Experiment: m.b. pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3157 and HP15_3158 are separated by 365 nucleotides HP15_3158 and HP15_3159 overlap by 1 nucleotides HP15_3159 and HP15_3160 are separated by 63 nucleotides
HP15_3157: HP15_3157 - homoserine O-acetyltransferase, at 3,310,242 to 3,311,273
_3157
HP15_3158: HP15_3158 - binding-protein-dependent transport systems inner membrane component, at 3,311,639 to 3,312,448
_3158
HP15_3159: HP15_3159 - spermidine/putrescine ABC transporter ATPase subunit, at 3,312,448 to 3,313,233
_3159
HP15_3160: HP15_3160 - quinoprotein alcohol dehydrogenase, at 3,313,297 to 3,315,072
_3160
Position (kb)
3311
3312
3313 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3310.688 kb on + strand, within HP15_3157 at 3310.717 kb on - strand, within HP15_3157 at 3310.717 kb on - strand, within HP15_3157 at 3310.717 kb on - strand, within HP15_3157 at 3310.717 kb on - strand, within HP15_3157 at 3310.731 kb on + strand, within HP15_3157 at 3310.744 kb on - strand, within HP15_3157 at 3310.767 kb on + strand, within HP15_3157 at 3310.767 kb on + strand, within HP15_3157 at 3310.808 kb on + strand, within HP15_3157 at 3310.979 kb on - strand, within HP15_3157 at 3310.991 kb on - strand, within HP15_3157 at 3310.993 kb on - strand, within HP15_3157 at 3311.087 kb on + strand, within HP15_3157 at 3311.105 kb on - strand, within HP15_3157 at 3311.306 kb on + strand at 3311.351 kb on - strand at 3311.383 kb on + strand at 3311.383 kb on + strand at 3311.424 kb on - strand at 3311.428 kb on + strand at 3311.428 kb on + strand at 3311.436 kb on - strand at 3311.436 kb on - strand at 3311.437 kb on + strand at 3311.529 kb on + strand at 3311.534 kb on - strand at 3311.534 kb on - strand at 3311.548 kb on + strand at 3311.598 kb on + strand at 3311.710 kb on + strand at 3311.770 kb on - strand, within HP15_3158 at 3311.780 kb on - strand, within HP15_3158 at 3311.780 kb on - strand, within HP15_3158 at 3311.864 kb on + strand, within HP15_3158 at 3311.947 kb on + strand, within HP15_3158 at 3311.947 kb on + strand, within HP15_3158 at 3311.947 kb on + strand, within HP15_3158 at 3311.955 kb on - strand, within HP15_3158 at 3311.974 kb on - strand, within HP15_3158 at 3312.009 kb on - strand, within HP15_3158 at 3312.061 kb on - strand, within HP15_3158 at 3312.127 kb on - strand, within HP15_3158 at 3312.188 kb on + strand, within HP15_3158 at 3312.193 kb on + strand, within HP15_3158 at 3312.222 kb on - strand, within HP15_3158 at 3312.336 kb on - strand, within HP15_3158 at 3312.349 kb on - strand, within HP15_3158 at 3312.442 kb on + strand at 3312.455 kb on - strand at 3312.489 kb on - strand at 3312.509 kb on + strand at 3312.509 kb on + strand at 3312.509 kb on + strand at 3312.517 kb on - strand at 3312.521 kb on + strand at 3312.557 kb on + strand, within HP15_3159 at 3312.565 kb on - strand, within HP15_3159 at 3312.607 kb on + strand, within HP15_3159 at 3312.701 kb on + strand, within HP15_3159 at 3312.876 kb on - strand, within HP15_3159 at 3313.066 kb on - strand, within HP15_3159 at 3313.179 kb on + strand at 3313.195 kb on - strand at 3313.218 kb on + strand at 3313.334 kb on + strand at 3313.334 kb on + strand at 3313.342 kb on - strand at 3313.343 kb on + strand at 3313.346 kb on - strand at 3313.353 kb on + strand at 3313.370 kb on + strand at 3313.378 kb on - strand at 3313.396 kb on - strand at 3313.401 kb on - strand at 3313.408 kb on + strand at 3313.429 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH6.5 remove 3,310,688 + HP15_3157 0.43 +0.6 3,310,717 - HP15_3157 0.46 -0.8 3,310,717 - HP15_3157 0.46 -0.5 3,310,717 - HP15_3157 0.46 -3.2 3,310,717 - HP15_3157 0.46 -0.9 3,310,731 + HP15_3157 0.47 -0.4 3,310,744 - HP15_3157 0.49 +0.0 3,310,767 + HP15_3157 0.51 +0.5 3,310,767 + HP15_3157 0.51 +1.4 3,310,808 + HP15_3157 0.55 -0.6 3,310,979 - HP15_3157 0.71 +0.1 3,310,991 - HP15_3157 0.73 +0.1 3,310,993 - HP15_3157 0.73 +0.2 3,311,087 + HP15_3157 0.82 -0.2 3,311,105 - HP15_3157 0.84 +0.3 3,311,306 + -0.2 3,311,351 - -0.3 3,311,383 + +0.1 3,311,383 + -0.1 3,311,424 - +1.8 3,311,428 + -0.7 3,311,428 + -0.8 3,311,436 - +0.4 3,311,436 - -0.4 3,311,437 + -0.0 3,311,529 + +0.2 3,311,534 - -0.5 3,311,534 - +0.6 3,311,548 + +0.2 3,311,598 + -0.3 3,311,710 + -0.7 3,311,770 - HP15_3158 0.16 -0.0 3,311,780 - HP15_3158 0.17 +0.6 3,311,780 - HP15_3158 0.17 -0.9 3,311,864 + HP15_3158 0.28 -1.1 3,311,947 + HP15_3158 0.38 -0.1 3,311,947 + HP15_3158 0.38 -0.4 3,311,947 + HP15_3158 0.38 -0.5 3,311,955 - HP15_3158 0.39 +0.4 3,311,974 - HP15_3158 0.41 +0.0 3,312,009 - HP15_3158 0.46 -0.2 3,312,061 - HP15_3158 0.52 -0.2 3,312,127 - HP15_3158 0.60 -0.2 3,312,188 + HP15_3158 0.68 +0.0 3,312,193 + HP15_3158 0.68 -0.1 3,312,222 - HP15_3158 0.72 -0.5 3,312,336 - HP15_3158 0.86 +0.2 3,312,349 - HP15_3158 0.88 -0.5 3,312,442 + +0.1 3,312,455 - +0.2 3,312,489 - +0.1 3,312,509 + +0.4 3,312,509 + -0.2 3,312,509 + +0.8 3,312,517 - +0.4 3,312,521 + -0.2 3,312,557 + HP15_3159 0.14 +0.1 3,312,565 - HP15_3159 0.15 -0.2 3,312,607 + HP15_3159 0.20 -0.6 3,312,701 + HP15_3159 0.32 -0.1 3,312,876 - HP15_3159 0.54 +0.5 3,313,066 - HP15_3159 0.79 +0.3 3,313,179 + +0.4 3,313,195 - +0.1 3,313,218 + -0.6 3,313,334 + +0.5 3,313,334 + +0.0 3,313,342 - +0.2 3,313,343 + +0.5 3,313,346 - -0.1 3,313,353 + +0.6 3,313,370 + -0.3 3,313,378 - -0.1 3,313,396 - -0.2 3,313,401 - +0.4 3,313,408 + -0.3 3,313,429 + +0.3
Or see this region's nucleotide sequence