Experiment: m.b. pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3973 and HP15_3974 overlap by 14 nucleotides HP15_3974 and HP15_3975 overlap by 4 nucleotides HP15_3975 and HP15_3976 are separated by 87 nucleotides
HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427
_3973
HP15_3974: HP15_3974 - short chain dehydrogenase, at 4,204,414 to 4,205,196
_3974
HP15_3975: HP15_3975 - conserved hypothetical protein, secreted, at 4,205,193 to 4,205,813
_3975
HP15_3976: HP15_3976 - protein containing diguanylate cyclase, predicted domains, at 4,205,901 to 4,207,421
_3976
Position (kb) 4205
4206 Strain fitness (log2 ratio) -1
0
1
2 at 4204.222 kb on - strand at 4204.378 kb on + strand at 4204.640 kb on + strand, within HP15_3974 at 4204.648 kb on - strand, within HP15_3974 at 4204.660 kb on - strand, within HP15_3974 at 4204.660 kb on - strand, within HP15_3974 at 4204.665 kb on - strand, within HP15_3974 at 4204.693 kb on + strand, within HP15_3974 at 4204.715 kb on - strand, within HP15_3974 at 4204.789 kb on + strand, within HP15_3974 at 4204.797 kb on - strand, within HP15_3974 at 4204.797 kb on - strand, within HP15_3974 at 4204.810 kb on + strand, within HP15_3974 at 4204.859 kb on + strand, within HP15_3974 at 4204.897 kb on + strand, within HP15_3974 at 4204.905 kb on - strand, within HP15_3974 at 4204.928 kb on + strand, within HP15_3974 at 4204.956 kb on - strand, within HP15_3974 at 4204.978 kb on + strand, within HP15_3974 at 4205.001 kb on - strand, within HP15_3974 at 4205.126 kb on - strand at 4205.185 kb on - strand at 4205.253 kb on + strand at 4205.331 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.465 kb on + strand, within HP15_3975 at 4205.465 kb on + strand, within HP15_3975 at 4205.549 kb on - strand, within HP15_3975 at 4205.690 kb on + strand, within HP15_3975 at 4205.696 kb on + strand, within HP15_3975 at 4205.704 kb on - strand, within HP15_3975 at 4205.787 kb on + strand at 4205.787 kb on + strand at 4205.846 kb on - strand at 4205.887 kb on + strand at 4206.119 kb on + strand, within HP15_3976 at 4206.211 kb on - strand, within HP15_3976 at 4206.211 kb on - strand, within HP15_3976 at 4206.232 kb on + strand, within HP15_3976 at 4206.252 kb on - strand, within HP15_3976 at 4206.271 kb on + strand, within HP15_3976 at 4206.272 kb on - strand, within HP15_3976 at 4206.279 kb on - strand, within HP15_3976 at 4206.427 kb on + strand, within HP15_3976 at 4206.512 kb on + strand, within HP15_3976 at 4206.512 kb on + strand, within HP15_3976 at 4206.553 kb on - strand, within HP15_3976 at 4206.553 kb on - strand, within HP15_3976 at 4206.569 kb on + strand, within HP15_3976 at 4206.577 kb on - strand, within HP15_3976 at 4206.577 kb on - strand, within HP15_3976 at 4206.638 kb on - strand, within HP15_3976 at 4206.654 kb on + strand, within HP15_3976 at 4206.762 kb on + strand, within HP15_3976
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH6.5 remove 4,204,222 - -0.1 4,204,378 + +0.8 4,204,640 + HP15_3974 0.29 +0.8 4,204,648 - HP15_3974 0.30 -0.5 4,204,660 - HP15_3974 0.31 +0.5 4,204,660 - HP15_3974 0.31 -0.3 4,204,665 - HP15_3974 0.32 +0.1 4,204,693 + HP15_3974 0.36 +0.4 4,204,715 - HP15_3974 0.38 +0.5 4,204,789 + HP15_3974 0.48 -0.0 4,204,797 - HP15_3974 0.49 +1.9 4,204,797 - HP15_3974 0.49 +0.3 4,204,810 + HP15_3974 0.51 -0.1 4,204,859 + HP15_3974 0.57 -1.5 4,204,897 + HP15_3974 0.62 +1.0 4,204,905 - HP15_3974 0.63 +0.5 4,204,928 + HP15_3974 0.66 -0.4 4,204,956 - HP15_3974 0.69 -0.4 4,204,978 + HP15_3974 0.72 -0.6 4,205,001 - HP15_3974 0.75 -0.6 4,205,126 - +0.4 4,205,185 - -0.1 4,205,253 + -0.4 4,205,331 + HP15_3975 0.22 +1.1 4,205,410 + HP15_3975 0.35 -0.7 4,205,410 + HP15_3975 0.35 -0.2 4,205,410 + HP15_3975 0.35 +0.1 4,205,410 + HP15_3975 0.35 +0.1 4,205,410 + HP15_3975 0.35 +0.0 4,205,410 + HP15_3975 0.35 -0.6 4,205,418 - HP15_3975 0.36 -0.1 4,205,418 - HP15_3975 0.36 -1.0 4,205,418 - HP15_3975 0.36 +0.7 4,205,465 + HP15_3975 0.44 +0.5 4,205,465 + HP15_3975 0.44 -0.1 4,205,549 - HP15_3975 0.57 +1.0 4,205,690 + HP15_3975 0.80 +0.2 4,205,696 + HP15_3975 0.81 +0.4 4,205,704 - HP15_3975 0.82 -0.2 4,205,787 + +0.1 4,205,787 + +0.0 4,205,846 - -0.2 4,205,887 + +0.5 4,206,119 + HP15_3976 0.14 +0.3 4,206,211 - HP15_3976 0.20 +0.9 4,206,211 - HP15_3976 0.20 +0.3 4,206,232 + HP15_3976 0.22 -0.4 4,206,252 - HP15_3976 0.23 +1.0 4,206,271 + HP15_3976 0.24 -0.3 4,206,272 - HP15_3976 0.24 -0.4 4,206,279 - HP15_3976 0.25 +0.3 4,206,427 + HP15_3976 0.35 +0.4 4,206,512 + HP15_3976 0.40 -0.6 4,206,512 + HP15_3976 0.40 -0.2 4,206,553 - HP15_3976 0.43 -1.1 4,206,553 - HP15_3976 0.43 +0.2 4,206,569 + HP15_3976 0.44 -0.0 4,206,577 - HP15_3976 0.44 -0.5 4,206,577 - HP15_3976 0.44 +0.1 4,206,638 - HP15_3976 0.48 +0.5 4,206,654 + HP15_3976 0.50 -0.2 4,206,762 + HP15_3976 0.57 -0.1
Or see this region's nucleotide sequence