Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1113

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1111 and Dshi_1112 are separated by 66 nucleotidesDshi_1112 and Dshi_1113 are separated by 20 nucleotidesDshi_1113 and Dshi_1114 overlap by 4 nucleotides Dshi_1111: Dshi_1111 - Tol-Pal system beta propeller repeat TolB (RefSeq), at 1,135,659 to 1,136,999 _1111 Dshi_1112: Dshi_1112 - Peptidoglycan-associated lipoprotein (RefSeq), at 1,137,066 to 1,137,593 _1112 Dshi_1113: Dshi_1113 - Tol-Pal system YbgF (RefSeq), at 1,137,614 to 1,138,432 _1113 Dshi_1114: Dshi_1114 - tRNA(Ile)-lysidine synthetase (RefSeq), at 1,138,429 to 1,139,682 _1114 Position (kb) 1137 1138 1139Strain fitness (log2 ratio) -2 -1 0 1at 1136.993 kb on + strandat 1137.001 kb on - strandat 1137.004 kb on + strandat 1137.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,136,993 + +0.3
1,137,001 - -0.5
1,137,004 + -1.9
1,137,610 - -0.5

Or see this region's nucleotide sequence