Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1516

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1514 and Dshi_1515 are separated by 3 nucleotidesDshi_1515 and Dshi_1516 are separated by 60 nucleotidesDshi_1516 and Dshi_1517 are separated by 109 nucleotides Dshi_1514: Dshi_1514 - thiamine monophosphate synthase (RefSeq), at 1,576,962 to 1,577,585 _1514 Dshi_1515: Dshi_1515 - Phosphoribosyl-AMP cyclohydrolase (RefSeq), at 1,577,589 to 1,577,948 _1515 Dshi_1516: Dshi_1516 - nitrogen-fixing NifU domain protein (RefSeq), at 1,578,009 to 1,578,458 _1516 Dshi_1517: Dshi_1517 - inner-membrane translocator (RefSeq), at 1,578,568 to 1,579,872 _1517 Position (kb) 1578 1579Strain fitness (log2 ratio) -1 0 1at 1577.130 kb on - strand, within Dshi_1514at 1577.270 kb on + strand, within Dshi_1514at 1577.328 kb on + strand, within Dshi_1514at 1577.328 kb on + strand, within Dshi_1514at 1577.485 kb on + strand, within Dshi_1514at 1577.533 kb on - strandat 1577.587 kb on + strandat 1578.024 kb on - strandat 1578.714 kb on - strand, within Dshi_1517at 1578.758 kb on - strand, within Dshi_1517at 1578.806 kb on + strand, within Dshi_1517at 1578.848 kb on + strand, within Dshi_1517at 1579.114 kb on + strand, within Dshi_1517at 1579.457 kb on + strand, within Dshi_1517

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,577,130 - Dshi_1514 0.27 -0.9
1,577,270 + Dshi_1514 0.49 -1.0
1,577,328 + Dshi_1514 0.59 -0.6
1,577,328 + Dshi_1514 0.59 -1.2
1,577,485 + Dshi_1514 0.84 -0.3
1,577,533 - -0.2
1,577,587 + -0.1
1,578,024 - +0.1
1,578,714 - Dshi_1517 0.11 -0.5
1,578,758 - Dshi_1517 0.15 -0.2
1,578,806 + Dshi_1517 0.18 -1.2
1,578,848 + Dshi_1517 0.21 +0.2
1,579,114 + Dshi_1517 0.42 -0.2
1,579,457 + Dshi_1517 0.68 +0.3

Or see this region's nucleotide sequence