Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09520

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c09510 and PGA1_c09520 are separated by 15 nucleotidesPGA1_c09520 and PGA1_c09530 overlap by 4 nucleotides PGA1_c09510: PGA1_c09510 - putative peptidoglycan synthetase, at 973,853 to 975,640 _c09510 PGA1_c09520: PGA1_c09520 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE, at 975,656 to 977,140 _c09520 PGA1_c09530: PGA1_c09530 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF, at 977,137 to 978,549 _c09530 Position (kb) 975 976 977 978Strain fitness (log2 ratio) -1 0 1at 975.617 kb on + strandat 975.625 kb on - strandat 975.625 kb on - strandat 975.626 kb on - strandat 975.639 kb on + strandat 975.653 kb on + strandat 975.653 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
975,617 + -1.7
975,625 - -1.1
975,625 - -1.5
975,626 - -0.0
975,639 + -0.5
975,653 + -0.8
975,653 + -0.5

Or see this region's nucleotide sequence