Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01030 and PGA1_c01040 are separated by 59 nucleotides PGA1_c01040 and PGA1_c01050 are separated by 63 nucleotides PGA1_c01050 and PGA1_c01060 overlap by 4 nucleotides PGA1_c01060 and PGA1_c01070 overlap by 4 nucleotides
PGA1_c01030: PGA1_c01030 - pyridoxine 5'-phosphate synthase PdxJ, at 97,681 to 98,442
_c01030
PGA1_c01040: PGA1_c01040 - holo-[acyl-carrier-protein] synthase AcpS, at 98,502 to 98,933
_c01040
PGA1_c01050: PGA1_c01050 - putative signal peptidase I, at 98,997 to 99,833
_c01050
PGA1_c01060: PGA1_c01060 - ribonuclease 3, at 99,830 to 100,516
_c01060
PGA1_c01070: PGA1_c01070 - GTP-binding protein Era, at 100,513 to 101,418
_c01070
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.481 kb on - strand at 98.488 kb on + strand at 98.491 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.498 kb on + strand at 98.505 kb on + strand at 98.513 kb on + strand at 98.554 kb on + strand, within PGA1_c01040 at 98.599 kb on + strand, within PGA1_c01040 at 98.607 kb on - strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.616 kb on + strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.654 kb on + strand, within PGA1_c01040 at 98.685 kb on - strand, within PGA1_c01040 at 98.697 kb on + strand, within PGA1_c01040 at 98.697 kb on + strand, within PGA1_c01040 at 98.800 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.863 kb on - strand, within PGA1_c01040 at 98.867 kb on + strand, within PGA1_c01040 at 98.875 kb on - strand, within PGA1_c01040 at 99.838 kb on + strand at 99.846 kb on - strand at 99.846 kb on - strand at 99.999 kb on - strand, within PGA1_c01060 at 100.182 kb on - strand, within PGA1_c01060 at 100.198 kb on + strand, within PGA1_c01060 at 100.255 kb on + strand, within PGA1_c01060 at 100.263 kb on - strand, within PGA1_c01060 at 100.300 kb on + strand, within PGA1_c01060 at 100.345 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 98,481 - -1.5 98,488 + -0.1 98,491 - +0.8 98,496 - -2.3 98,496 - -0.5 98,496 - -0.9 98,498 + -0.6 98,505 + -1.4 98,513 + +0.4 98,554 + PGA1_c01040 0.12 -0.2 98,599 + PGA1_c01040 0.22 +0.1 98,607 - PGA1_c01040 0.24 +0.9 98,609 + PGA1_c01040 0.25 -0.1 98,609 + PGA1_c01040 0.25 +0.3 98,609 + PGA1_c01040 0.25 +1.4 98,609 + PGA1_c01040 0.25 +0.2 98,609 + PGA1_c01040 0.25 -0.6 98,609 + PGA1_c01040 0.25 +0.5 98,609 + PGA1_c01040 0.25 -0.7 98,609 + PGA1_c01040 0.25 -0.4 98,609 + PGA1_c01040 0.25 +0.3 98,609 + PGA1_c01040 0.25 +0.0 98,609 + PGA1_c01040 0.25 -1.4 98,609 + PGA1_c01040 0.25 +0.4 98,609 + PGA1_c01040 0.25 +0.3 98,616 + PGA1_c01040 0.26 -0.3 98,617 - PGA1_c01040 0.27 -0.4 98,617 - PGA1_c01040 0.27 -0.8 98,617 - PGA1_c01040 0.27 +0.7 98,617 - PGA1_c01040 0.27 +1.3 98,617 - PGA1_c01040 0.27 +0.4 98,617 - PGA1_c01040 0.27 +0.1 98,617 - PGA1_c01040 0.27 +1.2 98,617 - PGA1_c01040 0.27 -0.7 98,617 - PGA1_c01040 0.27 -0.6 98,617 - PGA1_c01040 0.27 +0.6 98,617 - PGA1_c01040 0.27 +1.4 98,617 - PGA1_c01040 0.27 +0.3 98,617 - PGA1_c01040 0.27 -0.4 98,617 - PGA1_c01040 0.27 -0.9 98,617 - PGA1_c01040 0.27 +0.2 98,617 - PGA1_c01040 0.27 +0.1 98,617 - PGA1_c01040 0.27 -1.0 98,617 - PGA1_c01040 0.27 +0.6 98,654 + PGA1_c01040 0.35 -0.0 98,685 - PGA1_c01040 0.42 -0.6 98,697 + PGA1_c01040 0.45 -0.0 98,697 + PGA1_c01040 0.45 +0.1 98,800 + PGA1_c01040 0.69 +2.0 98,855 + PGA1_c01040 0.82 +0.1 98,855 + PGA1_c01040 0.82 +0.8 98,855 + PGA1_c01040 0.82 +0.8 98,863 - PGA1_c01040 0.84 -0.1 98,867 + PGA1_c01040 0.84 +0.4 98,875 - PGA1_c01040 0.86 -1.7 99,838 + +0.4 99,846 - -2.4 99,846 - +0.6 99,999 - PGA1_c01060 0.25 +0.7 100,182 - PGA1_c01060 0.51 -1.2 100,198 + PGA1_c01060 0.54 +0.4 100,255 + PGA1_c01060 0.62 -1.0 100,263 - PGA1_c01060 0.63 -1.2 100,300 + PGA1_c01060 0.68 -0.9 100,345 + PGA1_c01060 0.75 +0.8 100,425 + PGA1_c01060 0.87 +1.5 100,425 + PGA1_c01060 0.87 -2.4
Or see this region's nucleotide sequence