Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14330

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c14310 and PGA1_c14320 are separated by 4 nucleotidesPGA1_c14320 and PGA1_c14330 overlap by 4 nucleotidesPGA1_c14330 and PGA1_c14340 are separated by 271 nucleotides PGA1_c14310: PGA1_c14310 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase LpxA, at 1,485,846 to 1,486,631 _c14310 PGA1_c14320: PGA1_c14320 - Uncharacterized protein conserved in bacteria, at 1,486,636 to 1,487,424 _c14320 PGA1_c14330: PGA1_c14330 - lipid-A-disaccharide synthase LpxB, at 1,487,421 to 1,488,602 _c14330 PGA1_c14340: PGA1_c14340 - tRNA-specific 2-thiouridylase MnmA, at 1,488,874 to 1,490,019 _c14340 Position (kb) 1487 1488 1489Strain fitness (log2 ratio) -1 0 1 2at 1488.754 kb on - strandat 1488.756 kb on + strandat 1488.759 kb on - strandat 1488.799 kb on - strandat 1488.810 kb on - strandat 1488.821 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
1,488,754 - +0.5
1,488,756 + -0.0
1,488,759 - +2.2
1,488,799 - +0.4
1,488,810 - +1.3
1,488,821 - -0.1

Or see this region's nucleotide sequence