Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0339 and Dshi_0340 are separated by 117 nucleotides Dshi_0340 and Dshi_0341 are separated by 11 nucleotides Dshi_0341 and Dshi_0342 are separated by 260 nucleotides Dshi_0342 and Dshi_0343 are separated by 90 nucleotides
Dshi_0339: Dshi_0339 - protein of unknown function DUF849 (RefSeq), at 327,660 to 328,538
_0339
Dshi_0340: Dshi_0340 - ribosomal protein L31 (RefSeq), at 328,656 to 328,877
_0340
Dshi_0341: Dshi_0341 - ribosomal protein L19 (RefSeq), at 328,889 to 329,263
_0341
Dshi_0342: Dshi_0342 - tRNA (guanine-N1)-methyltransferase (RefSeq), at 329,524 to 330,321
_0342
Dshi_0343: Dshi_0343 - aminoglycoside phosphotransferase (RefSeq), at 330,412 to 331,401
_0343
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1 at 328.636 kb on - strand at 329.530 kb on - strand at 330.227 kb on + strand, within Dshi_0342 at 330.437 kb on + strand at 330.526 kb on - strand, within Dshi_0343 at 330.537 kb on + strand, within Dshi_0343 at 330.577 kb on + strand, within Dshi_0343 at 330.609 kb on + strand, within Dshi_0343 at 330.728 kb on - strand, within Dshi_0343 at 330.743 kb on - strand, within Dshi_0343 at 330.764 kb on + strand, within Dshi_0343 at 330.808 kb on + strand, within Dshi_0343 at 330.871 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.112 kb on - strand, within Dshi_0343 at 331.211 kb on - strand, within Dshi_0343 at 331.294 kb on + strand, within Dshi_0343 at 331.294 kb on + strand, within Dshi_0343 at 331.302 kb on - strand, within Dshi_0343
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 328,636 - -1.9 329,530 - +0.1 330,227 + Dshi_0342 0.88 -1.9 330,437 + +0.2 330,526 - Dshi_0343 0.12 +0.3 330,537 + Dshi_0343 0.13 -2.0 330,577 + Dshi_0343 0.17 -0.2 330,609 + Dshi_0343 0.20 +1.6 330,728 - Dshi_0343 0.32 +0.7 330,743 - Dshi_0343 0.33 +0.3 330,764 + Dshi_0343 0.36 -0.1 330,808 + Dshi_0343 0.40 +0.2 330,871 + Dshi_0343 0.46 -0.1 331,104 + Dshi_0343 0.70 +0.7 331,104 + Dshi_0343 0.70 +0.5 331,104 + Dshi_0343 0.70 -0.1 331,112 - Dshi_0343 0.71 -1.0 331,211 - Dshi_0343 0.81 -0.6 331,294 + Dshi_0343 0.89 -0.3 331,294 + Dshi_0343 0.89 -0.3 331,302 - Dshi_0343 0.90 +0.1
Or see this region's nucleotide sequence