Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02280 and PGA1_c02290 are separated by 2 nucleotides PGA1_c02290 and PGA1_c02300 overlap by 8 nucleotides
PGA1_c02280: PGA1_c02280 - hypothetical protein, at 204,727 to 205,677
_c02280
PGA1_c02290: PGA1_c02290 - putative NAD dependent epimerase/dehydratase, at 205,680 to 206,477
_c02290
PGA1_c02300: PGA1_c02300 - putative glycosyl transferase, at 206,470 to 207,246
_c02300
Position (kb) 204
205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 203.744 kb on + strand at 203.826 kb on + strand at 203.840 kb on - strand at 203.888 kb on + strand at 203.902 kb on + strand at 203.951 kb on + strand at 204.022 kb on + strand at 204.033 kb on + strand at 204.072 kb on + strand at 204.098 kb on + strand at 204.098 kb on + strand at 204.098 kb on + strand at 204.098 kb on + strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.120 kb on + strand at 204.163 kb on - strand at 204.163 kb on - strand at 204.163 kb on - strand at 204.165 kb on + strand at 204.168 kb on - strand at 204.211 kb on + strand at 204.211 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.307 kb on - strand at 204.315 kb on - strand at 204.324 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.342 kb on - strand at 204.342 kb on - strand at 204.342 kb on - strand at 204.342 kb on - strand at 204.346 kb on + strand at 204.354 kb on - strand at 204.356 kb on + strand at 204.356 kb on + strand at 204.364 kb on - strand at 204.439 kb on - strand at 204.441 kb on + strand at 204.445 kb on + strand at 204.447 kb on - strand at 204.447 kb on - strand at 204.463 kb on - strand at 204.485 kb on - strand at 204.494 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.497 kb on - strand at 204.503 kb on - strand at 204.503 kb on - strand at 204.543 kb on + strand at 204.552 kb on - strand at 204.554 kb on + strand at 204.605 kb on + strand at 204.625 kb on + strand at 204.630 kb on + strand at 204.668 kb on - strand at 204.668 kb on - strand at 204.749 kb on - strand at 204.794 kb on + strand at 204.803 kb on + strand at 204.811 kb on - strand at 204.821 kb on + strand at 204.845 kb on + strand, within PGA1_c02280 at 204.848 kb on - strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.887 kb on - strand, within PGA1_c02280 at 204.897 kb on - strand, within PGA1_c02280 at 204.908 kb on - strand, within PGA1_c02280 at 204.918 kb on - strand, within PGA1_c02280 at 204.939 kb on - strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.989 kb on + strand, within PGA1_c02280 at 204.994 kb on + strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.999 kb on + strand, within PGA1_c02280 at 205.017 kb on + strand, within PGA1_c02280 at 205.025 kb on - strand, within PGA1_c02280 at 205.059 kb on - strand, within PGA1_c02280 at 205.073 kb on - strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.131 kb on - strand, within PGA1_c02280 at 205.153 kb on + strand, within PGA1_c02280 at 205.208 kb on - strand, within PGA1_c02280 at 205.229 kb on + strand, within PGA1_c02280 at 205.247 kb on + strand, within PGA1_c02280 at 205.247 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.285 kb on + strand, within PGA1_c02280 at 205.290 kb on + strand, within PGA1_c02280 at 205.293 kb on - strand, within PGA1_c02280 at 205.294 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.362 kb on + strand, within PGA1_c02280 at 205.370 kb on - strand, within PGA1_c02280 at 205.376 kb on - strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.450 kb on + strand, within PGA1_c02280 at 205.455 kb on + strand, within PGA1_c02280 at 205.458 kb on - strand, within PGA1_c02280 at 205.463 kb on - strand, within PGA1_c02280 at 205.477 kb on + strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.485 kb on - strand, within PGA1_c02280 at 205.491 kb on + strand, within PGA1_c02280 at 205.548 kb on - strand, within PGA1_c02280 at 205.549 kb on - strand, within PGA1_c02280 at 205.578 kb on + strand, within PGA1_c02280 at 205.601 kb on + strand at 205.638 kb on - strand at 205.724 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.734 kb on - strand at 205.739 kb on - strand at 205.750 kb on + strand at 205.759 kb on - strand at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.807 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.815 kb on - strand, within PGA1_c02290 at 205.820 kb on - strand, within PGA1_c02290 at 205.836 kb on - strand, within PGA1_c02290 at 205.864 kb on + strand, within PGA1_c02290 at 205.882 kb on - strand, within PGA1_c02290 at 205.888 kb on + strand, within PGA1_c02290 at 205.960 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 206.008 kb on + strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.074 kb on + strand, within PGA1_c02290 at 206.077 kb on - strand, within PGA1_c02290 at 206.096 kb on + strand, within PGA1_c02290 at 206.179 kb on + strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.232 kb on - strand, within PGA1_c02290 at 206.239 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.306 kb on + strand, within PGA1_c02290 at 206.319 kb on + strand, within PGA1_c02290 at 206.436 kb on - strand at 206.441 kb on - strand at 206.445 kb on - strand at 206.448 kb on + strand at 206.449 kb on + strand at 206.502 kb on + strand at 206.523 kb on + strand at 206.526 kb on - strand at 206.531 kb on - strand at 206.531 kb on - strand at 206.538 kb on - strand at 206.571 kb on + strand, within PGA1_c02300 at 206.575 kb on - strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.600 kb on + strand, within PGA1_c02300 at 206.603 kb on + strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 203,744 + -0.5 203,826 + -1.5 203,840 - -0.6 203,888 + -1.2 203,902 + -0.9 203,951 + +1.2 204,022 + +0.7 204,033 + -0.3 204,072 + -0.8 204,098 + +0.1 204,098 + -0.0 204,098 + -0.6 204,098 + -0.3 204,106 - +1.4 204,106 - -0.0 204,106 - -0.6 204,106 - -0.8 204,106 - -2.3 204,106 - -0.6 204,120 + +0.1 204,163 - -0.3 204,163 - -0.7 204,163 - -0.5 204,165 + +0.3 204,168 - +0.4 204,211 + -1.2 204,211 + -0.2 204,251 + -0.6 204,251 + +0.1 204,307 - +0.4 204,315 - -0.7 204,324 + -0.2 204,334 + -1.7 204,334 + -1.6 204,334 + -1.1 204,334 + -0.0 204,334 + +0.3 204,342 - +0.8 204,342 - -0.6 204,342 - +0.8 204,342 - -2.0 204,346 + +0.2 204,354 - +0.7 204,356 + +1.3 204,356 + +1.2 204,364 - -2.3 204,439 - -0.3 204,441 + -0.9 204,445 + -0.8 204,447 - -0.8 204,447 - -0.7 204,463 - -0.5 204,485 - -0.3 204,494 + +0.6 204,495 + -1.2 204,495 + +0.1 204,495 + +1.1 204,495 + -0.2 204,495 + +0.9 204,495 + -0.7 204,495 + -2.3 204,497 - -0.2 204,503 - +0.4 204,503 - +1.3 204,543 + +0.7 204,552 - -2.0 204,554 + +0.6 204,605 + +0.1 204,625 + +1.4 204,630 + +0.7 204,668 - +0.4 204,668 - -0.7 204,749 - -0.3 204,794 + +1.3 204,803 + -1.5 204,811 - +0.4 204,821 + -0.5 204,845 + PGA1_c02280 0.12 -0.2 204,848 - PGA1_c02280 0.13 +1.0 204,852 + PGA1_c02280 0.13 +0.0 204,852 + PGA1_c02280 0.13 +0.6 204,852 + PGA1_c02280 0.13 -1.7 204,887 - PGA1_c02280 0.17 +0.6 204,897 - PGA1_c02280 0.18 -0.7 204,908 - PGA1_c02280 0.19 +0.0 204,918 - PGA1_c02280 0.20 -1.9 204,939 - PGA1_c02280 0.22 +0.5 204,952 + PGA1_c02280 0.24 +0.4 204,952 + PGA1_c02280 0.24 +0.4 204,952 + PGA1_c02280 0.24 +0.3 204,960 - PGA1_c02280 0.25 -0.7 204,960 - PGA1_c02280 0.25 -0.2 204,960 - PGA1_c02280 0.25 +0.1 204,989 + PGA1_c02280 0.28 -1.7 204,994 + PGA1_c02280 0.28 -0.6 204,997 - PGA1_c02280 0.28 -0.4 204,997 - PGA1_c02280 0.28 -0.2 204,999 + PGA1_c02280 0.29 -0.2 205,017 + PGA1_c02280 0.30 +1.6 205,025 - PGA1_c02280 0.31 +0.1 205,059 - PGA1_c02280 0.35 +0.9 205,073 - PGA1_c02280 0.36 -1.8 205,118 + PGA1_c02280 0.41 +0.3 205,118 + PGA1_c02280 0.41 +0.4 205,118 + PGA1_c02280 0.41 -0.3 205,118 + PGA1_c02280 0.41 -0.3 205,126 - PGA1_c02280 0.42 -1.7 205,126 - PGA1_c02280 0.42 -1.1 205,126 - PGA1_c02280 0.42 -0.9 205,126 - PGA1_c02280 0.42 -0.2 205,126 - PGA1_c02280 0.42 +0.2 205,126 - PGA1_c02280 0.42 +0.9 205,131 - PGA1_c02280 0.42 +0.7 205,153 + PGA1_c02280 0.45 -1.2 205,208 - PGA1_c02280 0.51 +1.0 205,229 + PGA1_c02280 0.53 +0.9 205,247 + PGA1_c02280 0.55 +0.7 205,247 - PGA1_c02280 0.55 +0.2 205,255 - PGA1_c02280 0.56 +0.2 205,255 - PGA1_c02280 0.56 -1.6 205,255 - PGA1_c02280 0.56 -1.7 205,285 + PGA1_c02280 0.59 -2.4 205,290 + PGA1_c02280 0.59 +0.1 205,293 - PGA1_c02280 0.60 +0.7 205,294 - PGA1_c02280 0.60 -0.2 205,298 - PGA1_c02280 0.60 +1.0 205,298 - PGA1_c02280 0.60 -0.7 205,298 - PGA1_c02280 0.60 -0.8 205,298 - PGA1_c02280 0.60 +0.8 205,313 + PGA1_c02280 0.62 -0.2 205,313 + PGA1_c02280 0.62 -2.2 205,313 + PGA1_c02280 0.62 -1.1 205,321 - PGA1_c02280 0.62 -1.7 205,321 - PGA1_c02280 0.62 -0.5 205,362 + PGA1_c02280 0.67 -0.5 205,370 - PGA1_c02280 0.68 +0.4 205,376 - PGA1_c02280 0.68 +0.6 205,410 + PGA1_c02280 0.72 -0.3 205,410 + PGA1_c02280 0.72 +0.2 205,410 + PGA1_c02280 0.72 -2.0 205,410 + PGA1_c02280 0.72 -0.4 205,410 + PGA1_c02280 0.72 +1.1 205,410 + PGA1_c02280 0.72 +1.0 205,410 + PGA1_c02280 0.72 -1.4 205,410 + PGA1_c02280 0.72 -1.5 205,410 + PGA1_c02280 0.72 -0.2 205,410 + PGA1_c02280 0.72 -2.3 205,418 - PGA1_c02280 0.73 -0.7 205,418 - PGA1_c02280 0.73 -0.2 205,418 - PGA1_c02280 0.73 +0.1 205,418 - PGA1_c02280 0.73 +0.3 205,418 - PGA1_c02280 0.73 -2.9 205,450 + PGA1_c02280 0.76 -0.7 205,455 + PGA1_c02280 0.77 +0.2 205,458 - PGA1_c02280 0.77 -1.7 205,463 - PGA1_c02280 0.77 -0.1 205,477 + PGA1_c02280 0.79 -0.7 205,483 - PGA1_c02280 0.79 -0.8 205,483 - PGA1_c02280 0.79 +0.0 205,485 - PGA1_c02280 0.80 -0.4 205,491 + PGA1_c02280 0.80 -0.2 205,548 - PGA1_c02280 0.86 -0.4 205,549 - PGA1_c02280 0.86 +1.9 205,578 + PGA1_c02280 0.89 +0.2 205,601 + -0.3 205,638 - -0.5 205,724 + -0.2 205,731 + +0.4 205,731 + +1.1 205,731 + +0.6 205,734 - +2.3 205,739 - -2.9 205,750 + +1.7 205,759 - -1.9 205,783 + PGA1_c02290 0.13 -0.4 205,783 + PGA1_c02290 0.13 -0.3 205,783 + PGA1_c02290 0.13 +0.3 205,788 + PGA1_c02290 0.14 +1.2 205,788 + PGA1_c02290 0.14 -0.2 205,791 - PGA1_c02290 0.14 +0.6 205,791 - PGA1_c02290 0.14 -1.2 205,796 - PGA1_c02290 0.15 -1.4 205,796 - PGA1_c02290 0.15 +0.4 205,807 + PGA1_c02290 0.16 -0.0 205,812 + PGA1_c02290 0.17 -0.6 205,812 + PGA1_c02290 0.17 +1.2 205,812 + PGA1_c02290 0.17 -0.5 205,815 - PGA1_c02290 0.17 +0.8 205,820 - PGA1_c02290 0.18 -1.0 205,836 - PGA1_c02290 0.20 +0.6 205,864 + PGA1_c02290 0.23 +0.3 205,882 - PGA1_c02290 0.25 -0.2 205,888 + PGA1_c02290 0.26 -0.2 205,960 + PGA1_c02290 0.35 -0.2 205,994 + PGA1_c02290 0.39 -1.6 205,994 + PGA1_c02290 0.39 +0.7 206,008 + PGA1_c02290 0.41 +2.0 206,012 - PGA1_c02290 0.42 +0.1 206,012 - PGA1_c02290 0.42 -0.4 206,074 + PGA1_c02290 0.49 +0.5 206,077 - PGA1_c02290 0.50 +1.8 206,096 + PGA1_c02290 0.52 -0.2 206,179 + PGA1_c02290 0.63 +0.4 206,215 - PGA1_c02290 0.67 +0.6 206,215 - PGA1_c02290 0.67 -2.6 206,232 - PGA1_c02290 0.69 +0.1 206,239 + PGA1_c02290 0.70 -0.2 206,270 + PGA1_c02290 0.74 +0.1 206,270 + PGA1_c02290 0.74 -0.4 206,278 - PGA1_c02290 0.75 -0.4 206,278 - PGA1_c02290 0.75 -0.3 206,278 - PGA1_c02290 0.75 +0.2 206,278 - PGA1_c02290 0.75 -0.2 206,278 - PGA1_c02290 0.75 -0.6 206,278 - PGA1_c02290 0.75 +0.2 206,306 + PGA1_c02290 0.78 -0.9 206,319 + PGA1_c02290 0.80 -0.9 206,436 - +0.2 206,441 - -1.0 206,445 - +0.4 206,448 + +0.2 206,449 + -0.3 206,502 + +0.4 206,523 + -0.3 206,526 - -1.7 206,531 - +0.8 206,531 - +1.0 206,538 - -1.7 206,571 + PGA1_c02300 0.13 -0.3 206,575 - PGA1_c02300 0.14 -0.4 206,586 + PGA1_c02300 0.15 +1.8 206,586 + PGA1_c02300 0.15 +1.8 206,600 + PGA1_c02300 0.17 +0.4 206,603 + PGA1_c02300 0.17 +1.2 206,608 - PGA1_c02300 0.18 +0.0 206,608 - PGA1_c02300 0.18 +0.4
Or see this region's nucleotide sequence