Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02490

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02480 and PGA1_c02490 are separated by 16 nucleotidesPGA1_c02490 and PGA1_c02500 are separated by 7 nucleotidesPGA1_c02500 and PGA1_c02510 are separated by 163 nucleotides PGA1_c02480: PGA1_c02480 - Uncharacterized conserved protein, at 230,949 to 232,286 _c02480 PGA1_c02490: PGA1_c02490 - sporulation protein R-like protein, at 232,303 to 233,781 _c02490 PGA1_c02500: PGA1_c02500 - transcriptional regulator, GntR family, at 233,789 to 234,454 _c02500 PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733 _c02510 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 231.346 kb on + strand, within PGA1_c02480at 231.346 kb on + strand, within PGA1_c02480at 231.346 kb on + strand, within PGA1_c02480at 231.346 kb on + strand, within PGA1_c02480at 231.346 kb on + strand, within PGA1_c02480at 231.354 kb on - strand, within PGA1_c02480at 231.378 kb on + strand, within PGA1_c02480at 231.378 kb on + strand, within PGA1_c02480at 231.414 kb on + strand, within PGA1_c02480at 231.422 kb on - strand, within PGA1_c02480at 231.422 kb on - strand, within PGA1_c02480at 231.443 kb on + strand, within PGA1_c02480at 231.484 kb on + strand, within PGA1_c02480at 231.497 kb on + strand, within PGA1_c02480at 231.502 kb on + strand, within PGA1_c02480at 231.502 kb on + strand, within PGA1_c02480at 231.543 kb on + strand, within PGA1_c02480at 231.584 kb on + strand, within PGA1_c02480at 231.586 kb on - strand, within PGA1_c02480at 231.608 kb on + strand, within PGA1_c02480at 231.615 kb on - strand, within PGA1_c02480at 231.616 kb on - strand, within PGA1_c02480at 231.618 kb on - strand, within PGA1_c02480at 231.623 kb on - strand, within PGA1_c02480at 231.660 kb on + strand, within PGA1_c02480at 231.722 kb on - strand, within PGA1_c02480at 231.742 kb on + strand, within PGA1_c02480at 231.744 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.811 kb on + strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.819 kb on - strand, within PGA1_c02480at 231.860 kb on + strand, within PGA1_c02480at 231.878 kb on - strand, within PGA1_c02480at 231.912 kb on + strand, within PGA1_c02480at 231.919 kb on - strand, within PGA1_c02480at 231.946 kb on + strand, within PGA1_c02480at 231.977 kb on + strand, within PGA1_c02480at 231.977 kb on + strand, within PGA1_c02480at 231.977 kb on + strand, within PGA1_c02480at 231.985 kb on - strand, within PGA1_c02480at 231.985 kb on - strand, within PGA1_c02480at 232.031 kb on + strand, within PGA1_c02480at 232.031 kb on + strand, within PGA1_c02480at 232.041 kb on - strand, within PGA1_c02480at 232.073 kb on + strand, within PGA1_c02480at 232.073 kb on + strand, within PGA1_c02480at 232.073 kb on + strand, within PGA1_c02480at 232.126 kb on + strand, within PGA1_c02480at 232.134 kb on - strand, within PGA1_c02480at 232.134 kb on - strand, within PGA1_c02480at 232.134 kb on - strand, within PGA1_c02480at 232.134 kb on - strand, within PGA1_c02480at 232.134 kb on - strand, within PGA1_c02480at 232.166 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.256 kb on + strandat 232.256 kb on + strandat 232.282 kb on + strandat 232.318 kb on + strandat 232.326 kb on - strandat 232.343 kb on - strandat 232.392 kb on + strandat 232.400 kb on - strandat 232.405 kb on - strandat 232.416 kb on + strandat 232.416 kb on - strandat 232.441 kb on + strandat 232.518 kb on + strand, within PGA1_c02490at 232.536 kb on - strand, within PGA1_c02490at 232.537 kb on + strand, within PGA1_c02490at 232.537 kb on + strand, within PGA1_c02490at 232.545 kb on - strand, within PGA1_c02490at 232.614 kb on - strand, within PGA1_c02490at 232.680 kb on + strand, within PGA1_c02490at 232.685 kb on + strand, within PGA1_c02490at 232.693 kb on - strand, within PGA1_c02490at 232.693 kb on - strand, within PGA1_c02490at 232.693 kb on - strand, within PGA1_c02490at 232.704 kb on - strand, within PGA1_c02490at 232.753 kb on - strand, within PGA1_c02490at 232.754 kb on + strand, within PGA1_c02490at 232.814 kb on - strand, within PGA1_c02490at 232.850 kb on + strand, within PGA1_c02490at 232.944 kb on - strand, within PGA1_c02490at 232.946 kb on + strand, within PGA1_c02490at 232.946 kb on + strand, within PGA1_c02490at 232.946 kb on + strand, within PGA1_c02490at 232.954 kb on - strand, within PGA1_c02490at 232.954 kb on - strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.956 kb on + strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.964 kb on - strand, within PGA1_c02490at 232.968 kb on + strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 232.976 kb on - strand, within PGA1_c02490at 233.046 kb on + strand, within PGA1_c02490at 233.047 kb on - strand, within PGA1_c02490at 233.054 kb on - strand, within PGA1_c02490at 233.054 kb on - strand, within PGA1_c02490at 233.054 kb on - strand, within PGA1_c02490at 233.070 kb on - strand, within PGA1_c02490at 233.078 kb on - strand, within PGA1_c02490at 233.093 kb on - strand, within PGA1_c02490at 233.139 kb on - strand, within PGA1_c02490at 233.186 kb on - strand, within PGA1_c02490at 233.192 kb on + strand, within PGA1_c02490at 233.196 kb on + strand, within PGA1_c02490at 233.228 kb on + strand, within PGA1_c02490at 233.235 kb on - strand, within PGA1_c02490at 233.235 kb on - strand, within PGA1_c02490at 233.242 kb on - strand, within PGA1_c02490at 233.244 kb on + strand, within PGA1_c02490at 233.325 kb on + strand, within PGA1_c02490at 233.353 kb on + strand, within PGA1_c02490at 233.426 kb on + strand, within PGA1_c02490at 233.459 kb on - strand, within PGA1_c02490at 233.495 kb on - strand, within PGA1_c02490at 233.572 kb on + strand, within PGA1_c02490at 233.603 kb on - strand, within PGA1_c02490at 233.634 kb on + strandat 233.634 kb on + strandat 233.634 kb on + strandat 233.634 kb on + strandat 233.642 kb on - strandat 233.642 kb on - strandat 233.669 kb on - strandat 233.681 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.761 kb on - strandat 233.795 kb on + strandat 233.812 kb on - strandat 233.911 kb on + strand, within PGA1_c02500at 234.014 kb on - strand, within PGA1_c02500at 234.019 kb on + strand, within PGA1_c02500at 234.034 kb on - strand, within PGA1_c02500at 234.133 kb on + strand, within PGA1_c02500at 234.146 kb on - strand, within PGA1_c02500at 234.237 kb on + strand, within PGA1_c02500at 234.245 kb on - strand, within PGA1_c02500at 234.245 kb on - strand, within PGA1_c02500at 234.255 kb on - strand, within PGA1_c02500at 234.266 kb on + strand, within PGA1_c02500at 234.271 kb on + strand, within PGA1_c02500at 234.304 kb on + strand, within PGA1_c02500at 234.423 kb on + strandat 234.484 kb on - strandat 234.590 kb on + strandat 234.600 kb on - strandat 234.662 kb on + strandat 234.695 kb on + strandat 234.695 kb on + strandat 234.703 kb on - strandat 234.703 kb on - strandat 234.703 kb on - strandat 234.734 kb on + strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.759 kb on - strand, within PGA1_c02510at 234.764 kb on - strand, within PGA1_c02510

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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231,346 + PGA1_c02480 0.30 -0.8
231,346 + PGA1_c02480 0.30 -0.9
231,346 + PGA1_c02480 0.30 -1.4
231,346 + PGA1_c02480 0.30 -0.3
231,346 + PGA1_c02480 0.30 -0.9
231,354 - PGA1_c02480 0.30 -0.8
231,378 + PGA1_c02480 0.32 -1.2
231,378 + PGA1_c02480 0.32 +0.3
231,414 + PGA1_c02480 0.35 -2.8
231,422 - PGA1_c02480 0.35 -0.3
231,422 - PGA1_c02480 0.35 +0.7
231,443 + PGA1_c02480 0.37 +0.6
231,484 + PGA1_c02480 0.40 -0.2
231,497 + PGA1_c02480 0.41 -1.2
231,502 + PGA1_c02480 0.41 +1.4
231,502 + PGA1_c02480 0.41 +0.3
231,543 + PGA1_c02480 0.44 -1.9
231,584 + PGA1_c02480 0.47 -1.2
231,586 - PGA1_c02480 0.48 +0.4
231,608 + PGA1_c02480 0.49 -1.3
231,615 - PGA1_c02480 0.50 -2.5
231,616 - PGA1_c02480 0.50 +1.8
231,618 - PGA1_c02480 0.50 -1.4
231,623 - PGA1_c02480 0.50 +0.6
231,660 + PGA1_c02480 0.53 +0.3
231,722 - PGA1_c02480 0.58 -0.3
231,742 + PGA1_c02480 0.59 +0.3
231,744 + PGA1_c02480 0.59 -0.2
231,811 + PGA1_c02480 0.64 +0.6
231,811 + PGA1_c02480 0.64 +0.3
231,811 + PGA1_c02480 0.64 +0.3
231,811 + PGA1_c02480 0.64 +0.0
231,811 + PGA1_c02480 0.64 +0.9
231,811 + PGA1_c02480 0.64 +0.2
231,811 + PGA1_c02480 0.64 -0.9
231,811 + PGA1_c02480 0.64 +0.4
231,811 + PGA1_c02480 0.64 -1.0
231,811 + PGA1_c02480 0.64 +0.3
231,819 - PGA1_c02480 0.65 -1.0
231,819 - PGA1_c02480 0.65 -1.2
231,819 - PGA1_c02480 0.65 +0.1
231,819 - PGA1_c02480 0.65 +0.5
231,819 - PGA1_c02480 0.65 -2.1
231,819 - PGA1_c02480 0.65 -2.3
231,819 - PGA1_c02480 0.65 -0.1
231,819 - PGA1_c02480 0.65 +4.0
231,819 - PGA1_c02480 0.65 -0.3
231,819 - PGA1_c02480 0.65 -0.3
231,819 - PGA1_c02480 0.65 -2.0
231,819 - PGA1_c02480 0.65 +1.1
231,819 - PGA1_c02480 0.65 -0.4
231,819 - PGA1_c02480 0.65 +1.4
231,819 - PGA1_c02480 0.65 -2.3
231,819 - PGA1_c02480 0.65 -1.1
231,819 - PGA1_c02480 0.65 -0.5
231,819 - PGA1_c02480 0.65 +0.7
231,860 + PGA1_c02480 0.68 +0.3
231,878 - PGA1_c02480 0.69 +1.4
231,912 + PGA1_c02480 0.72 -0.9
231,919 - PGA1_c02480 0.72 +0.2
231,946 + PGA1_c02480 0.75 -1.3
231,977 + PGA1_c02480 0.77 +0.4
231,977 + PGA1_c02480 0.77 -1.4
231,977 + PGA1_c02480 0.77 +0.0
231,985 - PGA1_c02480 0.77 -2.2
231,985 - PGA1_c02480 0.77 +0.5
232,031 + PGA1_c02480 0.81 +0.4
232,031 + PGA1_c02480 0.81 +0.3
232,041 - PGA1_c02480 0.82 -2.7
232,073 + PGA1_c02480 0.84 -1.6
232,073 + PGA1_c02480 0.84 -0.9
232,073 + PGA1_c02480 0.84 -0.6
232,126 + PGA1_c02480 0.88 -0.4
232,134 - PGA1_c02480 0.89 -0.2
232,134 - PGA1_c02480 0.89 -1.0
232,134 - PGA1_c02480 0.89 +1.0
232,134 - PGA1_c02480 0.89 +0.7
232,134 - PGA1_c02480 0.89 -1.2
232,166 + +2.1
232,172 + +0.8
232,172 + +0.3
232,256 + -0.5
232,256 + +0.5
232,282 + -1.6
232,318 + +0.1
232,326 - -0.9
232,343 - +1.1
232,392 + -2.6
232,400 - -0.7
232,405 - -2.9
232,416 + -0.4
232,416 - -2.1
232,441 + +0.1
232,518 + PGA1_c02490 0.15 +2.0
232,536 - PGA1_c02490 0.16 +0.1
232,537 + PGA1_c02490 0.16 -0.6
232,537 + PGA1_c02490 0.16 -0.7
232,545 - PGA1_c02490 0.16 -2.6
232,614 - PGA1_c02490 0.21 +1.2
232,680 + PGA1_c02490 0.25 -1.6
232,685 + PGA1_c02490 0.26 +0.3
232,693 - PGA1_c02490 0.26 +0.7
232,693 - PGA1_c02490 0.26 +2.0
232,693 - PGA1_c02490 0.26 +0.6
232,704 - PGA1_c02490 0.27 -0.0
232,753 - PGA1_c02490 0.30 -1.7
232,754 + PGA1_c02490 0.30 -2.2
232,814 - PGA1_c02490 0.35 -0.2
232,850 + PGA1_c02490 0.37 -2.0
232,944 - PGA1_c02490 0.43 -0.6
232,946 + PGA1_c02490 0.43 -2.2
232,946 + PGA1_c02490 0.43 -0.0
232,946 + PGA1_c02490 0.43 -2.5
232,954 - PGA1_c02490 0.44 -0.4
232,954 - PGA1_c02490 0.44 -0.5
232,956 + PGA1_c02490 0.44 +0.1
232,956 + PGA1_c02490 0.44 +0.4
232,956 + PGA1_c02490 0.44 -0.4
232,956 + PGA1_c02490 0.44 +0.2
232,964 - PGA1_c02490 0.45 +2.0
232,964 - PGA1_c02490 0.45 +1.0
232,964 - PGA1_c02490 0.45 +0.8
232,964 - PGA1_c02490 0.45 -0.2
232,964 - PGA1_c02490 0.45 +1.3
232,964 - PGA1_c02490 0.45 -0.2
232,964 - PGA1_c02490 0.45 +1.2
232,964 - PGA1_c02490 0.45 -1.7
232,964 - PGA1_c02490 0.45 -0.6
232,968 + PGA1_c02490 0.45 +0.1
232,976 - PGA1_c02490 0.46 -0.0
232,976 - PGA1_c02490 0.46 -0.7
232,976 - PGA1_c02490 0.46 +0.4
232,976 - PGA1_c02490 0.46 -0.6
233,046 + PGA1_c02490 0.50 -1.6
233,047 - PGA1_c02490 0.50 -0.8
233,054 - PGA1_c02490 0.51 -0.2
233,054 - PGA1_c02490 0.51 -0.3
233,054 - PGA1_c02490 0.51 +0.6
233,070 - PGA1_c02490 0.52 +0.4
233,078 - PGA1_c02490 0.52 -1.0
233,093 - PGA1_c02490 0.53 -0.7
233,139 - PGA1_c02490 0.57 -1.3
233,186 - PGA1_c02490 0.60 -2.0
233,192 + PGA1_c02490 0.60 +1.2
233,196 + PGA1_c02490 0.60 -0.5
233,228 + PGA1_c02490 0.63 -1.6
233,235 - PGA1_c02490 0.63 -0.1
233,235 - PGA1_c02490 0.63 -1.0
233,242 - PGA1_c02490 0.63 +0.1
233,244 + PGA1_c02490 0.64 +0.8
233,325 + PGA1_c02490 0.69 +0.1
233,353 + PGA1_c02490 0.71 -0.4
233,426 + PGA1_c02490 0.76 -0.2
233,459 - PGA1_c02490 0.78 +0.3
233,495 - PGA1_c02490 0.81 +0.7
233,572 + PGA1_c02490 0.86 -0.2
233,603 - PGA1_c02490 0.88 -1.2
233,634 + -0.3
233,634 + -2.0
233,634 + +1.1
233,634 + -0.4
233,642 - -1.7
233,642 - +0.2
233,669 - -2.0
233,681 + -0.5
233,732 + -0.3
233,732 + -1.6
233,732 + -0.0
233,732 + +0.6
233,732 + +0.3
233,732 + -0.4
233,732 + -0.6
233,740 - -1.2
233,740 - -1.0
233,740 - -1.6
233,740 - -1.0
233,761 - -2.2
233,795 + +0.0
233,812 - -2.0
233,911 + PGA1_c02500 0.18 -1.8
234,014 - PGA1_c02500 0.34 +0.4
234,019 + PGA1_c02500 0.35 -0.3
234,034 - PGA1_c02500 0.37 -2.4
234,133 + PGA1_c02500 0.52 +1.7
234,146 - PGA1_c02500 0.54 -0.9
234,237 + PGA1_c02500 0.67 +1.7
234,245 - PGA1_c02500 0.68 +0.4
234,245 - PGA1_c02500 0.68 -0.0
234,255 - PGA1_c02500 0.70 -1.2
234,266 + PGA1_c02500 0.72 +1.4
234,271 + PGA1_c02500 0.72 +0.3
234,304 + PGA1_c02500 0.77 +1.3
234,423 + +1.9
234,484 - +1.2
234,590 + -1.4
234,600 - -0.1
234,662 + -0.9
234,695 + -0.3
234,695 + +0.8
234,703 - -1.0
234,703 - +0.1
234,703 - -0.3
234,734 + PGA1_c02510 0.10 -0.5
234,742 - PGA1_c02510 0.11 +0.6
234,742 - PGA1_c02510 0.11 -0.6
234,742 - PGA1_c02510 0.11 +1.7
234,759 - PGA1_c02510 0.13 +1.7
234,764 - PGA1_c02510 0.13 +0.3

Or see this region's nucleotide sequence