Experiment: m.b. pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3302 and HP15_3303 are separated by 70 nucleotides HP15_3303 and HP15_3304 overlap by 17 nucleotides HP15_3304 and HP15_3305 overlap by 1 nucleotides
HP15_3302: HP15_3302 - sterol desaturase family protein, at 3,459,932 to 3,460,918
_3302
HP15_3303: HP15_3303 - lysophospholipase, at 3,460,989 to 3,461,846
_3303
HP15_3304: HP15_3304 - molybdenum ABC transporter, periplasmic binding protein, at 3,461,830 to 3,462,633
_3304
HP15_3305: HP15_3305 - molybdate ABC transporter, inner membrane subunit, at 3,462,633 to 3,463,313
_3305
Position (kb)
3460
3461
3462 Strain fitness (log2 ratio)
-1
0
1 at 3460.065 kb on + strand, within HP15_3302 at 3460.120 kb on + strand, within HP15_3302 at 3460.174 kb on + strand, within HP15_3302 at 3460.182 kb on - strand, within HP15_3302 at 3460.202 kb on + strand, within HP15_3302 at 3460.202 kb on + strand, within HP15_3302 at 3460.211 kb on - strand, within HP15_3302 at 3460.211 kb on - strand, within HP15_3302 at 3460.277 kb on + strand, within HP15_3302 at 3460.308 kb on + strand, within HP15_3302 at 3460.314 kb on + strand, within HP15_3302 at 3460.314 kb on + strand, within HP15_3302 at 3460.388 kb on - strand, within HP15_3302 at 3460.429 kb on - strand, within HP15_3302 at 3460.456 kb on + strand, within HP15_3302 at 3460.481 kb on + strand, within HP15_3302 at 3460.481 kb on + strand, within HP15_3302 at 3460.482 kb on + strand, within HP15_3302 at 3460.484 kb on - strand, within HP15_3302 at 3460.712 kb on - strand, within HP15_3302 at 3460.716 kb on - strand, within HP15_3302 at 3460.733 kb on - strand, within HP15_3302 at 3460.749 kb on - strand, within HP15_3302 at 3460.905 kb on - strand at 3461.121 kb on - strand, within HP15_3303 at 3461.185 kb on + strand, within HP15_3303 at 3461.235 kb on + strand, within HP15_3303 at 3461.238 kb on - strand, within HP15_3303 at 3461.240 kb on + strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.275 kb on + strand, within HP15_3303 at 3461.283 kb on - strand, within HP15_3303 at 3461.283 kb on - strand, within HP15_3303 at 3461.354 kb on + strand, within HP15_3303 at 3461.398 kb on + strand, within HP15_3303 at 3461.398 kb on + strand, within HP15_3303 at 3461.465 kb on + strand, within HP15_3303 at 3461.513 kb on - strand, within HP15_3303 at 3461.783 kb on + strand at 3461.783 kb on + strand at 3461.820 kb on + strand at 3461.950 kb on - strand, within HP15_3304 at 3461.975 kb on + strand, within HP15_3304 at 3462.037 kb on - strand, within HP15_3304 at 3462.095 kb on - strand, within HP15_3304 at 3462.105 kb on + strand, within HP15_3304 at 3462.110 kb on + strand, within HP15_3304 at 3462.113 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.135 kb on + strand, within HP15_3304 at 3462.142 kb on - strand, within HP15_3304 at 3462.154 kb on + strand, within HP15_3304 at 3462.184 kb on - strand, within HP15_3304 at 3462.227 kb on + strand, within HP15_3304 at 3462.245 kb on + strand, within HP15_3304 at 3462.280 kb on + strand, within HP15_3304 at 3462.367 kb on + strand, within HP15_3304 at 3462.458 kb on + strand, within HP15_3304 at 3462.466 kb on - strand, within HP15_3304 at 3462.480 kb on - strand, within HP15_3304 at 3462.516 kb on - strand, within HP15_3304 at 3462.675 kb on - strand at 3462.807 kb on + strand, within HP15_3305 at 3462.814 kb on + strand, within HP15_3305
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH6.5 remove 3,460,065 + HP15_3302 0.13 -0.3 3,460,120 + HP15_3302 0.19 +0.3 3,460,174 + HP15_3302 0.25 -0.2 3,460,182 - HP15_3302 0.25 -0.5 3,460,202 + HP15_3302 0.27 +0.2 3,460,202 + HP15_3302 0.27 +1.2 3,460,211 - HP15_3302 0.28 -0.6 3,460,211 - HP15_3302 0.28 +0.5 3,460,277 + HP15_3302 0.35 +0.3 3,460,308 + HP15_3302 0.38 -0.3 3,460,314 + HP15_3302 0.39 -0.8 3,460,314 + HP15_3302 0.39 +0.5 3,460,388 - HP15_3302 0.46 -0.0 3,460,429 - HP15_3302 0.50 +0.2 3,460,456 + HP15_3302 0.53 -0.0 3,460,481 + HP15_3302 0.56 +0.4 3,460,481 + HP15_3302 0.56 -0.6 3,460,482 + HP15_3302 0.56 +0.2 3,460,484 - HP15_3302 0.56 -0.3 3,460,712 - HP15_3302 0.79 -0.5 3,460,716 - HP15_3302 0.79 -0.1 3,460,733 - HP15_3302 0.81 +0.7 3,460,749 - HP15_3302 0.83 +0.8 3,460,905 - -0.4 3,461,121 - HP15_3303 0.15 -0.5 3,461,185 + HP15_3303 0.23 +0.1 3,461,235 + HP15_3303 0.29 +0.4 3,461,238 - HP15_3303 0.29 -1.1 3,461,240 + HP15_3303 0.29 -0.2 3,461,248 - HP15_3303 0.30 -0.4 3,461,248 - HP15_3303 0.30 -0.8 3,461,248 - HP15_3303 0.30 -0.3 3,461,275 + HP15_3303 0.33 -0.1 3,461,283 - HP15_3303 0.34 -0.1 3,461,283 - HP15_3303 0.34 +0.1 3,461,354 + HP15_3303 0.43 -0.8 3,461,398 + HP15_3303 0.48 -0.1 3,461,398 + HP15_3303 0.48 -0.2 3,461,465 + HP15_3303 0.55 +0.2 3,461,513 - HP15_3303 0.61 -0.8 3,461,783 + -0.0 3,461,783 + -0.1 3,461,820 + +1.4 3,461,950 - HP15_3304 0.15 -1.0 3,461,975 + HP15_3304 0.18 +0.0 3,462,037 - HP15_3304 0.26 -0.1 3,462,095 - HP15_3304 0.33 +0.0 3,462,105 + HP15_3304 0.34 -0.1 3,462,110 + HP15_3304 0.35 -0.6 3,462,113 - HP15_3304 0.35 -0.1 3,462,118 - HP15_3304 0.36 +0.8 3,462,118 - HP15_3304 0.36 -0.9 3,462,118 - HP15_3304 0.36 +0.1 3,462,118 - HP15_3304 0.36 -0.7 3,462,135 + HP15_3304 0.38 -0.5 3,462,142 - HP15_3304 0.39 -0.1 3,462,154 + HP15_3304 0.40 +0.1 3,462,184 - HP15_3304 0.44 -0.5 3,462,227 + HP15_3304 0.49 +0.3 3,462,245 + HP15_3304 0.52 -0.3 3,462,280 + HP15_3304 0.56 +0.0 3,462,367 + HP15_3304 0.67 +0.6 3,462,458 + HP15_3304 0.78 +0.2 3,462,466 - HP15_3304 0.79 +0.2 3,462,480 - HP15_3304 0.81 +0.4 3,462,516 - HP15_3304 0.85 +0.2 3,462,675 - +0.0 3,462,807 + HP15_3305 0.26 +0.1 3,462,814 + HP15_3305 0.27 +0.0
Or see this region's nucleotide sequence