Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2740 and Dshi_2741 are separated by 42 nucleotides Dshi_2741 and Dshi_2742 are separated by 24 nucleotides Dshi_2742 and Dshi_2743 are separated by 200 nucleotides Dshi_2743 and Dshi_2744 are separated by 191 nucleotides
Dshi_2740: Dshi_2740 - putative CheA signal transduction histidine kinase (RefSeq), at 2,901,566 to 2,903,512
_2740
Dshi_2741: Dshi_2741 - hypothetical protein (RefSeq), at 2,903,555 to 2,903,791
_2741
Dshi_2742: Dshi_2742 - Adenylosuccinate synthase (RefSeq), at 2,903,816 to 2,905,111
_2742
Dshi_2743: Dshi_2743 - preprotein translocase, SecG subunit (RefSeq), at 2,905,312 to 2,905,680
_2743
Dshi_2744: Dshi_2744 - CTP synthase (RefSeq), at 2,905,872 to 2,907,515
_2744
Position (kb)
2903
2904
2905
2906 Strain fitness (log2 ratio)
-1
0
1 at 2902.963 kb on + strand, within Dshi_2740 at 2903.317 kb on - strand, within Dshi_2740 at 2903.319 kb on - strand at 2903.403 kb on + strand at 2903.460 kb on + strand at 2903.514 kb on - strand at 2903.592 kb on + strand, within Dshi_2741 at 2903.592 kb on + strand, within Dshi_2741 at 2903.592 kb on + strand, within Dshi_2741 at 2903.600 kb on - strand, within Dshi_2741 at 2903.752 kb on + strand, within Dshi_2741 at 2905.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,902,963 + Dshi_2740 0.72 +0.0 2,903,317 - Dshi_2740 0.90 +0.2 2,903,319 - -0.5 2,903,403 + +0.5 2,903,460 + -0.1 2,903,514 - -0.8 2,903,592 + Dshi_2741 0.16 -0.3 2,903,592 + Dshi_2741 0.16 -0.2 2,903,592 + Dshi_2741 0.16 -1.0 2,903,600 - Dshi_2741 0.19 +0.0 2,903,752 + Dshi_2741 0.83 +0.2 2,905,235 + +0.1
Or see this region's nucleotide sequence