Strain Fitness in Shewanella amazonensis SB2B around Sama_1208

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
1,481,223	+		Sama_1207	0.31	-0.4
1,481,223	+		Sama_1207	0.31	+0.3
1,481,224	-		Sama_1207	0.31	+0.0
1,481,224	-		Sama_1207	0.31	+0.9
1,481,450	+		Sama_1207	0.54	+0.0
1,481,451	-		Sama_1207	0.54	-0.8
1,481,451	-		Sama_1207	0.54	-1.2
1,481,515	+		Sama_1207	0.60	-1.1
1,481,515	+		Sama_1207	0.60	+0.0
1,481,515	+		Sama_1207	0.60	+0.1
1,481,516	-		Sama_1207	0.61	-0.3
1,481,516	-		Sama_1207	0.61	-0.1
1,481,516	-		Sama_1207	0.61	-0.4
1,481,516	-		Sama_1207	0.61	-0.2
1,481,516	-		Sama_1207	0.61	-0.0
1,481,516	-		Sama_1207	0.61	+1.0
1,481,516	-		Sama_1207	0.61	-0.6
1,481,516	-		Sama_1207	0.61	+1.1
1,481,516	-		Sama_1207	0.61	-1.4
1,481,516	-		Sama_1207	0.61	-0.2
1,481,581	+		Sama_1207	0.67	-1.4
1,481,889	-				-0.1
1,481,889	-				-0.7
1,481,972	+				+0.8
1,481,972	+				-0.2
1,482,059	+				-1.7
1,482,059	+				+0.1
1,482,059	+				+0.3
1,482,059	+				+0.9
1,482,060	-				-0.4
1,482,060	-				-0.5
1,482,060	-				-0.3
1,482,130	-				+0.0
1,482,155	+				-2.1
1,482,156	-				-2.0
1,482,156	-				+0.7
1,482,160	-				+0.3
1,482,160	-				-0.9
1,482,308	+		Sama_1208	0.17	-1.2
1,482,308	+		Sama_1208	0.17	-0.1
1,482,308	+		Sama_1208	0.17	-0.7
1,482,308	+		Sama_1208	0.17	-0.6
1,482,308	+		Sama_1208	0.17	+0.8
1,482,308	+		Sama_1208	0.17	+0.3
1,482,308	+		Sama_1208	0.17	-0.5
1,482,308	+		Sama_1208	0.17	+0.0
1,482,309	-		Sama_1208	0.17	+0.5
1,482,309	-		Sama_1208	0.17	-0.5
1,482,309	-		Sama_1208	0.17	-0.6
1,482,309	-		Sama_1208	0.17	-1.1
1,482,309	-		Sama_1208	0.17	-1.5
1,482,309	-		Sama_1208	0.17	+0.3
1,482,309	-		Sama_1208	0.17	-0.3
1,482,312	+		Sama_1208	0.17	-0.8
1,482,312	+		Sama_1208	0.17	+0.4
1,482,313	-		Sama_1208	0.17	+0.4
1,482,313	-		Sama_1208	0.17	-1.4
1,482,313	-		Sama_1208	0.17	+1.9
1,482,313	-		Sama_1208	0.17	-0.0
1,482,313	-		Sama_1208	0.17	+0.7
1,482,313	-		Sama_1208	0.17	+0.1
1,482,363	+		Sama_1208	0.20	+0.8
1,482,364	-		Sama_1208	0.20	+1.0
1,482,413	+		Sama_1208	0.22	-1.6
1,482,414	-		Sama_1208	0.22	-1.7
1,482,513	+		Sama_1208	0.27	-0.1
1,482,513	+		Sama_1208	0.27	-0.2
1,482,546	+		Sama_1208	0.29	+0.3
1,482,612	+		Sama_1208	0.33	+0.4
1,482,655	+		Sama_1208	0.35	+0.4
1,482,655	+		Sama_1208	0.35	+0.4
1,482,655	+		Sama_1208	0.35	+0.3
1,482,655	+		Sama_1208	0.35	-1.6
1,482,656	-		Sama_1208	0.35	+0.6
1,482,656	-		Sama_1208	0.35	-0.8
1,482,656	-		Sama_1208	0.35	-1.2
1,482,662	+		Sama_1208	0.35	-0.5
1,482,662	+		Sama_1208	0.35	+0.1
1,482,662	+		Sama_1208	0.35	-0.9
1,482,662	+		Sama_1208	0.35	-1.3
1,482,662	+		Sama_1208	0.35	+0.3
1,482,662	+		Sama_1208	0.35	-0.2
1,482,663	-		Sama_1208	0.35	-0.1
1,482,663	-		Sama_1208	0.35	-0.3
1,482,663	-		Sama_1208	0.35	-0.8
1,482,663	-		Sama_1208	0.35	-1.3
1,482,663	-		Sama_1208	0.35	+0.1
1,482,664	+		Sama_1208	0.35	-2.2
1,482,665	-		Sama_1208	0.35	-1.2
1,482,784	-		Sama_1208	0.41	+1.1
1,482,810	+		Sama_1208	0.43	+1.0
1,482,844	+		Sama_1208	0.44	-2.3
1,482,845	-		Sama_1208	0.44	-1.0
1,482,845	-		Sama_1208	0.44	-1.2
1,482,845	-		Sama_1208	0.44	-1.0
1,482,891	+		Sama_1208	0.47	-0.3
1,482,892	-		Sama_1208	0.47	+1.4
1,482,892	-		Sama_1208	0.47	-0.3
1,483,007	-		Sama_1208	0.53	-0.4
1,483,191	+		Sama_1208	0.62	-0.4
1,483,192	-		Sama_1208	0.62	-0.9
1,483,299	+		Sama_1208	0.67	-0.1
1,483,299	+		Sama_1208	0.67	+0.5
1,483,300	-		Sama_1208	0.67	+0.8
1,483,300	-		Sama_1208	0.67	+0.2
1,483,330	+		Sama_1208	0.69	-1.9
1,483,330	+		Sama_1208	0.69	-1.3
1,483,350	+		Sama_1208	0.70	+0.3
1,483,382	+		Sama_1208	0.72	-0.6
1,483,382	+		Sama_1208	0.72	-0.7
1,483,411	-		Sama_1208	0.73	-1.0
1,483,469	+		Sama_1208	0.76	+0.4
1,483,469	+		Sama_1208	0.76	-0.2
1,483,469	+		Sama_1208	0.76	-0.8
1,483,469	+		Sama_1208	0.76	-0.3
1,483,470	-		Sama_1208	0.76	-0.4
1,483,470	-		Sama_1208	0.76	+0.5
1,483,473	+		Sama_1208	0.76	+0.7
1,483,474	-		Sama_1208	0.76	-1.6
1,483,474	-		Sama_1208	0.76	+0.7
1,483,509	-		Sama_1208	0.78	-0.7
1,483,509	-		Sama_1208	0.78	-0.6
1,483,509	-		Sama_1208	0.78	-0.7
1,483,551	-		Sama_1208	0.80	-1.3
1,483,556	+		Sama_1208	0.80	-0.7
1,483,556	+		Sama_1208	0.80	+0.5
1,483,557	-		Sama_1208	0.80	+0.1
1,483,576	+		Sama_1208	0.81	+0.2
1,483,577	-		Sama_1208	0.81	+0.8
1,483,632	-		Sama_1208	0.84	-3.2
1,483,632	-		Sama_1208	0.84	-0.1
1,483,650	+		Sama_1208	0.85	-0.6
1,483,691	+		Sama_1208	0.87	-0.3
1,483,839	+				-2.0
1,483,903	+				-0.2
1,483,904	-				-0.7
1,483,955	+				-1.6
1,483,955	+				-0.5
1,483,955	+				-0.6
1,483,955	+				+0.7
1,483,956	-				+0.8
1,483,956	-				+0.1
1,484,021	+				+0.8
1,484,021	+				+0.2
1,484,022	-				+0.6
1,484,060	-				-0.2
1,484,067	-				+0.6
1,484,149	+				+0.2
1,484,150	-				-0.3
1,484,150	-				+0.5
1,484,225	+				-2.3
1,484,225	+				+0.6
1,484,225	+				-0.7
1,484,225	+				-0.4
1,484,226	-				-0.4
1,484,226	-				-2.9
1,484,226	-				+0.1
1,484,247	+				+0.6
1,484,247	+				-0.8
1,484,248	-				-0.9
1,484,248	-				+0.2
1,484,253	+				-1.5
1,484,260	+				-0.3
1,484,260	+				-1.6
1,484,280	+				-0.2
1,484,280	+				+0.4
1,484,280	+				+0.8
1,484,281	-				-0.7
1,484,281	-				+0.6
1,484,281	-				+0.6
1,484,281	-				+0.8
1,484,281	-				-0.2
1,484,281	-				+0.4
1,484,281	-				+1.2
1,484,281	-				+0.4
1,484,304	-				+0.3
1,484,348	+				-0.6
1,484,404	+				-0.1
1,484,404	+				+0.2
1,484,404	+				-0.1
1,484,404	+				-0.4
1,484,404	+				-0.5
1,484,404	+				-0.6
1,484,404	+				-0.2
1,484,405	-				-0.3
1,484,405	-				-0.2
1,484,405	-				+0.2
1,484,405	-				+0.5
1,484,405	-				+0.4
1,484,490	+		Sama_1209	0.11	+0.3
1,484,491	-		Sama_1209	0.11	-0.1
1,484,517	-		Sama_1209	0.12	+1.1
1,484,520	-		Sama_1209	0.12	+0.5
1,484,520	-		Sama_1209	0.12	-1.3
1,484,559	+		Sama_1209	0.14	-0.4
1,484,559	+		Sama_1209	0.14	-2.1
1,484,564	+		Sama_1209	0.14	+0.5
1,484,565	-		Sama_1209	0.14	-1.6
1,484,565	-		Sama_1209	0.14	-0.1
1,484,565	-		Sama_1209	0.14	-0.3
1,484,588	+		Sama_1209	0.15	-0.3
1,484,588	+		Sama_1209	0.15	+1.7
1,484,588	+		Sama_1209	0.15	+0.8
1,484,588	+		Sama_1209	0.15	+0.1
1,484,588	+		Sama_1209	0.15	-0.6
1,484,588	+		Sama_1209	0.15	-0.0
1,484,588	+		Sama_1209	0.15	+0.6
1,484,588	+		Sama_1209	0.15	+0.3
1,484,588	+		Sama_1209	0.15	+0.2
1,484,588	+		Sama_1209	0.15	+0.1
1,484,588	+		Sama_1209	0.15	+0.2
1,484,588	+		Sama_1209	0.15	-0.7
1,484,588	+		Sama_1209	0.15	-0.4
1,484,589	-		Sama_1209	0.15	-0.2
1,484,589	-		Sama_1209	0.15	+0.9
1,484,589	-		Sama_1209	0.15	-1.4
1,484,589	-		Sama_1209	0.15	+0.0
1,484,589	-		Sama_1209	0.15	+0.2
1,484,589	-		Sama_1209	0.15	+0.1
1,484,589	-		Sama_1209	0.15	+0.3
1,484,589	-		Sama_1209	0.15	+0.2
1,484,589	-		Sama_1209	0.15	+1.5
1,484,589	-		Sama_1209	0.15	+0.4
1,484,593	+		Sama_1209	0.15	-1.1
1,484,719	+		Sama_1209	0.21	+0.5
1,484,719	+		Sama_1209	0.21	-0.8
1,484,719	+		Sama_1209	0.21	+1.6
1,484,720	-		Sama_1209	0.21	-0.0
1,484,725	+		Sama_1209	0.21	+0.6
1,484,725	+		Sama_1209	0.21	+0.1
1,484,726	-		Sama_1209	0.21	-0.2
1,484,726	-		Sama_1209	0.21	-0.8
1,484,726	-		Sama_1209	0.21	-0.4