Experiment: m.b. pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2716 and HP15_2717 are separated by 1 nucleotides HP15_2717 and HP15_2718 are separated by 219 nucleotides HP15_2718 and HP15_2719 are separated by 94 nucleotides
HP15_2716: HP15_2716 - lemA family domain protein, at 2,868,277 to 2,870,478
_2716
HP15_2717: HP15_2717 - enoyl-CoA hydratase, at 2,870,480 to 2,871,178
_2717
HP15_2718: HP15_2718 - transcriptional regulator, LysR family protein, at 2,871,398 to 2,872,288
_2718
HP15_2719: HP15_2719 - transmembrane efflux protein, at 2,872,383 to 2,873,555
_2719
Position (kb)
2871
2872
2873 Strain fitness (log2 ratio)
-2
-1
0
1 at 2870.541 kb on - strand at 2870.553 kb on + strand, within HP15_2717 at 2870.639 kb on - strand, within HP15_2717 at 2870.776 kb on - strand, within HP15_2717 at 2870.849 kb on - strand, within HP15_2717 at 2870.932 kb on + strand, within HP15_2717 at 2870.943 kb on + strand, within HP15_2717 at 2870.951 kb on - strand, within HP15_2717 at 2870.951 kb on - strand, within HP15_2717 at 2871.016 kb on - strand, within HP15_2717 at 2871.050 kb on - strand, within HP15_2717 at 2871.050 kb on - strand, within HP15_2717 at 2871.050 kb on - strand, within HP15_2717 at 2871.050 kb on - strand, within HP15_2717 at 2871.072 kb on + strand, within HP15_2717 at 2871.072 kb on + strand, within HP15_2717 at 2871.181 kb on + strand at 2871.187 kb on - strand at 2871.189 kb on - strand at 2871.190 kb on - strand at 2871.296 kb on + strand at 2871.303 kb on + strand at 2871.304 kb on - strand at 2871.323 kb on - strand at 2871.338 kb on + strand at 2871.445 kb on - strand at 2871.456 kb on + strand at 2871.499 kb on + strand, within HP15_2718 at 2871.540 kb on - strand, within HP15_2718 at 2871.586 kb on - strand, within HP15_2718 at 2871.620 kb on + strand, within HP15_2718 at 2871.622 kb on + strand, within HP15_2718 at 2871.627 kb on + strand, within HP15_2718 at 2871.649 kb on + strand, within HP15_2718 at 2871.649 kb on + strand, within HP15_2718 at 2871.663 kb on + strand, within HP15_2718 at 2871.993 kb on + strand, within HP15_2718 at 2871.993 kb on + strand, within HP15_2718 at 2872.001 kb on - strand, within HP15_2718 at 2872.001 kb on - strand, within HP15_2718 at 2872.002 kb on - strand, within HP15_2718 at 2872.044 kb on - strand, within HP15_2718 at 2872.145 kb on + strand, within HP15_2718 at 2872.228 kb on - strand at 2872.235 kb on + strand at 2872.344 kb on + strand at 2872.457 kb on + strand at 2872.465 kb on - strand at 2872.493 kb on + strand at 2872.493 kb on + strand at 2872.525 kb on + strand, within HP15_2719 at 2872.533 kb on - strand, within HP15_2719 at 2872.588 kb on + strand, within HP15_2719 at 2872.590 kb on + strand, within HP15_2719 at 2872.621 kb on + strand, within HP15_2719 at 2872.757 kb on + strand, within HP15_2719 at 2872.802 kb on + strand, within HP15_2719 at 2872.802 kb on + strand, within HP15_2719 at 2872.867 kb on - strand, within HP15_2719 at 2872.903 kb on - strand, within HP15_2719 at 2872.960 kb on + strand, within HP15_2719 at 2872.969 kb on - strand, within HP15_2719 at 2873.000 kb on + strand, within HP15_2719 at 2873.111 kb on + strand, within HP15_2719 at 2873.119 kb on - strand, within HP15_2719 at 2873.123 kb on + strand, within HP15_2719 at 2873.167 kb on + strand, within HP15_2719 at 2873.167 kb on + strand, within HP15_2719 at 2873.168 kb on + strand, within HP15_2719 at 2873.177 kb on + strand, within HP15_2719 at 2873.179 kb on + strand, within HP15_2719 at 2873.179 kb on + strand, within HP15_2719 at 2873.187 kb on - strand, within HP15_2719 at 2873.206 kb on + strand, within HP15_2719
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH6.5 remove 2,870,541 - -0.1 2,870,553 + HP15_2717 0.10 -0.2 2,870,639 - HP15_2717 0.23 -0.1 2,870,776 - HP15_2717 0.42 +0.3 2,870,849 - HP15_2717 0.53 -0.0 2,870,932 + HP15_2717 0.65 +0.5 2,870,943 + HP15_2717 0.66 +0.1 2,870,951 - HP15_2717 0.67 +0.4 2,870,951 - HP15_2717 0.67 +0.4 2,871,016 - HP15_2717 0.77 -1.1 2,871,050 - HP15_2717 0.82 +0.1 2,871,050 - HP15_2717 0.82 +0.2 2,871,050 - HP15_2717 0.82 +0.4 2,871,050 - HP15_2717 0.82 -0.3 2,871,072 + HP15_2717 0.85 -1.1 2,871,072 + HP15_2717 0.85 -0.8 2,871,181 + -0.0 2,871,187 - +0.0 2,871,189 - +0.7 2,871,190 - -0.2 2,871,296 + +1.5 2,871,303 + +1.0 2,871,304 - +0.1 2,871,323 - +1.3 2,871,338 + -0.6 2,871,445 - -0.1 2,871,456 + +0.4 2,871,499 + HP15_2718 0.11 -0.0 2,871,540 - HP15_2718 0.16 -0.3 2,871,586 - HP15_2718 0.21 -0.1 2,871,620 + HP15_2718 0.25 +0.1 2,871,622 + HP15_2718 0.25 -0.3 2,871,627 + HP15_2718 0.26 +0.2 2,871,649 + HP15_2718 0.28 -0.1 2,871,649 + HP15_2718 0.28 -0.8 2,871,663 + HP15_2718 0.30 -1.2 2,871,993 + HP15_2718 0.67 +0.5 2,871,993 + HP15_2718 0.67 -0.5 2,872,001 - HP15_2718 0.68 -0.6 2,872,001 - HP15_2718 0.68 -0.3 2,872,002 - HP15_2718 0.68 -0.6 2,872,044 - HP15_2718 0.73 -0.2 2,872,145 + HP15_2718 0.84 -0.7 2,872,228 - -1.4 2,872,235 + +0.8 2,872,344 + -0.1 2,872,457 + -0.7 2,872,465 - +0.2 2,872,493 + -0.2 2,872,493 + -1.8 2,872,525 + HP15_2719 0.12 -0.7 2,872,533 - HP15_2719 0.13 -0.6 2,872,588 + HP15_2719 0.17 -0.5 2,872,590 + HP15_2719 0.18 +0.3 2,872,621 + HP15_2719 0.20 +0.9 2,872,757 + HP15_2719 0.32 +0.3 2,872,802 + HP15_2719 0.36 +0.5 2,872,802 + HP15_2719 0.36 +0.2 2,872,867 - HP15_2719 0.41 -0.2 2,872,903 - HP15_2719 0.44 +1.1 2,872,960 + HP15_2719 0.49 -0.3 2,872,969 - HP15_2719 0.50 -0.1 2,873,000 + HP15_2719 0.53 -0.0 2,873,111 + HP15_2719 0.62 +0.1 2,873,119 - HP15_2719 0.63 +0.6 2,873,123 + HP15_2719 0.63 +0.2 2,873,167 + HP15_2719 0.67 -0.1 2,873,167 + HP15_2719 0.67 +0.1 2,873,168 + HP15_2719 0.67 -0.5 2,873,177 + HP15_2719 0.68 +0.5 2,873,179 + HP15_2719 0.68 -0.3 2,873,179 + HP15_2719 0.68 +0.2 2,873,187 - HP15_2719 0.69 -0.1 2,873,206 + HP15_2719 0.70 -0.2
Or see this region's nucleotide sequence