Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2232 and Sama_2233 are separated by 184 nucleotides Sama_2233 and Sama_2234 are separated by 136 nucleotides Sama_2234 and Sama_2235 are separated by 97 nucleotides
Sama_2232: Sama_2232 - cysQ protein (RefSeq), at 2,696,411 to 2,697,256
_2232
Sama_2233: Sama_2233 - putative hydrolase (RefSeq), at 2,697,441 to 2,698,196
_2233
Sama_2234: Sama_2234 - uncharacterized lipoprotein NlpE involved in copper resistance (RefSeq), at 2,698,333 to 2,698,941
_2234
Sama_2235: Sama_2235 - NAD dependent epimerase/dehydratase family protein (RefSeq), at 2,699,039 to 2,700,043
_2235
Position (kb)
2697
2698
2699 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2696.503 kb on - strand, within Sama_2232 at 2696.808 kb on + strand, within Sama_2232 at 2696.809 kb on - strand, within Sama_2232 at 2696.809 kb on - strand, within Sama_2232 at 2696.816 kb on - strand, within Sama_2232 at 2696.978 kb on - strand, within Sama_2232 at 2697.043 kb on + strand, within Sama_2232 at 2697.044 kb on - strand, within Sama_2232 at 2697.117 kb on + strand, within Sama_2232 at 2697.118 kb on - strand, within Sama_2232 at 2697.128 kb on + strand, within Sama_2232 at 2697.167 kb on - strand, within Sama_2232 at 2697.181 kb on + strand at 2697.182 kb on - strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.204 kb on + strand at 2697.204 kb on + strand at 2697.205 kb on - strand at 2697.205 kb on - strand at 2697.205 kb on - strand at 2697.258 kb on - strand at 2697.282 kb on + strand at 2697.316 kb on - strand at 2697.316 kb on - strand at 2697.318 kb on + strand at 2697.319 kb on - strand at 2697.501 kb on + strand at 2697.513 kb on + strand at 2697.522 kb on - strand, within Sama_2233 at 2697.534 kb on - strand, within Sama_2233 at 2697.553 kb on + strand, within Sama_2233 at 2697.784 kb on + strand, within Sama_2233 at 2697.812 kb on + strand, within Sama_2233 at 2697.813 kb on - strand, within Sama_2233 at 2697.813 kb on - strand, within Sama_2233 at 2697.817 kb on - strand, within Sama_2233 at 2697.817 kb on - strand, within Sama_2233 at 2697.817 kb on - strand, within Sama_2233 at 2697.817 kb on - strand, within Sama_2233 at 2697.817 kb on - strand, within Sama_2233 at 2697.929 kb on - strand, within Sama_2233 at 2698.009 kb on - strand, within Sama_2233 at 2698.126 kb on + strand at 2698.126 kb on + strand at 2698.127 kb on - strand at 2698.127 kb on - strand at 2698.127 kb on - strand at 2698.139 kb on + strand at 2698.140 kb on - strand at 2698.144 kb on + strand at 2698.144 kb on + strand at 2698.144 kb on + strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.145 kb on - strand at 2698.178 kb on + strand at 2698.221 kb on + strand at 2698.230 kb on - strand at 2698.230 kb on - strand at 2698.230 kb on - strand at 2698.272 kb on + strand at 2698.272 kb on + strand at 2698.272 kb on + strand at 2698.326 kb on + strand at 2698.326 kb on + strand at 2698.326 kb on + strand at 2698.326 kb on + strand at 2698.326 kb on + strand at 2698.327 kb on - strand at 2698.327 kb on - strand at 2698.338 kb on + strand at 2698.338 kb on + strand at 2698.338 kb on + strand at 2698.338 kb on + strand at 2698.338 kb on + strand at 2698.339 kb on - strand at 2698.383 kb on + strand at 2698.383 kb on + strand at 2698.452 kb on - strand, within Sama_2234 at 2698.487 kb on + strand, within Sama_2234 at 2698.624 kb on + strand, within Sama_2234 at 2698.624 kb on + strand, within Sama_2234 at 2698.624 kb on + strand, within Sama_2234 at 2698.625 kb on - strand, within Sama_2234 at 2698.660 kb on - strand, within Sama_2234 at 2698.696 kb on + strand, within Sama_2234 at 2698.697 kb on - strand, within Sama_2234 at 2698.697 kb on - strand, within Sama_2234 at 2698.697 kb on - strand, within Sama_2234 at 2698.697 kb on - strand, within Sama_2234 at 2698.697 kb on - strand, within Sama_2234 at 2698.697 kb on - strand, within Sama_2234 at 2698.822 kb on + strand, within Sama_2234 at 2698.829 kb on + strand, within Sama_2234 at 2698.830 kb on - strand, within Sama_2234 at 2698.830 kb on - strand, within Sama_2234 at 2698.848 kb on + strand, within Sama_2234 at 2698.874 kb on + strand, within Sama_2234 at 2698.898 kb on - strand at 2698.932 kb on + strand at 2698.933 kb on - strand at 2698.933 kb on - strand at 2698.933 kb on - strand at 2698.940 kb on - strand at 2698.940 kb on - strand at 2698.946 kb on + strand at 2698.953 kb on + strand at 2698.953 kb on + strand at 2698.974 kb on - strand at 2698.974 kb on - strand at 2698.989 kb on + strand at 2698.989 kb on + strand at 2698.989 kb on + strand at 2698.990 kb on - strand at 2698.994 kb on + strand at 2698.994 kb on + strand at 2698.994 kb on + strand at 2698.994 kb on + strand at 2698.994 kb on + strand at 2698.995 kb on - strand at 2698.995 kb on - strand at 2698.995 kb on - strand at 2699.046 kb on + strand at 2699.046 kb on + strand at 2699.047 kb on - strand at 2699.047 kb on - strand at 2699.047 kb on - strand at 2699.047 kb on - strand at 2699.049 kb on + strand at 2699.049 kb on + strand at 2699.049 kb on + strand at 2699.049 kb on + strand at 2699.049 kb on + strand at 2699.049 kb on + strand at 2699.050 kb on - strand at 2699.050 kb on - strand at 2699.050 kb on - strand at 2699.050 kb on - strand at 2699.054 kb on + strand at 2699.054 kb on + strand at 2699.054 kb on + strand at 2699.055 kb on - strand at 2699.055 kb on - strand at 2699.078 kb on + strand at 2699.079 kb on - strand at 2699.090 kb on + strand at 2699.156 kb on + strand, within Sama_2235 at 2699.156 kb on + strand, within Sama_2235 at 2699.156 kb on + strand, within Sama_2235
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 2,696,503 - Sama_2232 0.11 -1.6 2,696,808 + Sama_2232 0.47 -2.5 2,696,809 - Sama_2232 0.47 -2.2 2,696,809 - Sama_2232 0.47 -2.7 2,696,816 - Sama_2232 0.48 -2.7 2,696,978 - Sama_2232 0.67 -2.3 2,697,043 + Sama_2232 0.75 -1.9 2,697,044 - Sama_2232 0.75 -3.4 2,697,117 + Sama_2232 0.83 -2.9 2,697,118 - Sama_2232 0.84 -2.5 2,697,128 + Sama_2232 0.85 -2.3 2,697,167 - Sama_2232 0.89 -2.3 2,697,181 + -3.5 2,697,182 - -4.8 2,697,202 + -1.3 2,697,202 + -2.7 2,697,202 + -1.9 2,697,202 + -1.0 2,697,202 + -2.0 2,697,202 + -1.1 2,697,203 - +0.6 2,697,203 - -0.5 2,697,203 - -0.0 2,697,203 - -1.4 2,697,203 - +1.1 2,697,203 - -0.5 2,697,203 - -0.3 2,697,203 - -2.0 2,697,204 + -3.7 2,697,204 + -1.2 2,697,205 - +0.5 2,697,205 - -0.1 2,697,205 - -0.2 2,697,258 - -0.2 2,697,282 + -0.2 2,697,316 - +0.0 2,697,316 - +0.4 2,697,318 + -0.4 2,697,319 - +0.7 2,697,501 + +0.1 2,697,513 + +0.7 2,697,522 - Sama_2233 0.11 -1.3 2,697,534 - Sama_2233 0.12 +0.2 2,697,553 + Sama_2233 0.15 -1.9 2,697,784 + Sama_2233 0.45 +0.0 2,697,812 + Sama_2233 0.49 -0.7 2,697,813 - Sama_2233 0.49 +0.7 2,697,813 - Sama_2233 0.49 +0.5 2,697,817 - Sama_2233 0.50 -1.8 2,697,817 - Sama_2233 0.50 -0.2 2,697,817 - Sama_2233 0.50 -0.6 2,697,817 - Sama_2233 0.50 -1.0 2,697,817 - Sama_2233 0.50 -0.7 2,697,929 - Sama_2233 0.65 -0.2 2,698,009 - Sama_2233 0.75 +1.0 2,698,126 + -0.9 2,698,126 + -0.3 2,698,127 - -1.8 2,698,127 - -1.9 2,698,127 - -0.3 2,698,139 + -1.8 2,698,140 - +0.7 2,698,144 + -0.0 2,698,144 + -0.0 2,698,144 + -1.4 2,698,145 - +1.0 2,698,145 - +1.0 2,698,145 - -0.6 2,698,145 - +1.7 2,698,145 - -0.4 2,698,145 - -0.3 2,698,145 - -1.5 2,698,145 - +1.0 2,698,145 - -0.8 2,698,178 + -1.7 2,698,221 + -0.4 2,698,230 - +1.5 2,698,230 - -0.9 2,698,230 - -1.1 2,698,272 + -1.2 2,698,272 + -1.1 2,698,272 + -0.9 2,698,326 + -1.5 2,698,326 + -0.1 2,698,326 + -0.3 2,698,326 + +1.2 2,698,326 + +0.4 2,698,327 - -1.1 2,698,327 - +0.2 2,698,338 + -0.5 2,698,338 + -1.2 2,698,338 + -1.3 2,698,338 + -1.6 2,698,338 + +0.8 2,698,339 - -0.6 2,698,383 + -2.0 2,698,383 + -0.9 2,698,452 - Sama_2234 0.20 -0.2 2,698,487 + Sama_2234 0.25 +0.8 2,698,624 + Sama_2234 0.48 -0.3 2,698,624 + Sama_2234 0.48 +1.3 2,698,624 + Sama_2234 0.48 +0.7 2,698,625 - Sama_2234 0.48 +0.6 2,698,660 - Sama_2234 0.54 -0.8 2,698,696 + Sama_2234 0.60 +0.5 2,698,697 - Sama_2234 0.60 -1.3 2,698,697 - Sama_2234 0.60 +0.5 2,698,697 - Sama_2234 0.60 -1.0 2,698,697 - Sama_2234 0.60 +1.1 2,698,697 - Sama_2234 0.60 +0.9 2,698,697 - Sama_2234 0.60 +2.6 2,698,822 + Sama_2234 0.80 -0.2 2,698,829 + Sama_2234 0.81 -0.5 2,698,830 - Sama_2234 0.82 -1.1 2,698,830 - Sama_2234 0.82 -2.6 2,698,848 + Sama_2234 0.85 -0.7 2,698,874 + Sama_2234 0.89 +0.4 2,698,898 - -1.0 2,698,932 + +0.1 2,698,933 - +0.1 2,698,933 - -0.2 2,698,933 - -2.4 2,698,940 - -0.3 2,698,940 - -0.9 2,698,946 + -0.2 2,698,953 + -0.6 2,698,953 + +0.2 2,698,974 - -1.5 2,698,974 - +2.9 2,698,989 + +1.7 2,698,989 + +0.2 2,698,989 + -1.0 2,698,990 - -1.3 2,698,994 + +1.3 2,698,994 + -0.4 2,698,994 + -0.5 2,698,994 + -0.8 2,698,994 + +0.2 2,698,995 - -1.5 2,698,995 - +0.1 2,698,995 - -0.1 2,699,046 + -2.8 2,699,046 + +0.6 2,699,047 - -0.2 2,699,047 - -0.6 2,699,047 - +3.2 2,699,047 - +4.5 2,699,049 + +4.2 2,699,049 + +2.4 2,699,049 + -0.0 2,699,049 + +0.3 2,699,049 + +1.3 2,699,049 + +0.7 2,699,050 - -0.3 2,699,050 - +0.5 2,699,050 - +0.1 2,699,050 - -1.6 2,699,054 + +0.4 2,699,054 + -1.5 2,699,054 + +0.5 2,699,055 - +1.1 2,699,055 - +0.1 2,699,078 + -0.5 2,699,079 - -1.6 2,699,090 + +0.6 2,699,156 + Sama_2235 0.12 -1.2 2,699,156 + Sama_2235 0.12 +0.3 2,699,156 + Sama_2235 0.12 -0.5
Or see this region's nucleotide sequence