Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0776

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0775 and Dshi_0776 are separated by 278 nucleotidesDshi_0776 and Dshi_0777 overlap by 16 nucleotides Dshi_0775: Dshi_0775 - tartrate dehydrogenase (RefSeq), at 780,036 to 781,115 _0775 Dshi_0776: Dshi_0776 - cobalamin B12-binding domain protein (RefSeq), at 781,394 to 782,179 _0776 Dshi_0777: Dshi_0777 - threonyl-tRNA synthetase (RefSeq), at 782,164 to 784,128 _0777 Position (kb) 781 782 783Strain fitness (log2 ratio) -2 -1 0 1at 780.401 kb on - strand, within Dshi_0775at 780.418 kb on - strand, within Dshi_0775at 780.459 kb on - strand, within Dshi_0775at 780.510 kb on - strand, within Dshi_0775at 780.638 kb on + strand, within Dshi_0775at 780.638 kb on - strand, within Dshi_0775at 780.745 kb on + strand, within Dshi_0775at 780.781 kb on - strand, within Dshi_0775at 780.794 kb on + strand, within Dshi_0775at 780.938 kb on + strand, within Dshi_0775at 780.943 kb on + strand, within Dshi_0775at 780.946 kb on - strand, within Dshi_0775at 781.007 kb on + strand, within Dshi_0775at 781.026 kb on + strandat 781.081 kb on - strandat 781.395 kb on + strandat 781.569 kb on + strand, within Dshi_0776at 781.645 kb on - strand, within Dshi_0776at 781.709 kb on + strand, within Dshi_0776at 782.003 kb on - strand, within Dshi_0776at 782.113 kb on - strandat 782.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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780,401 - Dshi_0775 0.34 +0.5
780,418 - Dshi_0775 0.35 -2.6
780,459 - Dshi_0775 0.39 -0.3
780,510 - Dshi_0775 0.44 -0.0
780,638 + Dshi_0775 0.56 -0.7
780,638 - Dshi_0775 0.56 -0.2
780,745 + Dshi_0775 0.66 +0.2
780,781 - Dshi_0775 0.69 +0.4
780,794 + Dshi_0775 0.70 -1.4
780,938 + Dshi_0775 0.84 -1.1
780,943 + Dshi_0775 0.84 +1.5
780,946 - Dshi_0775 0.84 -0.7
781,007 + Dshi_0775 0.90 +0.9
781,026 + -0.3
781,081 - -2.7
781,395 + -1.1
781,569 + Dshi_0776 0.22 +0.1
781,645 - Dshi_0776 0.32 -1.2
781,709 + Dshi_0776 0.40 -0.6
782,003 - Dshi_0776 0.77 -0.4
782,113 - -1.2
782,190 + +1.2

Or see this region's nucleotide sequence