Strain Fitness in Shewanella amazonensis SB2B around Sama_3550

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
4,181,342	+				+1.3
4,181,342	+				-1.1
4,181,342	+				-0.7
4,181,342	+				+1.0
4,181,342	+				+0.2
4,181,343	-				-1.0
4,181,343	-				+0.5
4,181,351	+				-0.6
4,181,352	-				+1.0
4,181,352	-				-0.3
4,181,353	+				+1.1
4,181,353	+				-1.0
4,181,353	+				+1.2
4,181,353	+				-0.7
4,181,353	+				+0.0
4,181,354	-				-0.4
4,181,354	-				-0.5
4,181,354	-				-0.5
4,181,368	+				-0.1
4,181,368	+				-0.4
4,181,368	+				-2.8
4,181,368	+				-0.6
4,181,369	-				+1.0
4,181,369	-				-2.0
4,181,369	-				+1.0
4,181,369	-				+0.2
4,181,385	+		Sama_3549	0.12	-0.2
4,181,386	-		Sama_3549	0.12	-0.8
4,181,392	+		Sama_3549	0.12	+0.7
4,181,392	+		Sama_3549	0.12	-0.7
4,181,393	-		Sama_3549	0.13	+2.7
4,181,457	+		Sama_3549	0.20	+0.8
4,181,458	-		Sama_3549	0.20	+1.9
4,181,458	-		Sama_3549	0.20	+2.4
4,181,504	+		Sama_3549	0.25	-0.4
4,181,504	+		Sama_3549	0.25	-1.4
4,181,505	-		Sama_3549	0.25	-0.2
4,181,505	-		Sama_3549	0.25	-0.5
4,181,505	-		Sama_3549	0.25	-0.5
4,181,519	+		Sama_3549	0.27	-0.1
4,181,520	-		Sama_3549	0.27	-0.5
4,181,622	+		Sama_3549	0.38	-0.6
4,181,622	+		Sama_3549	0.38	+1.1
4,181,622	+		Sama_3549	0.38	-0.4
4,181,622	+		Sama_3549	0.38	-0.2
4,181,622	+		Sama_3549	0.38	+0.8
4,181,622	+		Sama_3549	0.38	-0.2
4,181,623	-		Sama_3549	0.38	+0.9
4,181,623	-		Sama_3549	0.38	-0.2
4,181,623	-		Sama_3549	0.38	-1.4
4,181,623	-		Sama_3549	0.38	-0.2
4,181,623	-		Sama_3549	0.38	-1.3
4,181,623	-		Sama_3549	0.38	+0.6
4,181,662	+		Sama_3549	0.42	-0.5
4,181,662	+		Sama_3549	0.42	-0.3
4,181,662	+		Sama_3549	0.42	-2.9
4,181,662	+		Sama_3549	0.42	-1.1
4,181,662	+		Sama_3549	0.42	-0.7
4,181,662	+		Sama_3549	0.42	-1.3
4,181,663	-		Sama_3549	0.43	+1.3
4,181,663	-		Sama_3549	0.43	-0.6
4,181,663	-		Sama_3549	0.43	+0.3
4,181,663	-		Sama_3549	0.43	-0.4
4,181,705	+		Sama_3549	0.47	-2.9
4,181,706	-		Sama_3549	0.47	+1.0
4,181,706	-		Sama_3549	0.47	+0.2
4,181,745	+		Sama_3549	0.52	-0.2
4,181,745	+		Sama_3549	0.52	+0.2
4,181,745	+		Sama_3549	0.52	-0.0
4,181,745	+		Sama_3549	0.52	+0.5
4,181,746	-		Sama_3549	0.52	-0.7
4,181,746	-		Sama_3549	0.52	-0.3
4,181,746	-		Sama_3549	0.52	+0.2
4,181,858	+		Sama_3549	0.64	-1.8
4,181,858	+		Sama_3549	0.64	-1.5
4,181,858	+		Sama_3549	0.64	-0.1
4,181,858	+		Sama_3549	0.64	-0.1
4,181,859	-		Sama_3549	0.64	+0.7
4,181,859	-		Sama_3549	0.64	-0.2
4,181,859	-		Sama_3549	0.64	-0.7
4,181,859	-		Sama_3549	0.64	+0.1
4,181,859	-		Sama_3549	0.64	-0.5
4,181,859	-		Sama_3549	0.64	-0.7
4,181,859	-		Sama_3549	0.64	-1.5
4,181,859	-		Sama_3549	0.64	-1.0
4,181,859	-		Sama_3549	0.64	+0.4
4,181,958	+		Sama_3549	0.75	+0.1
4,181,958	+		Sama_3549	0.75	-0.3
4,181,958	+		Sama_3549	0.75	-0.7
4,181,958	+		Sama_3549	0.75	+3.6
4,181,958	+		Sama_3549	0.75	-0.5
4,181,958	+		Sama_3549	0.75	-0.8
4,181,959	-		Sama_3549	0.75	-1.6
4,181,959	-		Sama_3549	0.75	-1.4
4,181,971	+		Sama_3549	0.77	-0.2
4,182,008	+		Sama_3549	0.81	+0.0
4,182,132	+				+3.5
4,182,132	+				-1.0
4,182,133	-				-3.3
4,182,133	-				+1.2
4,182,160	+				-0.6
4,182,160	+				+0.3
4,182,195	-				-0.6
4,182,195	-				-1.1
4,182,205	+				-0.3
4,182,206	-				+0.2
4,182,214	+				-1.4
4,182,214	+				-1.4
4,182,214	+				+1.5
4,182,215	-				+0.0
4,182,215	-				+0.8
4,182,216	+				+0.4
4,182,216	+				-0.0
4,182,216	+				-0.1
4,182,216	+				+0.5
4,182,216	+				+2.1
4,182,216	+				+0.0
4,182,216	+				+0.5
4,182,216	+				-0.7
4,182,216	+				+0.5
4,182,216	+				+3.7
4,182,217	-				+0.9
4,182,217	-				-0.5
4,182,217	-				-0.1
4,182,217	-				-0.5
4,182,217	-				+0.2
4,182,220	+				-1.2
4,182,220	+				-0.3
4,182,220	+				+1.9
4,182,220	+				+1.0
4,182,220	+				-1.7
4,182,221	-				+1.1
4,182,221	-				+0.3
4,182,221	-				+2.3
4,182,221	-				+0.6
4,182,221	-				-0.4
4,182,254	-				-0.6
4,182,273	+				-1.0
4,182,273	+				-1.7
4,182,273	+				-1.2
4,182,273	+				-0.3
4,182,273	+				+0.8
4,182,273	+				+0.4
4,182,273	+				+0.3
4,182,273	+				-0.5
4,182,274	-				-0.0
4,182,274	-				-0.9
4,182,287	+				-1.9
4,182,287	+				+0.5
4,182,287	+				+0.1
4,182,288	-				-0.4
4,182,288	-				+0.9
4,182,305	+				+0.4
4,182,337	-				-0.2
4,182,377	+				+0.3
4,182,442	+		Sama_3550	0.17	+1.4
4,182,443	-		Sama_3550	0.17	+1.5
4,182,491	+		Sama_3550	0.23	-0.7
4,182,492	-		Sama_3550	0.23	-1.0
4,182,498	+		Sama_3550	0.24	+0.2
4,182,498	+		Sama_3550	0.24	-0.1
4,182,499	-		Sama_3550	0.24	-1.2
4,182,499	-		Sama_3550	0.24	-0.5
4,182,499	-		Sama_3550	0.24	-1.2
4,182,507	+		Sama_3550	0.25	+0.9
4,182,523	-		Sama_3550	0.27	+0.9
4,182,523	-		Sama_3550	0.27	-0.9
4,182,523	-		Sama_3550	0.27	+1.1
4,182,587	+		Sama_3550	0.34	+1.8
4,182,587	+		Sama_3550	0.34	-0.5
4,182,587	+		Sama_3550	0.34	+0.3
4,182,587	+		Sama_3550	0.34	+0.5
4,182,588	-		Sama_3550	0.34	+0.7
4,182,588	-		Sama_3550	0.34	-0.0
4,182,588	-		Sama_3550	0.34	-0.4
4,182,588	-		Sama_3550	0.34	+0.3
4,182,588	-		Sama_3550	0.34	-0.1
4,182,588	-		Sama_3550	0.34	-0.0
4,182,589	+		Sama_3550	0.34	-0.1
4,182,589	+		Sama_3550	0.34	+2.2
4,182,589	+		Sama_3550	0.34	+2.6
4,182,589	+		Sama_3550	0.34	-0.9
4,182,589	+		Sama_3550	0.34	-1.2
4,182,589	+		Sama_3550	0.34	+0.8
4,182,589	+		Sama_3550	0.34	-1.1
4,182,589	+		Sama_3550	0.34	-1.5
4,182,589	+		Sama_3550	0.34	+0.2
4,182,590	-		Sama_3550	0.35	+0.5
4,182,590	-		Sama_3550	0.35	+0.2
4,182,590	-		Sama_3550	0.35	+0.7
4,182,590	-		Sama_3550	0.35	-1.2
4,182,590	-		Sama_3550	0.35	+0.2
4,182,590	-		Sama_3550	0.35	+0.6
4,182,709	+		Sama_3550	0.48	-0.3
4,182,710	-		Sama_3550	0.49	-1.2
4,182,758	+		Sama_3550	0.54	-0.9
4,182,758	+		Sama_3550	0.54	-0.8
4,182,758	+		Sama_3550	0.54	+4.0
4,182,759	-		Sama_3550	0.54	+0.3
4,182,759	-		Sama_3550	0.54	+0.9
4,182,833	+		Sama_3550	0.63	-0.2
4,182,834	-		Sama_3550	0.63	-0.2
4,182,865	+		Sama_3550	0.67	-1.1
4,182,866	-		Sama_3550	0.67	+2.3
4,182,866	-		Sama_3550	0.67	-0.8
4,182,866	-		Sama_3550	0.67	+0.1
4,182,895	+		Sama_3550	0.70	-0.0
4,182,895	+		Sama_3550	0.70	-1.7
4,182,896	-		Sama_3550	0.70	-0.3
4,182,933	+		Sama_3550	0.75	+0.0
4,182,990	+		Sama_3550	0.81	+2.9
4,182,990	+		Sama_3550	0.81	-1.1
4,182,998	+		Sama_3550	0.82	-1.6
4,183,057	+		Sama_3550	0.89	-0.2
4,183,057	+		Sama_3550	0.89	+0.3
4,183,057	+		Sama_3550	0.89	-0.2
4,183,058	-		Sama_3550	0.89	-1.7
4,183,058	-		Sama_3550	0.89	+0.5
4,183,058	-		Sama_3550	0.89	+0.3
4,183,058	-		Sama_3550	0.89	-0.8
4,183,058	-		Sama_3550	0.89	+0.8
4,183,058	-		Sama_3550	0.89	-0.3
4,183,058	-		Sama_3550	0.89	-0.1
4,183,062	+		Sama_3550	0.90	-0.5
4,183,062	+		Sama_3550	0.90	+0.1
4,183,063	-		Sama_3550	0.90	-0.5
4,183,063	-		Sama_3550	0.90	+0.3
4,183,079	+				+0.6
4,183,080	-				-1.5
4,183,159	+				+0.4
4,183,160	-				+0.6
4,183,160	-				-1.0
4,183,160	-				-1.1
4,183,160	-				-1.4
4,183,160	-				-0.7
4,183,160	-				+0.1
4,183,160	-				-0.5
4,183,160	-				-0.0
4,183,219	+				+0.5
4,183,220	-				+0.8
4,183,220	-				+0.2
4,183,223	+				-0.8
4,183,223	+				+0.1
4,183,223	+				+0.1
4,183,224	-				-0.4
4,183,224	-				+0.1
4,183,224	-				+0.9
4,183,224	-				+2.5
4,183,310	+		Sama_3551	0.17	-2.5
4,183,311	-		Sama_3551	0.17	+0.2
4,183,311	-		Sama_3551	0.17	-0.1
4,183,311	-		Sama_3551	0.17	-1.0
4,183,311	-		Sama_3551	0.17	-0.3
4,183,350	+		Sama_3551	0.22	+1.1
4,183,350	+		Sama_3551	0.22	-1.7
4,183,351	-		Sama_3551	0.23	-0.6
4,183,351	-		Sama_3551	0.23	+0.5
4,183,377	+		Sama_3551	0.26	+0.5
4,183,377	+		Sama_3551	0.26	+2.8
4,183,377	+		Sama_3551	0.26	+1.0
4,183,377	+		Sama_3551	0.26	-0.7
4,183,377	+		Sama_3551	0.26	+1.5
4,183,377	+		Sama_3551	0.26	-0.9
4,183,377	+		Sama_3551	0.26	-1.6
4,183,377	+		Sama_3551	0.26	+0.7
4,183,378	-		Sama_3551	0.26	-0.9
4,183,378	-		Sama_3551	0.26	-0.5
4,183,378	-		Sama_3551	0.26	-0.3
4,183,378	-		Sama_3551	0.26	+0.1
4,183,378	-		Sama_3551	0.26	-0.7
4,183,378	-		Sama_3551	0.26	+0.9
4,183,378	-		Sama_3551	0.26	+0.4
4,183,380	+		Sama_3551	0.27	-0.8
4,183,380	+		Sama_3551	0.27	+0.5
4,183,380	+		Sama_3551	0.27	-0.6
4,183,380	+		Sama_3551	0.27	-0.7
4,183,380	+		Sama_3551	0.27	-0.6
4,183,380	+		Sama_3551	0.27	-0.8
4,183,380	+		Sama_3551	0.27	+0.0
4,183,380	+		Sama_3551	0.27	+1.5
4,183,380	+		Sama_3551	0.27	-1.0
4,183,380	+		Sama_3551	0.27	+1.2
4,183,380	+		Sama_3551	0.27	+0.2
4,183,380	+		Sama_3551	0.27	-0.5
4,183,380	+		Sama_3551	0.27	-0.2
4,183,380	+		Sama_3551	0.27	-0.2
4,183,380	+		Sama_3551	0.27	-0.3
4,183,381	-		Sama_3551	0.27	+2.8
4,183,381	-		Sama_3551	0.27	-0.1
4,183,381	-		Sama_3551	0.27	-0.7
4,183,381	-		Sama_3551	0.27	+0.1
4,183,381	-		Sama_3551	0.27	-0.5
4,183,381	-		Sama_3551	0.27	+2.9
4,183,381	-		Sama_3551	0.27	-0.4
4,183,381	-		Sama_3551	0.27	-0.2
4,183,381	-		Sama_3551	0.27	-0.9
4,183,381	-		Sama_3551	0.27	-0.7
4,183,381	-		Sama_3551	0.27	-0.1
4,183,381	-		Sama_3551	0.27	+0.6
4,183,381	-		Sama_3551	0.27	-0.2
4,183,381	-		Sama_3551	0.27	-1.3
4,183,400	+		Sama_3551	0.30	-0.3
4,183,401	-		Sama_3551	0.30	-2.3
4,183,401	-		Sama_3551	0.30	-0.0
4,183,401	-		Sama_3551	0.30	-1.5
4,183,521	-		Sama_3551	0.47	+0.9
4,183,521	-		Sama_3551	0.47	-1.5
4,183,539	+		Sama_3551	0.50	+1.1
4,183,539	+		Sama_3551	0.50	-0.4
4,183,540	-		Sama_3551	0.50	-1.6
4,183,577	+		Sama_3551	0.55	+1.1
4,183,577	+		Sama_3551	0.55	-0.5
4,183,577	+		Sama_3551	0.55	+0.4
4,183,577	+		Sama_3551	0.55	-1.1
4,183,578	-		Sama_3551	0.56	+0.3
4,183,578	-		Sama_3551	0.56	-0.7
4,183,578	-		Sama_3551	0.56	-0.5
4,183,578	-		Sama_3551	0.56	-2.1
4,183,578	-		Sama_3551	0.56	-0.0
4,183,579	+		Sama_3551	0.56	-0.8
4,183,580	-		Sama_3551	0.56	-0.8
4,183,657	+		Sama_3551	0.67	+0.4
4,183,657	+		Sama_3551	0.67	-0.5
4,183,657	+		Sama_3551	0.67	+0.7
4,183,657	+		Sama_3551	0.67	+0.0
4,183,658	-		Sama_3551	0.67	-0.4
4,183,658	-		Sama_3551	0.67	+0.5
4,183,667	+		Sama_3551	0.69	+2.8
4,183,667	+		Sama_3551	0.69	-0.4
4,183,668	-		Sama_3551	0.69	-0.7
4,183,668	-		Sama_3551	0.69	-2.4
4,183,668	-		Sama_3551	0.69	+1.7
4,183,668	-		Sama_3551	0.69	-1.4
4,183,668	-		Sama_3551	0.69	+0.5
4,183,668	-		Sama_3551	0.69	-2.5
4,183,668	-		Sama_3551	0.69	-1.2
4,183,724	+		Sama_3551	0.77	+0.6
4,183,724	+		Sama_3551	0.77	-0.7
4,183,724	+		Sama_3551	0.77	-0.7
4,183,724	+		Sama_3551	0.77	+0.9
4,183,724	+		Sama_3551	0.77	-0.3
4,183,725	-		Sama_3551	0.77	-0.6
4,183,725	-		Sama_3551	0.77	+1.7
4,183,725	-		Sama_3551	0.77	-2.7
4,183,725	-		Sama_3551	0.77	+0.0
4,183,725	-		Sama_3551	0.77	+1.6
4,183,725	-		Sama_3551	0.77	+0.0
4,183,725	-		Sama_3551	0.77	+0.5
4,183,725	-		Sama_3551	0.77	-0.6
4,183,849	+				+0.1
4,183,849	+				+1.3
4,183,850	-				+0.2
4,183,850	-				-1.5
4,183,850	-				+1.5
4,183,850	-				-0.7
4,183,880	+				+1.8
4,183,881	-				+1.6
4,183,881	-				+0.9
4,183,881	-				-0.9
4,183,940	+				-0.4
4,183,940	+				-0.6
4,183,941	-				-0.8
4,183,941	-				-1.0
4,183,941	-				-0.2
4,183,961	-		Sama_3552	0.11	-0.4
4,183,965	+		Sama_3552	0.12	+2.1
4,183,966	-		Sama_3552	0.12	+1.8
4,183,966	-		Sama_3552	0.12	+1.7
4,183,966	-		Sama_3552	0.12	-0.5
4,183,966	-		Sama_3552	0.12	+1.9
4,183,966	-		Sama_3552	0.12	-1.5
4,183,969	-		Sama_3552	0.12	-0.4
4,183,976	+		Sama_3552	0.13	-1.3
4,183,976	+		Sama_3552	0.13	-0.7
4,183,977	-		Sama_3552	0.13	+0.2
4,183,977	-		Sama_3552	0.13	-0.6
4,183,977	-		Sama_3552	0.13	-0.7
4,183,992	+		Sama_3552	0.15	+0.1
4,183,992	+		Sama_3552	0.15	-0.3
4,183,992	+		Sama_3552	0.15	-1.7
4,183,992	+		Sama_3552	0.15	-1.2
4,183,992	+		Sama_3552	0.15	+0.1
4,183,992	+		Sama_3552	0.15	+1.1
4,183,993	-		Sama_3552	0.16	-1.7
4,183,993	-		Sama_3552	0.16	+0.3
4,183,993	-		Sama_3552	0.16	+2.0
4,183,993	-		Sama_3552	0.16	-0.9
4,183,993	-		Sama_3552	0.16	-1.3
4,183,993	-		Sama_3552	0.16	-0.5
4,183,993	-		Sama_3552	0.16	-0.7
4,183,994	+		Sama_3552	0.16	-0.0
4,183,994	+		Sama_3552	0.16	-1.1
4,183,994	+		Sama_3552	0.16	-0.4
4,183,994	+		Sama_3552	0.16	-0.5
4,183,994	+		Sama_3552	0.16	+0.1
4,183,995	-		Sama_3552	0.16	-1.9
4,183,995	-		Sama_3552	0.16	-0.1
4,183,995	-		Sama_3552	0.16	+0.1
4,183,995	-		Sama_3552	0.16	+2.7
4,184,014	+		Sama_3552	0.18	-0.4
4,184,014	+		Sama_3552	0.18	+0.3
4,184,015	-		Sama_3552	0.19	-0.1
4,184,015	-		Sama_3552	0.19	+0.6
4,184,070	-		Sama_3552	0.26	+0.2
4,184,111	+		Sama_3552	0.32	-0.7
4,184,111	+		Sama_3552	0.32	-0.2
4,184,111	+		Sama_3552	0.32	+0.6
4,184,111	+		Sama_3552	0.32	-1.2
4,184,111	+		Sama_3552	0.32	-1.7
4,184,111	+		Sama_3552	0.32	+0.4
4,184,112	-		Sama_3552	0.32	+0.3
4,184,112	-		Sama_3552	0.32	-0.5
4,184,112	-		Sama_3552	0.32	+1.7
4,184,112	-		Sama_3552	0.32	-1.1
4,184,112	-		Sama_3552	0.32	+1.0
4,184,112	-		Sama_3552	0.32	+0.9
4,184,129	+		Sama_3552	0.34	-0.4
4,184,129	+		Sama_3552	0.34	+0.1
4,184,130	-		Sama_3552	0.34	-2.6
4,184,130	-		Sama_3552	0.34	-0.9
4,184,130	-		Sama_3552	0.34	+0.9
4,184,130	-		Sama_3552	0.34	+0.9
4,184,130	-		Sama_3552	0.34	+0.2
4,184,130	-		Sama_3552	0.34	-0.2
4,184,130	-		Sama_3552	0.34	-1.1
4,184,130	-		Sama_3552	0.34	+1.2
4,184,130	-		Sama_3552	0.34	-0.3
4,184,130	-		Sama_3552	0.34	-0.6
4,184,130	-		Sama_3552	0.34	-0.4