Strain Fitness in Shewanella amazonensis SB2B around Sama_2842

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,382,183	+				-2.3
3,382,183	+				-0.6
3,382,184	-				-1.0
3,382,184	-				-1.3
3,382,184	-				-1.5
3,382,184	-				-1.7
3,382,329	+				+0.9
3,382,329	+				-0.4
3,382,330	-				+0.9
3,382,344	+				+0.3
3,382,344	+				+1.4
3,382,349	+				-1.4
3,382,350	-				-0.1
3,382,363	-				-0.7
3,382,503	+				-0.1
3,382,504	-				-1.8
3,382,524	+				-0.6
3,382,524	+				+0.3
3,382,525	-				-1.5
3,382,525	-				-0.2
3,382,525	-				-0.3
3,382,537	+				-0.5
3,382,538	-				-1.3
3,382,538	-				-0.5
3,382,590	+				+1.1
3,382,590	+				+0.9
3,382,590	+				-0.5
3,382,590	+				+0.7
3,382,590	+				-0.3
3,382,591	-				+0.1
3,382,591	-				+0.7
3,382,591	-				+0.2
3,382,591	-				-1.1
3,382,669	+				-0.0
3,382,670	-				-1.2
3,382,728	-				-1.6
3,382,777	+				+0.2
3,382,778	-				-1.1
3,382,778	-				+0.1
3,382,778	-				+1.4
3,382,789	+				-1.3
3,382,790	-				+1.8
3,382,796	+				+2.0
3,382,796	+				+1.1
3,382,797	-				-1.5
3,382,797	-				-0.9
3,382,797	-				+1.0
3,382,797	-				-1.2
3,382,797	-				-0.6
3,382,797	-				+1.2
3,382,797	-				-0.9
3,382,797	-				-0.2
3,382,797	-				+1.5
3,382,797	-				-0.8
3,382,797	-				-0.6
3,382,797	-				-1.2
3,382,797	-				-0.6
3,382,797	-				-1.5
3,382,807	+				+1.2
3,382,807	+				+0.2
3,382,807	+				-1.9
3,382,807	+				+0.3
3,382,807	+				-1.0
3,382,807	+				+2.6
3,382,807	+				-0.1
3,382,808	-				-1.7
3,382,808	-				-0.0
3,382,808	-				-0.3
3,382,808	-				+1.8
3,382,808	-				+0.0
3,382,808	-				+0.2
3,382,808	-				-1.3
3,382,809	+				-1.5
3,382,809	+				+0.0
3,382,810	-				+1.1
3,382,810	-				+0.2
3,382,810	-				-0.6
3,382,810	-				-0.7
3,382,810	-				+0.7
3,382,810	-				-0.6
3,382,814	+				-1.5
3,382,814	+				+1.0
3,382,814	+				-0.4
3,382,814	+				-1.4
3,382,814	+				-0.5
3,382,814	+				+0.3
3,382,815	-				+0.2
3,382,815	-				+1.9
3,382,815	-				+0.2
3,382,815	-				-0.5
3,382,815	-				-0.8
3,382,815	-				-1.2
3,382,815	-				+0.5
3,382,815	-				+0.1
3,382,815	-				+0.2
3,382,816	+				-1.4
3,382,817	-				-0.5
3,382,817	-				+0.1
3,382,933	-				+0.7
3,383,043	-				-0.9
3,383,086	-				-0.2
3,383,086	-				+0.6
3,383,086	-				+1.0
3,383,087	+				-0.4
3,383,087	+				+0.1
3,383,087	+				+2.4
3,383,088	-				-0.2
3,383,088	-				+0.2
3,383,088	-				-0.4
3,383,088	-				+0.5
3,383,088	-				-1.3
3,383,088	-				+0.9
3,383,097	-				-1.0
3,383,135	+				+0.0
3,383,135	+				-0.6
3,383,136	-				-0.5
3,383,136	-				+0.3
3,383,136	-				-0.1
3,383,136	-				+0.5
3,383,136	-				-0.2
3,383,138	+				-0.8
3,383,138	+				+1.2
3,383,138	+				+1.6
3,383,138	+				-1.5
3,383,139	-				+1.4
3,383,139	-				-0.3
3,383,142	+				-1.0
3,383,142	+				-0.2
3,383,152	+		Sama_2842	0.10	-0.5
3,383,152	+		Sama_2842	0.10	-0.6
3,383,152	+		Sama_2842	0.10	-1.0
3,383,153	-		Sama_2842	0.11	-1.2
3,383,153	-		Sama_2842	0.11	-0.4
3,383,153	-		Sama_2842	0.11	-0.1
3,383,153	-		Sama_2842	0.11	-1.6
3,383,163	+		Sama_2842	0.13	+0.9
3,383,163	+		Sama_2842	0.13	-0.5
3,383,164	-		Sama_2842	0.13	+0.3
3,383,167	-		Sama_2842	0.14	+0.6
3,383,167	-		Sama_2842	0.14	-3.0
3,383,167	-		Sama_2842	0.14	+1.3
3,383,167	-		Sama_2842	0.14	-0.1
3,383,193	+		Sama_2842	0.20	-0.7
3,383,194	-		Sama_2842	0.20	-0.3
3,383,199	+		Sama_2842	0.21	+0.1
3,383,199	+		Sama_2842	0.21	-0.3
3,383,199	+		Sama_2842	0.21	-0.1
3,383,239	-		Sama_2842	0.30	-0.5
3,383,239	-		Sama_2842	0.30	+0.7
3,383,254	+		Sama_2842	0.34	-0.3
3,383,281	+		Sama_2842	0.40	-0.5
3,383,291	-		Sama_2842	0.42	+1.8
3,383,292	+		Sama_2842	0.42	+0.2
3,383,293	-		Sama_2842	0.42	+0.4
3,383,299	-		Sama_2842	0.44	-2.1
3,383,299	-		Sama_2842	0.44	+0.5
3,383,304	-		Sama_2842	0.45	-0.3
3,383,304	-		Sama_2842	0.45	+1.0
3,383,304	-		Sama_2842	0.45	-1.1
3,383,304	-		Sama_2842	0.45	-1.0
3,383,304	-		Sama_2842	0.45	-0.1
3,383,305	+		Sama_2842	0.45	-0.2
3,383,305	+		Sama_2842	0.45	+0.2
3,383,306	-		Sama_2842	0.45	+0.8
3,383,306	-		Sama_2842	0.45	-1.5
3,383,306	-		Sama_2842	0.45	+0.7
3,383,355	-		Sama_2842	0.57	+0.3
3,383,395	+		Sama_2842	0.66	-1.8
3,383,396	-		Sama_2842	0.66	-0.2
3,383,403	+		Sama_2842	0.68	-0.8
3,383,403	+		Sama_2842	0.68	+0.2
3,383,419	-		Sama_2842	0.71	+0.4
3,383,437	-		Sama_2842	0.75	+0.1
3,383,439	+		Sama_2842	0.76	-0.5
3,383,439	+		Sama_2842	0.76	-0.4
3,383,439	+		Sama_2842	0.76	+0.5
3,383,439	+		Sama_2842	0.76	+0.2
3,383,439	+		Sama_2842	0.76	-1.3
3,383,439	+		Sama_2842	0.76	+1.0
3,383,439	+		Sama_2842	0.76	+2.0
3,383,439	+		Sama_2842	0.76	-0.0
3,383,439	+		Sama_2842	0.76	+0.3
3,383,440	-		Sama_2842	0.76	-0.4
3,383,442	+		Sama_2842	0.76	-0.5
3,383,444	+		Sama_2842	0.77	-0.7
3,383,445	-		Sama_2842	0.77	+0.7
3,383,450	+		Sama_2842	0.78	-1.5
3,383,463	+		Sama_2842	0.81	-1.0
3,383,463	+		Sama_2842	0.81	-0.8
3,383,463	+		Sama_2842	0.81	-1.0
3,383,464	-		Sama_2842	0.82	+0.1
3,383,467	+		Sama_2842	0.82	+0.9
3,383,467	+		Sama_2842	0.82	-1.8
3,383,467	+		Sama_2842	0.82	-1.0
3,383,468	-		Sama_2842	0.82	-1.0
3,383,492	+		Sama_2842	0.88	-0.4
3,383,514	+				+0.7
3,383,514	+				+0.2
3,383,542	+				+1.6
3,383,543	-				-0.5
3,383,592	+				-1.8
3,383,593	-				+0.2
3,383,603	+				-0.9
3,383,604	-				-0.4
3,383,647	+		Sama_2843	0.14	-0.5
3,383,647	+		Sama_2843	0.14	+1.6
3,383,648	-		Sama_2843	0.14	-0.4
3,383,648	-		Sama_2843	0.14	-1.5
3,383,648	-		Sama_2843	0.14	+0.7
3,383,648	-		Sama_2843	0.14	-0.2
3,383,648	-		Sama_2843	0.14	-1.2
3,383,663	+		Sama_2843	0.19	+0.4
3,383,663	+		Sama_2843	0.19	-0.6
3,383,663	+		Sama_2843	0.19	+2.4
3,383,663	+		Sama_2843	0.19	-0.6
3,383,663	+		Sama_2843	0.19	-0.4
3,383,663	+		Sama_2843	0.19	-0.5
3,383,664	-		Sama_2843	0.19	+0.4
3,383,664	-		Sama_2843	0.19	-1.0
3,383,664	-		Sama_2843	0.19	+0.4
3,383,664	-		Sama_2843	0.19	-0.8
3,383,664	-		Sama_2843	0.19	-2.8
3,383,664	-		Sama_2843	0.19	-0.2
3,383,664	-		Sama_2843	0.19	-0.3
3,383,665	+		Sama_2843	0.20	+2.2
3,383,665	+		Sama_2843	0.20	+0.4
3,383,665	+		Sama_2843	0.20	-0.1
3,383,665	+		Sama_2843	0.20	-1.3
3,383,665	+		Sama_2843	0.20	+2.9
3,383,665	+		Sama_2843	0.20	-0.5
3,383,665	+		Sama_2843	0.20	+0.7
3,383,666	-		Sama_2843	0.20	-0.5
3,383,666	-		Sama_2843	0.20	-0.4
3,383,666	-		Sama_2843	0.20	+0.7
3,383,666	-		Sama_2843	0.20	+0.3
3,383,666	-		Sama_2843	0.20	+0.2
3,383,666	-		Sama_2843	0.20	+3.1
3,383,666	-		Sama_2843	0.20	+0.2
3,383,666	-		Sama_2843	0.20	-3.0
3,383,666	-		Sama_2843	0.20	+1.7
3,383,666	-		Sama_2843	0.20	-0.6
3,383,672	-		Sama_2843	0.22	+0.4
3,383,689	+		Sama_2843	0.28	+0.2
3,383,689	+		Sama_2843	0.28	+0.4
3,383,689	+		Sama_2843	0.28	-0.5
3,383,689	+		Sama_2843	0.28	-0.1
3,383,689	+		Sama_2843	0.28	-0.3
3,383,689	+		Sama_2843	0.28	+0.4
3,383,690	-		Sama_2843	0.28	-0.2
3,383,690	-		Sama_2843	0.28	-0.3
3,383,690	-		Sama_2843	0.28	-0.0
3,383,696	-		Sama_2843	0.30	+0.4
3,383,696	-		Sama_2843	0.30	-0.3
3,383,700	+		Sama_2843	0.31	-0.9
3,383,701	-		Sama_2843	0.31	+0.4
3,383,701	-		Sama_2843	0.31	+1.5
3,383,701	-		Sama_2843	0.31	-0.5
3,383,721	+		Sama_2843	0.38	+0.8
3,383,721	+		Sama_2843	0.38	-0.1
3,383,721	+		Sama_2843	0.38	+0.7
3,383,721	+		Sama_2843	0.38	+0.7
3,383,728	+		Sama_2843	0.40	+0.4
3,383,728	+		Sama_2843	0.40	+0.2
3,383,729	-		Sama_2843	0.40	+0.1
3,383,729	-		Sama_2843	0.40	-1.6
3,383,729	-		Sama_2843	0.40	-0.8
3,383,764	+		Sama_2843	0.52	+3.1
3,383,765	-		Sama_2843	0.52	-0.0
3,383,839	+		Sama_2843	0.76	+0.0
3,383,839	+		Sama_2843	0.76	+0.3
3,383,839	+		Sama_2843	0.76	-0.7
3,383,839	+		Sama_2843	0.76	+0.7
3,383,840	-		Sama_2843	0.76	+1.2
3,383,840	-		Sama_2843	0.76	+0.5
3,383,854	+		Sama_2843	0.81	-0.7
3,383,855	+		Sama_2843	0.81	-0.4
3,383,870	-		Sama_2843	0.86	-1.4
3,383,910	+				-1.0
3,383,910	+				+0.0
3,383,910	+				-0.9
3,383,911	-				+0.5
3,383,911	-				+0.8
3,383,985	-				-0.5
3,384,006	-				-0.9
3,384,060	+		Sama_2844	0.13	-1.0
3,384,060	+		Sama_2844	0.13	+0.4
3,384,060	+		Sama_2844	0.13	+1.5
3,384,066	+		Sama_2844	0.14	-0.3
3,384,067	-		Sama_2844	0.14	+0.2
3,384,222	+		Sama_2844	0.52	-0.5
3,384,319	-		Sama_2844	0.76	-1.2
3,384,338	+		Sama_2844	0.81	-0.2
3,384,413	+				+0.0
3,384,511	+				-1.2
3,384,527	-				-2.1
3,384,527	-				+2.1