	-		Sama_1507	0.55	+0.4
1,831,014	+		Sama_1507	0.65	-0.6
1,831,014	+		Sama_1507	0.65	+0.6
1,831,137	+		Sama_1507	0.84	+0.0
1,831,137	+		Sama_1507	0.84	-0.7
1,831,137	+		Sama_1507	0.84	-0.5
1,831,138	-		Sama_1507	0.84	-0.4
1,831,138	-		Sama_1507	0.84	+0.2
1,831,159	+		Sama_1507	0.87	+0.0
1,831,160	-		Sama_1507	0.87	+0.7
1,831,162	-		Sama_1507	0.87	-0.5
1,831,241	+				+0.4
1,831,241	+				-1.0
1,831,242	-				+0.8
1,831,256	+				+0.5
1,831,257	-				-1.0
1,831,257	-				-1.9
1,831,311	-				+0.9
1,831,328	+				-1.0
1,831,328	+				+1.4
1,831,328	+				+0.3
1,831,328	+				-0.6
1,831,328	+				+0.2
1,831,329	-				+0.2
1,831,329	-				+0.1
1,831,329	-				+1.6
1,831,333	+				-0.2
1,831,333	+				-0.6
1,831,333	+				-1.2
1,831,333	+				+0.8
1,831,334	-				+1.6
1,831,334	-				+1.0
1,831,346	+				-1.2
1,831,347	-				+0.6
1,831,388	-				-1.0
1,831,401	-				-3.1
1,831,401	-				-3.7
1,831,441	-				-4.6
1,831,724	-		Sama_1508	0.39	-3.4
1,831,724	-		Sama_1508	0.39	-2.6
1,831,750	-		Sama_1508	0.42	-2.0
1,831,752	-		Sama_1508	0.42	-1.0
1,831,752	-		Sama_1508	0.42	-4.7
1,831,774	-		Sama_1508	0.44	-2.6
1,832,058	-		Sama_1508	0.74	-1.8
1,832,058	-		Sama_1508	0.74	-3.9
1,832,079	-		Sama_1508	0.76	-4.6
1,832,079	-		Sama_1508	0.76	-3.2
1,832,079	-		Sama_1508	0.76	-3.1
1,832,110	-		Sama_1508	0.79	-2.8
1,832,110	-		Sama_1508	0.79	-4.3
1,832,110	-		Sama_1508	0.79	-3.8
1,832,110	-		Sama_1508	0.79	-3.6
1,832,192	-		Sama_1508	0.87	-1.2
1,832,192	-		Sama_1508	0.87	-4.4