Strain Fitness in Shewanella amazonensis SB2B around Sama_2002

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
2,430,776	+				-0.7
2,430,822	+				+0.6
2,430,822	+				-0.1
2,430,822	+				-1.1
2,430,822	+				-0.4
2,430,823	-				-0.2
2,430,853	+		Sama_2001	0.11	-0.0
2,430,853	+		Sama_2001	0.11	+1.2
2,430,853	+		Sama_2001	0.11	-1.2
2,430,853	+		Sama_2001	0.11	-1.1
2,430,854	-		Sama_2001	0.11	+0.0
2,430,854	-		Sama_2001	0.11	-0.5
2,430,854	-		Sama_2001	0.11	-0.7
2,430,854	-		Sama_2001	0.11	+1.2
2,430,854	-		Sama_2001	0.11	-1.7
2,430,854	-		Sama_2001	0.11	+0.4
2,430,865	+		Sama_2001	0.12	+0.9
2,430,865	+		Sama_2001	0.12	-0.7
2,430,866	-		Sama_2001	0.12	+0.6
2,430,866	-		Sama_2001	0.12	+0.1
2,430,871	+		Sama_2001	0.12	+0.1
2,430,871	+		Sama_2001	0.12	-0.5
2,430,871	+		Sama_2001	0.12	-0.0
2,430,871	+		Sama_2001	0.12	-0.8
2,430,871	+		Sama_2001	0.12	+1.3
2,430,871	+		Sama_2001	0.12	+0.8
2,430,872	-		Sama_2001	0.12	-0.1
2,430,872	-		Sama_2001	0.12	-0.5
2,430,872	-		Sama_2001	0.12	-0.3
2,430,872	-		Sama_2001	0.12	-0.1
2,430,872	-		Sama_2001	0.12	+0.1
2,430,872	-		Sama_2001	0.12	+1.6
2,430,872	-		Sama_2001	0.12	+0.9
2,430,872	-		Sama_2001	0.12	+0.1
2,430,872	-		Sama_2001	0.12	+1.6
2,431,127	+		Sama_2001	0.37	+0.1
2,431,127	+		Sama_2001	0.37	-1.3
2,431,178	+		Sama_2001	0.42	-1.8
2,431,178	+		Sama_2001	0.42	+0.6
2,431,178	+		Sama_2001	0.42	-0.4
2,431,183	-		Sama_2001	0.42	-0.1
2,431,217	-		Sama_2001	0.45	-0.3
2,431,258	-		Sama_2001	0.49	+0.6
2,431,428	+		Sama_2001	0.66	-1.3
2,431,428	+		Sama_2001	0.66	-0.1
2,431,428	+		Sama_2001	0.66	-0.4
2,431,429	-		Sama_2001	0.66	-0.6
2,431,429	-		Sama_2001	0.66	+0.9
2,431,429	-		Sama_2001	0.66	+0.3
2,431,429	-		Sama_2001	0.66	+0.9
2,431,432	+		Sama_2001	0.66	-0.7
2,431,433	-		Sama_2001	0.66	+0.9
2,431,433	-		Sama_2001	0.66	+0.2
2,431,433	-		Sama_2001	0.66	+0.6
2,431,433	-		Sama_2001	0.66	+0.0
2,431,433	-		Sama_2001	0.66	+0.6
2,431,433	-		Sama_2001	0.66	+1.2
2,431,514	-		Sama_2001	0.74	+0.9
2,431,514	-		Sama_2001	0.74	-0.1
2,431,736	-				-1.3
2,431,773	+				-0.5
2,431,774	-				+0.1
2,431,875	-		Sama_2002	0.16	-1.5
2,431,875	-		Sama_2002	0.16	+1.1
2,431,875	-		Sama_2002	0.16	+0.6
2,431,897	+		Sama_2002	0.19	-0.4
2,431,897	+		Sama_2002	0.19	+0.5
2,431,897	+		Sama_2002	0.19	+0.4
2,431,897	+		Sama_2002	0.19	+0.8
2,431,898	-		Sama_2002	0.20	+0.8
2,431,900	+		Sama_2002	0.20	+0.5
2,431,937	+		Sama_2002	0.26	+0.4
2,431,937	+		Sama_2002	0.26	+0.9
2,431,938	-		Sama_2002	0.26	+0.3
2,431,938	-		Sama_2002	0.26	-0.1
2,431,938	-		Sama_2002	0.26	+0.7
2,431,965	+		Sama_2002	0.30	+0.2
2,431,965	+		Sama_2002	0.30	-1.2
2,431,965	+		Sama_2002	0.30	+0.8
2,431,965	+		Sama_2002	0.30	-0.1
2,431,966	-		Sama_2002	0.30	-1.9
2,431,966	-		Sama_2002	0.30	-0.9
2,431,999	+		Sama_2002	0.35	-1.5
2,431,999	+		Sama_2002	0.35	-0.0
2,432,000	-		Sama_2002	0.35	+2.4
2,432,000	-		Sama_2002	0.35	-0.1
2,432,056	+		Sama_2002	0.44	-1.2
2,432,081	-		Sama_2002	0.48	+0.3
2,432,081	-		Sama_2002	0.48	+2.3
2,432,140	+		Sama_2002	0.57	-1.2
2,432,141	-		Sama_2002	0.57	-0.2
2,432,141	-		Sama_2002	0.57	-1.4
2,432,166	+		Sama_2002	0.61	-1.0
2,432,245	+		Sama_2002	0.73	-0.7
2,432,252	+		Sama_2002	0.74	+1.4
2,432,306	+		Sama_2002	0.83	+1.3
2,432,323	+		Sama_2002	0.85	+4.5
2,432,323	+		Sama_2002	0.85	-1.8
2,432,323	+		Sama_2002	0.85	-0.3
2,432,323	+		Sama_2002	0.85	+0.2
2,432,323	+		Sama_2002	0.85	+0.3
2,432,323	+		Sama_2002	0.85	-2.3
2,432,323	+		Sama_2002	0.85	-0.9
2,432,323	+		Sama_2002	0.85	+2.4
2,432,324	-		Sama_2002	0.86	+1.5
2,432,324	-		Sama_2002	0.86	-1.4
2,432,324	-		Sama_2002	0.86	-0.5
2,432,324	-		Sama_2002	0.86	+0.7
2,432,324	-		Sama_2002	0.86	-0.0
2,432,324	-		Sama_2002	0.86	+0.7
2,432,324	-		Sama_2002	0.86	+1.2
2,432,324	-		Sama_2002	0.86	-2.2
2,432,324	-		Sama_2002	0.86	+0.8
2,432,324	-		Sama_2002	0.86	+1.7
2,432,324	-		Sama_2002	0.86	+1.0
2,432,324	-		Sama_2002	0.86	-0.8
2,432,324	-		Sama_2002	0.86	+0.3
2,432,324	-		Sama_2002	0.86	+0.6
2,432,324	-		Sama_2002	0.86	-1.1
2,432,325	+		Sama_2002	0.86	-1.0
2,432,325	+		Sama_2002	0.86	+0.4
2,432,325	+		Sama_2002	0.86	+0.3
2,432,326	-		Sama_2002	0.86	+0.4
2,432,326	-		Sama_2002	0.86	-1.3
2,432,326	-		Sama_2002	0.86	-0.5
2,432,326	-		Sama_2002	0.86	-1.7
2,432,444	+				-0.5
2,432,588	+				+0.9
2,432,588	+				+0.6
2,432,629	+				-0.1
2,432,630	-		Sama_2003	0.10	+0.8
2,432,677	-		Sama_2003	0.12	-1.0
2,432,759	+		Sama_2003	0.16	+0.5
2,432,760	-		Sama_2003	0.16	-0.7
2,432,789	+		Sama_2003	0.17	-0.6
2,432,790	-		Sama_2003	0.17	-0.9
2,432,793	-		Sama_2003	0.17	+0.4
2,432,803	-		Sama_2003	0.18	+0.5
2,432,803	-		Sama_2003	0.18	-1.4
2,432,803	-		Sama_2003	0.18	-0.4
2,432,847	-		Sama_2003	0.20	+1.8
2,432,863	+		Sama_2003	0.20	+0.2
2,432,863	+		Sama_2003	0.20	-1.3
2,432,864	-		Sama_2003	0.20	+0.2
2,432,864	-		Sama_2003	0.20	+0.6
2,432,864	-		Sama_2003	0.20	-1.5
2,432,878	-		Sama_2003	0.21	-1.7
2,433,050	-		Sama_2003	0.29	-1.3
2,433,120	-		Sama_2003	0.32	-0.4
2,433,140	+		Sama_2003	0.33	-0.5
2,433,159	-		Sama_2003	0.33	+0.2
2,433,195	+		Sama_2003	0.35	-1.4
2,433,195	+		Sama_2003	0.35	+0.8
2,433,196	-		Sama_2003	0.35	+0.3
2,433,213	-		Sama_2003	0.36	-0.5
2,433,213	-		Sama_2003	0.36	-0.8
2,433,213	-		Sama_2003	0.36	+1.6
2,433,296	+		Sama_2003	0.39	-0.3
2,433,296	+		Sama_2003	0.39	-0.4
2,433,296	+		Sama_2003	0.39	+2.5
2,433,357	-		Sama_2003	0.42	-1.6
2,433,357	-		Sama_2003	0.42	-0.4
2,433,359	+		Sama_2003	0.42	+0.6
2,433,359	+		Sama_2003	0.42	-0.5
2,433,360	-		Sama_2003	0.42	+0.2
2,433,402	-		Sama_2003	0.44	+0.3