Strain Fitness in Shewanella amazonensis SB2B around Sama_2729

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,262,985	+		Sama_2728	0.30	-0.6
3,262,985	+		Sama_2728	0.30	-0.5
3,262,985	+		Sama_2728	0.30	+2.2
3,262,986	-		Sama_2728	0.30	+0.2
3,262,986	-		Sama_2728	0.30	-1.4
3,262,986	-		Sama_2728	0.30	-0.3
3,262,988	+		Sama_2728	0.30	-0.3
3,262,989	-		Sama_2728	0.30	-0.1
3,262,989	-		Sama_2728	0.30	-2.1
3,262,989	-		Sama_2728	0.30	-2.7
3,263,013	+		Sama_2728	0.32	-1.3
3,263,013	+		Sama_2728	0.32	-0.6
3,263,013	+		Sama_2728	0.32	+0.2
3,263,013	+		Sama_2728	0.32	+2.3
3,263,013	+		Sama_2728	0.32	+0.1
3,263,014	-		Sama_2728	0.32	+0.2
3,263,106	+		Sama_2728	0.40	-0.6
3,263,106	+		Sama_2728	0.40	-1.1
3,263,117	+		Sama_2728	0.41	-1.2
3,263,118	-		Sama_2728	0.41	+0.3
3,263,118	-		Sama_2728	0.41	-1.5
3,263,118	-		Sama_2728	0.41	+0.1
3,263,118	-		Sama_2728	0.41	+0.0
3,263,118	-		Sama_2728	0.41	-0.8
3,263,147	+		Sama_2728	0.43	-1.6
3,263,147	+		Sama_2728	0.43	-0.7
3,263,147	+		Sama_2728	0.43	-0.4
3,263,147	+		Sama_2728	0.43	-0.2
3,263,147	+		Sama_2728	0.43	+0.0
3,263,148	-		Sama_2728	0.43	-0.6
3,263,148	-		Sama_2728	0.43	+1.2
3,263,148	-		Sama_2728	0.43	+0.9
3,263,148	-		Sama_2728	0.43	+0.2
3,263,148	-		Sama_2728	0.43	+0.2
3,263,149	+		Sama_2728	0.43	-0.5
3,263,149	+		Sama_2728	0.43	-0.2
3,263,150	-		Sama_2728	0.43	-0.3
3,263,167	+		Sama_2728	0.45	+0.8
3,263,167	+		Sama_2728	0.45	+2.1
3,263,167	+		Sama_2728	0.45	-1.2
3,263,167	+		Sama_2728	0.45	-2.2
3,263,211	+		Sama_2728	0.48	+0.7
3,263,211	+		Sama_2728	0.48	-0.4
3,263,211	+		Sama_2728	0.48	+0.0
3,263,211	+		Sama_2728	0.48	+0.3
3,263,212	-		Sama_2728	0.48	+0.4
3,263,212	-		Sama_2728	0.48	+2.0
3,263,212	-		Sama_2728	0.48	+0.5
3,263,212	-		Sama_2728	0.48	+1.3
3,263,212	-		Sama_2728	0.48	-0.6
3,263,242	+		Sama_2728	0.51	+2.3
3,263,242	+		Sama_2728	0.51	+0.2
3,263,242	+		Sama_2728	0.51	-0.4
3,263,243	-		Sama_2728	0.51	+0.3
3,263,243	-		Sama_2728	0.51	+0.2
3,263,275	+		Sama_2728	0.53	+5.1
3,263,275	+		Sama_2728	0.53	-1.0
3,263,275	+		Sama_2728	0.53	+0.4
3,263,276	-		Sama_2728	0.54	+0.1
3,263,276	-		Sama_2728	0.54	-1.3
3,263,352	-		Sama_2728	0.60	-1.4
3,263,381	+		Sama_2728	0.62	-0.8
3,263,381	+		Sama_2728	0.62	+3.1
3,263,382	-		Sama_2728	0.62	-0.9
3,263,382	-		Sama_2728	0.62	-2.0
3,263,382	-		Sama_2728	0.62	-0.3
3,263,395	+		Sama_2728	0.63	-0.3
3,263,396	-		Sama_2728	0.63	-1.0
3,263,433	+		Sama_2728	0.66	-0.2
3,263,433	+		Sama_2728	0.66	-0.5
3,263,433	+		Sama_2728	0.66	+1.1
3,263,433	+		Sama_2728	0.66	-0.0
3,263,433	+		Sama_2728	0.66	-0.2
3,263,433	+		Sama_2728	0.66	+0.9
3,263,434	-		Sama_2728	0.66	-0.8
3,263,434	-		Sama_2728	0.66	+0.1
3,263,434	-		Sama_2728	0.66	-1.8
3,263,434	-		Sama_2728	0.66	-0.6
3,263,434	-		Sama_2728	0.66	+0.3
3,263,434	-		Sama_2728	0.66	+0.1
3,263,434	-		Sama_2728	0.66	-2.0
3,263,434	-		Sama_2728	0.66	+0.1
3,263,434	-		Sama_2728	0.66	+0.2
3,263,434	-		Sama_2728	0.66	-1.2
3,263,434	-		Sama_2728	0.66	-0.8
3,263,435	+		Sama_2728	0.67	+2.4
3,263,435	+		Sama_2728	0.67	-1.0
3,263,435	+		Sama_2728	0.67	-1.3
3,263,435	+		Sama_2728	0.67	-0.7
3,263,435	+		Sama_2728	0.67	-0.7
3,263,435	+		Sama_2728	0.67	+0.4
3,263,435	+		Sama_2728	0.67	+1.3
3,263,435	+		Sama_2728	0.67	-0.0
3,263,435	+		Sama_2728	0.67	-0.5
3,263,435	+		Sama_2728	0.67	-1.4
3,263,435	+		Sama_2728	0.67	+0.3
3,263,435	+		Sama_2728	0.67	-1.1
3,263,435	+		Sama_2728	0.67	-1.4
3,263,435	+		Sama_2728	0.67	-2.1
3,263,435	+		Sama_2728	0.67	+0.1
3,263,435	+		Sama_2728	0.67	-0.5
3,263,435	+		Sama_2728	0.67	-0.9
3,263,435	+		Sama_2728	0.67	-0.9
3,263,435	+		Sama_2728	0.67	+0.6
3,263,435	+		Sama_2728	0.67	+0.3
3,263,435	+		Sama_2728	0.67	-0.9
3,263,435	+		Sama_2728	0.67	-1.3
3,263,435	+		Sama_2728	0.67	+0.0
3,263,435	+		Sama_2728	0.67	-1.9
3,263,435	+		Sama_2728	0.67	-1.6
3,263,435	+		Sama_2728	0.67	-0.5
3,263,435	+		Sama_2728	0.67	-1.6
3,263,436	-		Sama_2728	0.67	-0.0
3,263,436	-		Sama_2728	0.67	-0.6
3,263,436	-		Sama_2728	0.67	-0.5
3,263,436	-		Sama_2728	0.67	+0.5
3,263,436	-		Sama_2728	0.67	+0.3
3,263,436	-		Sama_2728	0.67	-2.1
3,263,436	-		Sama_2728	0.67	+1.8
3,263,436	-		Sama_2728	0.67	+0.8
3,263,436	-		Sama_2728	0.67	-0.2
3,263,436	-		Sama_2728	0.67	-1.4
3,263,436	-		Sama_2728	0.67	+2.1
3,263,436	-		Sama_2728	0.67	-1.2
3,263,436	-		Sama_2728	0.67	+2.4
3,263,436	-		Sama_2728	0.67	-1.4
3,263,436	-		Sama_2728	0.67	-0.5
3,263,436	-		Sama_2728	0.67	-1.1
3,263,436	-		Sama_2728	0.67	-0.5
3,263,436	-		Sama_2728	0.67	+3.0
3,263,436	-		Sama_2728	0.67	-0.7
3,263,436	-		Sama_2728	0.67	-0.7
3,263,436	-		Sama_2728	0.67	+0.2
3,263,436	-		Sama_2728	0.67	-1.2
3,263,475	+		Sama_2728	0.70	-0.7
3,263,475	+		Sama_2728	0.70	-0.6
3,263,475	+		Sama_2728	0.70	-1.4
3,263,475	+		Sama_2728	0.70	+0.8
3,263,476	-		Sama_2728	0.70	-1.1
3,263,476	-		Sama_2728	0.70	-0.8
3,263,512	+		Sama_2728	0.73	+0.4
3,263,513	-		Sama_2728	0.73	-0.2
3,263,513	-		Sama_2728	0.73	+0.4
3,263,513	-		Sama_2728	0.73	-0.1
3,263,542	+		Sama_2728	0.75	+1.2
3,263,543	-		Sama_2728	0.75	-3.4
3,263,543	-		Sama_2728	0.75	-0.2
3,263,579	+		Sama_2728	0.78	+0.1
3,263,579	+		Sama_2728	0.78	-0.2
3,263,579	+		Sama_2728	0.78	-1.7
3,263,580	-		Sama_2728	0.78	-1.6
3,263,580	-		Sama_2728	0.78	+1.9
3,263,580	-		Sama_2728	0.78	-0.3
3,263,580	-		Sama_2728	0.78	-0.7
3,263,580	-		Sama_2728	0.78	-1.0
3,263,591	-		Sama_2728	0.79	+1.2
3,263,623	+		Sama_2728	0.82	-0.5
3,263,624	-		Sama_2728	0.82	-1.0
3,263,624	-		Sama_2728	0.82	+2.1
3,263,624	-		Sama_2728	0.82	+0.5
3,263,629	+		Sama_2728	0.82	-0.9
3,263,676	-		Sama_2728	0.86	+0.7
3,263,693	+		Sama_2728	0.88	-1.2
3,263,694	-		Sama_2728	0.88	+1.3
3,263,696	+		Sama_2728	0.88	-1.0
3,263,696	+		Sama_2728	0.88	-0.3
3,263,696	+		Sama_2728	0.88	+0.5
3,263,697	-		Sama_2728	0.88	-0.2
3,263,722	-		Sama_2728	0.90	+1.3
3,263,722	-		Sama_2728	0.90	+0.4
3,263,793	-				+0.3
3,263,793	-				+0.2
3,263,799	+				-0.9
3,263,841	+				-0.9
3,263,843	+				+0.3
3,263,854	+				-1.2
3,263,854	+				-1.4
3,263,854	+				-0.5
3,263,854	+				-2.0
3,263,854	+				+0.2
3,263,854	+				-0.8
3,263,855	-				-0.9
3,263,855	-				-0.6
3,263,855	-				+0.2
3,263,855	-				-0.9
3,263,855	-				-0.8
3,263,855	-				-1.2
3,263,855	-				-0.9
3,263,855	-				+1.9
3,263,855	-				-0.6
3,263,855	-				-0.2
3,263,855	-				-0.4
3,263,858	+				-0.3
3,263,858	+				+0.2
3,263,858	+				-1.4
3,263,859	-				-0.4
3,263,859	-				-1.2
3,263,859	-				+1.5
3,263,859	-				+0.5
3,263,859	-				+0.2
3,263,859	-				+0.1
3,263,859	-				-0.0
3,263,859	-				-0.6
3,263,859	-				-1.1
3,263,859	-				-2.0
3,263,904	+				+0.1
3,263,904	+				-0.6
3,263,905	-				-1.2
3,263,909	+				+0.5
3,263,923	+				+1.6
3,263,923	+				+0.9
3,263,924	-				-1.8
3,263,974	-				-1.4
3,264,028	+		Sama_2729	0.18	+2.4
3,264,028	+		Sama_2729	0.18	+0.4
3,264,028	+		Sama_2729	0.18	-0.2
3,264,029	-		Sama_2729	0.18	+0.6
3,264,039	-		Sama_2729	0.20	+0.4
3,264,039	-		Sama_2729	0.20	-0.3
3,264,058	+		Sama_2729	0.24	+0.7
3,264,058	+		Sama_2729	0.24	+0.4
3,264,059	-		Sama_2729	0.24	+0.6
3,264,059	-		Sama_2729	0.24	-0.6
3,264,059	-		Sama_2729	0.24	+0.5
3,264,060	+		Sama_2729	0.24	+2.6
3,264,060	+		Sama_2729	0.24	-1.0
3,264,061	-		Sama_2729	0.25	-0.5
3,264,061	-		Sama_2729	0.25	+2.2
3,264,061	-		Sama_2729	0.25	+0.7
3,264,061	-		Sama_2729	0.25	-0.9
3,264,104	+		Sama_2729	0.34	-0.6
3,264,105	-		Sama_2729	0.34	-0.2
3,264,105	-		Sama_2729	0.34	-0.1
3,264,151	+		Sama_2729	0.44	+0.6
3,264,152	-		Sama_2729	0.44	-0.5
3,264,152	-		Sama_2729	0.44	-0.3
3,264,152	-		Sama_2729	0.44	-0.9
3,264,193	-		Sama_2729	0.53	-1.6
3,264,226	-		Sama_2729	0.60	-1.0
3,264,254	-		Sama_2729	0.66	+0.1
3,264,254	-		Sama_2729	0.66	-0.1
3,264,272	-		Sama_2729	0.70	-0.6
3,264,302	+		Sama_2729	0.77	+0.2
3,264,302	+		Sama_2729	0.77	+3.1
3,264,303	-		Sama_2729	0.77	+2.2
3,264,303	-		Sama_2729	0.77	+1.4
3,264,309	-		Sama_2729	0.78	-0.0
3,264,309	-		Sama_2729	0.78	+0.3
3,264,309	-		Sama_2729	0.78	+2.3
3,264,406	+				-1.5
3,264,410	+				-1.8
3,264,410	+				+1.1
3,264,411	-				-0.6
3,264,425	+				+0.7
3,264,475	+				-0.7
3,264,489	-				-0.4
3,264,714	+		Sama_2730	0.30	-0.5
3,264,714	+		Sama_2730	0.30	-0.3
3,264,714	+		Sama_2730	0.30	-1.2
3,264,715	-		Sama_2730	0.30	-1.1
3,264,721	+		Sama_2730	0.33	+0.0
3,264,722	-		Sama_2730	0.34	+0.2
3,264,736	+		Sama_2730	0.41	+0.7
3,264,760	+		Sama_2730	0.53	-0.9
3,264,818	+		Sama_2730	0.83	+0.3
3,264,819	-		Sama_2730	0.84	-0.9
3,264,819	-		Sama_2730	0.84	-0.1
3,264,836	-				+0.6
3,264,894	+				-0.5
3,264,895	-				-0.3
3,264,906	+				+0.3
3,264,906	+				+1.2
3,264,907	-				+0.4
3,264,907	-				-1.7
3,264,950	+				-1.5
3,264,951	-				+0.4
3,264,951	-				-0.5
3,264,951	-				-0.7
3,264,951	-				+0.4
3,264,975	+				-0.5
3,264,975	+				+0.9
3,264,975	+				-0.4
3,264,976	-				+3.1
3,264,976	-				-0.4
3,265,005	+				-1.7
3,265,005	+				-0.3
3,265,005	+				+1.6
3,265,005	+				-0.2
3,265,005	+				+0.1
3,265,005	+				+0.6
3,265,005	+				-0.8
3,265,006	-				-0.3
3,265,006	-				+1.1
3,265,006	+				-0.5
3,265,006	-				-0.6
3,265,006	-				-1.2
3,265,010	+				+2.2
3,265,010	+				-0.2
3,265,010	+				-1.0
3,265,010	+				-0.1
3,265,026	-				-0.4
3,265,046	+				+0.0
3,265,046	+				+0.5
3,265,046	+				+3.6
3,265,046	+				-0.4
3,265,046	+				-0.2
3,265,047	-				-0.8
3,265,047	-				+0.9
3,265,253	+		Sama_2731	0.26	-0.7
3,265,253	+		Sama_2731	0.26	-0.2
3,265,256	+		Sama_2731	0.26	-0.5
3,265,256	+		Sama_2731	0.26	-1.0
3,265,256	+		Sama_2731	0.26	-1.7
3,265,257	-		Sama_2731	0.26	-0.1
3,265,257	-		Sama_2731	0.26	+2.9
3,265,257	-		Sama_2731	0.26	+0.3
3,265,323	+		Sama_2731	0.35	+0.7
3,265,342	+		Sama_2731	0.37	-1.3
3,265,352	+		Sama_2731	0.38	-0.7
3,265,352	+		Sama_2731	0.38	-0.1
3,265,352	+		Sama_2731	0.38	-0.7
3,265,353	-		Sama_2731	0.39	-0.7
3,265,383	+		Sama_2731	0.42	+1.7
3,265,383	+		Sama_2731	0.42	+0.0
3,265,383	+		Sama_2731	0.42	-0.2
3,265,384	-		Sama_2731	0.43	+1.2
3,265,384	-		Sama_2731	0.43	-0.1
3,265,384	-		Sama_2731	0.43	+1.6
3,265,384	-		Sama_2731	0.43	+0.4
3,265,400	+		Sama_2731	0.45	+1.8
3,265,400	+		Sama_2731	0.45	-2.4
3,265,401	-		Sama_2731	0.45	-1.0