Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0563

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0562 and Dshi_0563 are separated by 634 nucleotidesDshi_0563 and Dshi_0564 are separated by 103 nucleotides Dshi_0562: Dshi_0562 - transport system permease protein (RefSeq), at 548,885 to 549,931 _0562 Dshi_0563: Dshi_0563 - lipoprotein, putative (RefSeq), at 550,566 to 551,828 _0563 Dshi_0564: Dshi_0564 - protein of unknown function DUF1111 (RefSeq), at 551,932 to 553,464 _0564 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1 2at 549.583 kb on + strand, within Dshi_0562at 549.583 kb on + strand, within Dshi_0562at 549.591 kb on - strand, within Dshi_0562at 549.591 kb on - strand, within Dshi_0562at 549.622 kb on - strand, within Dshi_0562at 549.622 kb on - strand, within Dshi_0562at 549.682 kb on + strand, within Dshi_0562at 549.851 kb on + strandat 549.894 kb on - strandat 549.894 kb on - strandat 549.995 kb on + strandat 550.017 kb on + strandat 550.017 kb on + strandat 550.017 kb on + strandat 550.022 kb on + strandat 550.024 kb on + strandat 550.025 kb on - strandat 550.025 kb on - strandat 550.040 kb on - strandat 550.051 kb on - strandat 550.051 kb on - strandat 550.066 kb on + strandat 550.074 kb on - strandat 550.074 kb on - strandat 550.074 kb on - strandat 550.074 kb on - strandat 550.074 kb on - strandat 550.074 kb on - strandat 550.120 kb on + strandat 550.120 kb on + strandat 550.130 kb on + strandat 550.133 kb on - strandat 550.133 kb on - strandat 550.138 kb on - strandat 550.172 kb on + strandat 550.281 kb on - strandat 550.283 kb on + strandat 550.336 kb on - strandat 550.398 kb on + strandat 550.398 kb on + strandat 550.422 kb on - strandat 550.430 kb on + strandat 550.501 kb on + strandat 550.509 kb on - strandat 550.522 kb on - strandat 550.558 kb on - strandat 550.558 kb on - strandat 550.560 kb on + strandat 550.562 kb on - strandat 550.568 kb on - strandat 550.576 kb on + strandat 550.591 kb on - strandat 550.591 kb on - strandat 550.643 kb on + strandat 550.643 kb on + strandat 550.644 kb on + strandat 550.668 kb on + strandat 550.697 kb on - strand, within Dshi_0563at 550.707 kb on - strand, within Dshi_0563at 550.755 kb on + strand, within Dshi_0563at 550.755 kb on + strand, within Dshi_0563at 550.763 kb on - strand, within Dshi_0563at 550.774 kb on + strand, within Dshi_0563at 550.780 kb on + strand, within Dshi_0563at 550.798 kb on + strand, within Dshi_0563at 550.798 kb on + strand, within Dshi_0563at 550.816 kb on - strand, within Dshi_0563at 550.883 kb on + strand, within Dshi_0563at 550.945 kb on + strand, within Dshi_0563at 550.979 kb on + strand, within Dshi_0563at 550.991 kb on + strand, within Dshi_0563at 550.991 kb on + strand, within Dshi_0563at 551.014 kb on - strand, within Dshi_0563at 551.059 kb on - strand, within Dshi_0563at 551.109 kb on + strand, within Dshi_0563at 551.133 kb on - strand, within Dshi_0563at 551.144 kb on + strand, within Dshi_0563at 551.144 kb on + strand, within Dshi_0563at 551.144 kb on + strand, within Dshi_0563at 551.152 kb on - strand, within Dshi_0563at 551.252 kb on + strand, within Dshi_0563at 551.254 kb on - strand, within Dshi_0563at 551.288 kb on + strand, within Dshi_0563at 551.320 kb on - strand, within Dshi_0563at 551.320 kb on - strand, within Dshi_0563at 551.365 kb on + strand, within Dshi_0563at 551.384 kb on + strand, within Dshi_0563at 551.397 kb on - strand, within Dshi_0563at 551.412 kb on - strand, within Dshi_0563at 551.472 kb on - strand, within Dshi_0563at 551.501 kb on - strand, within Dshi_0563at 551.519 kb on + strand, within Dshi_0563at 551.527 kb on - strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.629 kb on - strand, within Dshi_0563at 551.629 kb on - strand, within Dshi_0563at 551.655 kb on + strand, within Dshi_0563at 551.691 kb on + strand, within Dshi_0563at 551.699 kb on - strand, within Dshi_0563at 551.699 kb on - strand, within Dshi_0563at 551.699 kb on - strand, within Dshi_0563at 551.728 kb on + strandat 551.747 kb on + strandat 551.797 kb on - strandat 551.825 kb on - strandat 551.879 kb on - strandat 551.889 kb on - strandat 551.906 kb on + strandat 551.940 kb on - strandat 551.943 kb on + strandat 551.958 kb on + strandat 552.005 kb on + strandat 552.047 kb on - strandat 552.047 kb on - strandat 552.047 kb on - strandat 552.170 kb on + strand, within Dshi_0564at 552.227 kb on + strand, within Dshi_0564at 552.247 kb on - strand, within Dshi_0564at 552.253 kb on - strand, within Dshi_0564at 552.266 kb on + strand, within Dshi_0564at 552.266 kb on + strand, within Dshi_0564at 552.349 kb on - strand, within Dshi_0564at 552.349 kb on - strand, within Dshi_0564at 552.364 kb on + strand, within Dshi_0564at 552.438 kb on - strand, within Dshi_0564at 552.476 kb on + strand, within Dshi_0564at 552.499 kb on + strand, within Dshi_0564at 552.499 kb on + strand, within Dshi_0564at 552.499 kb on + strand, within Dshi_0564at 552.507 kb on - strand, within Dshi_0564at 552.514 kb on + strand, within Dshi_0564at 552.532 kb on - strand, within Dshi_0564at 552.534 kb on + strand, within Dshi_0564at 552.534 kb on + strand, within Dshi_0564at 552.542 kb on - strand, within Dshi_0564at 552.547 kb on - strand, within Dshi_0564at 552.577 kb on - strand, within Dshi_0564at 552.577 kb on - strand, within Dshi_0564at 552.594 kb on + strand, within Dshi_0564at 552.594 kb on + strand, within Dshi_0564at 552.712 kb on + strand, within Dshi_0564at 552.712 kb on + strand, within Dshi_0564at 552.736 kb on + strand, within Dshi_0564at 552.765 kb on + strand, within Dshi_0564at 552.796 kb on - strand, within Dshi_0564at 552.796 kb on - strand, within Dshi_0564at 552.798 kb on + strand, within Dshi_0564at 552.806 kb on - strand, within Dshi_0564at 552.806 kb on - strand, within Dshi_0564

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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549,583 + Dshi_0562 0.67 +1.0
549,583 + Dshi_0562 0.67 +1.6
549,591 - Dshi_0562 0.67 -0.2
549,591 - Dshi_0562 0.67 -0.8
549,622 - Dshi_0562 0.70 +0.5
549,622 - Dshi_0562 0.70 +0.4
549,682 + Dshi_0562 0.76 -1.1
549,851 + +2.2
549,894 - -0.9
549,894 - -2.1
549,995 + -2.6
550,017 + -0.5
550,017 + +0.2
550,017 + -0.4
550,022 + +1.4
550,024 + -0.8
550,025 - +0.8
550,025 - -0.4
550,040 - +0.0
550,051 - -1.8
550,051 - +0.9
550,066 + -0.2
550,074 - -1.4
550,074 - -2.0
550,074 - -0.5
550,074 - +0.1
550,074 - +0.4
550,074 - -0.7
550,120 + +1.1
550,120 + -0.5
550,130 + -1.0
550,133 - -0.8
550,133 - -0.1
550,138 - -1.6
550,172 + +1.1
550,281 - +0.8
550,283 + -1.9
550,336 - -0.5
550,398 + -0.8
550,398 + -0.2
550,422 - -0.1
550,430 + +1.6
550,501 + +0.5
550,509 - -0.1
550,522 - -1.3
550,558 - +0.2
550,558 - -0.7
550,560 + -0.8
550,562 - +0.0
550,568 - +0.3
550,576 + -0.7
550,591 - +1.2
550,591 - +1.9
550,643 + -2.6
550,643 + +1.0
550,644 + -0.3
550,668 + +0.4
550,697 - Dshi_0563 0.10 -0.6
550,707 - Dshi_0563 0.11 -0.5
550,755 + Dshi_0563 0.15 -0.4
550,755 + Dshi_0563 0.15 +0.1
550,763 - Dshi_0563 0.16 -1.5
550,774 + Dshi_0563 0.16 -2.2
550,780 + Dshi_0563 0.17 +0.1
550,798 + Dshi_0563 0.18 +0.3
550,798 + Dshi_0563 0.18 +0.4
550,816 - Dshi_0563 0.20 +0.9
550,883 + Dshi_0563 0.25 -1.6
550,945 + Dshi_0563 0.30 +0.5
550,979 + Dshi_0563 0.33 -0.7
550,991 + Dshi_0563 0.34 +0.6
550,991 + Dshi_0563 0.34 +0.6
551,014 - Dshi_0563 0.35 -0.4
551,059 - Dshi_0563 0.39 +0.0
551,109 + Dshi_0563 0.43 -0.3
551,133 - Dshi_0563 0.45 +0.3
551,144 + Dshi_0563 0.46 -1.1
551,144 + Dshi_0563 0.46 -0.4
551,144 + Dshi_0563 0.46 -0.1
551,152 - Dshi_0563 0.46 +0.1
551,252 + Dshi_0563 0.54 -1.9
551,254 - Dshi_0563 0.54 +0.9
551,288 + Dshi_0563 0.57 -0.0
551,320 - Dshi_0563 0.60 +0.7
551,320 - Dshi_0563 0.60 +0.7
551,365 + Dshi_0563 0.63 +0.4
551,384 + Dshi_0563 0.65 +0.4
551,397 - Dshi_0563 0.66 -1.6
551,412 - Dshi_0563 0.67 +1.2
551,472 - Dshi_0563 0.72 -0.8
551,501 - Dshi_0563 0.74 +0.4
551,519 + Dshi_0563 0.75 +0.4
551,527 - Dshi_0563 0.76 -0.4
551,621 + Dshi_0563 0.84 +0.4
551,621 + Dshi_0563 0.84 +0.0
551,621 + Dshi_0563 0.84 -0.8
551,621 + Dshi_0563 0.84 +0.1
551,621 + Dshi_0563 0.84 +1.2
551,621 + Dshi_0563 0.84 -0.3
551,621 + Dshi_0563 0.84 -0.2
551,629 - Dshi_0563 0.84 +0.5
551,629 - Dshi_0563 0.84 -0.2
551,655 + Dshi_0563 0.86 +0.7
551,691 + Dshi_0563 0.89 +0.6
551,699 - Dshi_0563 0.90 +0.3
551,699 - Dshi_0563 0.90 +1.0
551,699 - Dshi_0563 0.90 -0.0
551,728 + -0.8
551,747 + -1.1
551,797 - +0.3
551,825 - +1.0
551,879 - +0.2
551,889 - +0.1
551,906 + -0.2
551,940 - +0.4
551,943 + -2.2
551,958 + -0.4
552,005 + +0.0
552,047 - +1.0
552,047 - -0.6
552,047 - -1.7
552,170 + Dshi_0564 0.16 -0.7
552,227 + Dshi_0564 0.19 -1.0
552,247 - Dshi_0564 0.21 -0.0
552,253 - Dshi_0564 0.21 +0.3
552,266 + Dshi_0564 0.22 -0.0
552,266 + Dshi_0564 0.22 +0.2
552,349 - Dshi_0564 0.27 -0.3
552,349 - Dshi_0564 0.27 +0.2
552,364 + Dshi_0564 0.28 +0.2
552,438 - Dshi_0564 0.33 +0.7
552,476 + Dshi_0564 0.35 -0.1
552,499 + Dshi_0564 0.37 -0.2
552,499 + Dshi_0564 0.37 -0.2
552,499 + Dshi_0564 0.37 -0.3
552,507 - Dshi_0564 0.38 -0.1
552,514 + Dshi_0564 0.38 -1.6
552,532 - Dshi_0564 0.39 -0.0
552,534 + Dshi_0564 0.39 -0.8
552,534 + Dshi_0564 0.39 +0.1
552,542 - Dshi_0564 0.40 -1.0
552,547 - Dshi_0564 0.40 +0.1
552,577 - Dshi_0564 0.42 -0.2
552,577 - Dshi_0564 0.42 -0.0
552,594 + Dshi_0564 0.43 +0.4
552,594 + Dshi_0564 0.43 +0.1
552,712 + Dshi_0564 0.51 -0.7
552,712 + Dshi_0564 0.51 -2.1
552,736 + Dshi_0564 0.52 -0.2
552,765 + Dshi_0564 0.54 -0.3
552,796 - Dshi_0564 0.56 -0.3
552,796 - Dshi_0564 0.56 +1.4
552,798 + Dshi_0564 0.56 +1.5
552,806 - Dshi_0564 0.57 -0.6
552,806 - Dshi_0564 0.57 +0.3

Or see this region's nucleotide sequence