Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0058

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0057 and Dshi_0058 are separated by 81 nucleotidesDshi_0058 and Dshi_0059 are separated by 40 nucleotides Dshi_0057: Dshi_0057 - leucyl-tRNA synthetase (RefSeq), at 53,250 to 55,859 _0057 Dshi_0058: Dshi_0058 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 55,941 to 56,645 _0058 Dshi_0059: Dshi_0059 - cell divisionFtsK/SpoIIIE (RefSeq), at 56,686 to 59,673 _0059 Position (kb) 55 56 57Strain fitness (log2 ratio) -1 0 1at 55.919 kb on + strandat 55.927 kb on - strandat 55.927 kb on - strandat 56.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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55,919 + -0.1
55,927 - +0.4
55,927 - +0.4
56,600 - -1.6

Or see this region's nucleotide sequence