Strain Fitness in Shewanella amazonensis SB2B around Sama_1261

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
1,547,349	-		Sama_1259	0.76	-1.9
1,547,351	+		Sama_1259	0.76	-2.3
1,547,535	-				-1.4
1,547,536	+				-2.0
1,547,536	+				-1.3
1,547,536	+				-0.8
1,547,537	-				-2.3
1,547,537	-				+0.0
1,547,557	+				-1.3
1,547,603	+				-0.6
1,547,603	+				-2.2
1,547,603	+				-1.0
1,547,604	-				-2.2
1,547,651	+				+0.1
1,547,651	+				-1.6
1,547,658	+				+1.0
1,547,658	+				-0.3
1,547,658	+				-0.1
1,547,658	+				-0.1
1,547,658	+				-0.3
1,547,658	+				-0.5
1,547,658	+				-0.8
1,547,660	+				-2.1
1,547,660	+				-0.5
1,547,660	+				-1.4
1,547,660	+				-0.7
1,547,661	-				-0.6
1,547,682	+				-0.6
1,547,682	+				-0.9
1,547,770	+		Sama_1260	0.15	-0.0
1,547,771	-		Sama_1260	0.15	-0.1
1,547,771	-		Sama_1260	0.15	+0.5
1,547,771	-		Sama_1260	0.15	-0.3
1,547,775	-		Sama_1260	0.15	-0.7
1,547,866	+		Sama_1260	0.33	+0.7
1,547,866	+		Sama_1260	0.33	+1.7
1,547,867	-		Sama_1260	0.34	+3.7
1,547,867	-		Sama_1260	0.34	-0.4
1,547,870	-		Sama_1260	0.34	+0.0
1,547,907	-		Sama_1260	0.41	+0.7
1,547,921	+		Sama_1260	0.44	-1.4
1,547,921	+		Sama_1260	0.44	-1.4
1,547,922	-		Sama_1260	0.44	-0.6
1,547,922	-		Sama_1260	0.44	+0.8
1,547,922	-		Sama_1260	0.44	-0.1
1,547,922	-		Sama_1260	0.44	+0.4
1,547,922	-		Sama_1260	0.44	-1.2
1,547,922	-		Sama_1260	0.44	+0.6
1,547,960	-		Sama_1260	0.52	-0.4
1,547,975	+		Sama_1260	0.55	+0.0
1,547,975	+		Sama_1260	0.55	-0.6
1,547,976	-		Sama_1260	0.55	+0.3
1,548,068	+		Sama_1260	0.73	+0.5
1,548,068	+		Sama_1260	0.73	-0.8
1,548,068	+		Sama_1260	0.73	+0.7
1,548,069	-		Sama_1260	0.73	-0.0
1,548,069	-		Sama_1260	0.73	+1.0
1,548,072	+		Sama_1260	0.74	-1.9
1,548,072	+		Sama_1260	0.74	+0.6
1,548,072	+		Sama_1260	0.74	-1.4
1,548,072	+		Sama_1260	0.74	+2.0
1,548,072	+		Sama_1260	0.74	+1.2
1,548,072	+		Sama_1260	0.74	+1.8
1,548,072	+		Sama_1260	0.74	+0.1
1,548,072	+		Sama_1260	0.74	-0.8
1,548,072	+		Sama_1260	0.74	-0.4
1,548,072	+		Sama_1260	0.74	-3.5
1,548,072	+		Sama_1260	0.74	-0.6
1,548,073	-		Sama_1260	0.74	+3.1
1,548,073	-		Sama_1260	0.74	+1.7
1,548,073	-		Sama_1260	0.74	-1.7
1,548,104	-		Sama_1260	0.80	-1.6
1,548,104	-		Sama_1260	0.80	+0.2
1,548,104	-		Sama_1260	0.80	+0.3
1,548,142	-		Sama_1260	0.87	+1.5
1,548,198	+				+0.8
1,548,223	+				+0.4
1,548,229	-				-0.3
1,548,229	-				+0.8
1,548,232	+				+1.4
1,548,233	-				+0.2
1,548,238	+				-0.6
1,548,239	-				+0.2
1,548,239	-				+0.5
1,548,241	-				+0.7
1,548,243	-				+3.4
1,548,258	-				-1.4
1,548,284	-				-1.8
1,548,309	+				-0.7
1,548,310	-				+1.4
1,548,435	+				+0.2
1,548,444	+				-0.3
1,548,444	+				-1.6
1,548,445	-				-0.1
1,548,445	-				-1.4
1,548,452	+				+0.1
1,548,453	-				+4.5
1,548,453	-				+0.4
1,548,458	-				-1.4
1,548,485	+		Sama_1261	0.11	-0.8
1,548,512	+		Sama_1261	0.12	+3.6
1,548,512	+		Sama_1261	0.12	+0.2
1,548,548	+		Sama_1261	0.14	+0.2
1,548,548	+		Sama_1261	0.14	+0.2
1,548,569	+		Sama_1261	0.16	+0.5
1,548,570	-		Sama_1261	0.16	-1.2
1,548,571	+		Sama_1261	0.16	+0.4
1,548,571	+		Sama_1261	0.16	+3.7
1,548,571	+		Sama_1261	0.16	-2.3
1,548,572	-		Sama_1261	0.16	-1.4
1,548,572	-		Sama_1261	0.16	+1.5
1,548,572	-		Sama_1261	0.16	-1.5
1,548,572	-		Sama_1261	0.16	-0.7
1,548,574	+		Sama_1261	0.16	+1.4
1,548,575	-		Sama_1261	0.16	+0.8
1,548,581	+		Sama_1261	0.16	+0.4
1,548,582	-		Sama_1261	0.16	+2.7
1,548,603	+		Sama_1261	0.17	-0.1
1,548,603	+		Sama_1261	0.17	+0.3
1,548,603	+		Sama_1261	0.17	+0.6
1,548,603	+		Sama_1261	0.17	-0.7
1,548,603	+		Sama_1261	0.17	-2.0
1,548,604	-		Sama_1261	0.17	+0.1
1,548,604	-		Sama_1261	0.17	+0.2
1,548,604	-		Sama_1261	0.17	-0.5
1,548,604	-		Sama_1261	0.17	-1.1
1,548,607	+		Sama_1261	0.18	+1.3
1,548,607	+		Sama_1261	0.18	-1.8
1,548,607	+		Sama_1261	0.18	-0.1
1,548,607	+		Sama_1261	0.18	+0.9
1,548,607	+		Sama_1261	0.18	-0.4
1,548,607	+		Sama_1261	0.18	-0.8
1,548,607	+		Sama_1261	0.18	-0.4
1,548,608	-		Sama_1261	0.18	+2.1
1,548,608	-		Sama_1261	0.18	+2.0
1,548,648	+		Sama_1261	0.20	+2.5
1,548,648	+		Sama_1261	0.20	+1.3
1,548,649	-		Sama_1261	0.20	-1.4
1,548,656	+		Sama_1261	0.20	-0.4
1,548,723	-		Sama_1261	0.24	-0.3
1,548,727	+		Sama_1261	0.24	+0.7
1,548,727	+		Sama_1261	0.24	-0.6
1,548,728	-		Sama_1261	0.24	+1.2
1,548,733	+		Sama_1261	0.25	-0.1
1,548,733	+		Sama_1261	0.25	+0.0
1,548,733	+		Sama_1261	0.25	-1.2
1,548,733	+		Sama_1261	0.25	-2.2
1,548,734	-		Sama_1261	0.25	-1.3
1,548,734	-		Sama_1261	0.25	-0.6
1,548,795	-		Sama_1261	0.28	+0.8
1,548,817	-		Sama_1261	0.29	+0.3
1,548,817	-		Sama_1261	0.29	+0.4
1,548,817	-		Sama_1261	0.29	+0.5
1,548,817	-		Sama_1261	0.29	+0.1
1,548,817	-		Sama_1261	0.29	-0.8
1,548,882	+		Sama_1261	0.33	+2.0
1,548,883	-		Sama_1261	0.33	-2.1
1,548,883	-		Sama_1261	0.33	-0.2
1,548,883	-		Sama_1261	0.33	+0.9
1,548,897	+		Sama_1261	0.33	-1.4
1,548,903	+		Sama_1261	0.34	-0.1
1,548,904	-		Sama_1261	0.34	+0.5
1,548,904	-		Sama_1261	0.34	+0.8
1,548,959	-		Sama_1261	0.37	-0.1
1,549,009	+		Sama_1261	0.40	-1.2
1,549,010	-		Sama_1261	0.40	+0.5
1,549,100	+		Sama_1261	0.45	+0.7
1,549,100	+		Sama_1261	0.45	+0.3
1,549,100	+		Sama_1261	0.45	+0.3
1,549,100	+		Sama_1261	0.45	-0.5
1,549,101	-		Sama_1261	0.45	-0.2
1,549,101	-		Sama_1261	0.45	-0.5
1,549,150	+		Sama_1261	0.47	+0.9
1,549,160	+		Sama_1261	0.48	+0.1
1,549,160	+		Sama_1261	0.48	+0.3
1,549,243	+		Sama_1261	0.52	+3.1
1,549,297	+		Sama_1261	0.55	-0.3
1,549,335	-		Sama_1261	0.57	+0.0
1,549,371	-		Sama_1261	0.59	-2.1
1,549,372	+		Sama_1261	0.59	+1.9
1,549,372	+		Sama_1261	0.59	-1.2
1,549,372	+		Sama_1261	0.59	-0.2
1,549,381	+		Sama_1261	0.60	-0.2
1,549,439	+		Sama_1261	0.63	-1.9
1,549,439	+		Sama_1261	0.63	-0.1
1,549,440	-		Sama_1261	0.63	+0.2
1,549,493	+		Sama_1261	0.66	-1.2
1,549,493	+		Sama_1261	0.66	-0.7
1,549,494	-		Sama_1261	0.66	-1.8
1,549,494	-		Sama_1261	0.66	+0.6
1,549,494	-		Sama_1261	0.66	-1.6
1,549,494	-		Sama_1261	0.66	-0.1
1,549,531	-		Sama_1261	0.68	-1.6
1,549,535	+		Sama_1261	0.68	+0.1
1,549,535	+		Sama_1261	0.68	+0.7
1,549,536	-		Sama_1261	0.68	+1.2
1,549,536	-		Sama_1261	0.68	-1.5
1,549,536	-		Sama_1261	0.68	-0.2
1,549,536	-		Sama_1261	0.68	-1.8
1,549,536	-		Sama_1261	0.68	+1.8
1,549,536	-		Sama_1261	0.68	-0.4
1,549,536	-		Sama_1261	0.68	-2.5
1,549,547	+		Sama_1261	0.69	-0.7
1,549,547	+		Sama_1261	0.69	+0.2
1,549,547	+		Sama_1261	0.69	-1.8
1,549,547	+		Sama_1261	0.69	-0.8
1,549,547	+		Sama_1261	0.69	-1.3
1,549,548	-		Sama_1261	0.69	+0.5
1,549,548	-		Sama_1261	0.69	+2.8
1,549,548	-		Sama_1261	0.69	-0.8
1,549,548	-		Sama_1261	0.69	-0.9
1,549,548	-		Sama_1261	0.69	-0.6
1,549,555	+		Sama_1261	0.69	+0.4
1,549,555	+		Sama_1261	0.69	+1.8
1,549,555	+		Sama_1261	0.69	+0.7
1,549,679	+		Sama_1261	0.76	-0.6
1,549,681	+		Sama_1261	0.76	-1.0
1,549,682	-		Sama_1261	0.76	-1.2
1,549,709	+		Sama_1261	0.78	+0.4
1,549,709	+		Sama_1261	0.78	+1.7
1,549,710	-		Sama_1261	0.78	+0.5
1,549,718	+		Sama_1261	0.78	+0.7
1,549,719	-		Sama_1261	0.78	+0.1
1,549,754	+		Sama_1261	0.80	-0.1
1,549,754	+		Sama_1261	0.80	-0.3
1,549,760	+		Sama_1261	0.81	-0.8
1,549,761	-		Sama_1261	0.81	-0.4
1,549,761	-		Sama_1261	0.81	+0.0
1,549,821	+		Sama_1261	0.84	-0.1
1,549,822	-		Sama_1261	0.84	+0.9
1,549,822	-		Sama_1261	0.84	-0.9
1,549,822	-		Sama_1261	0.84	+0.0
1,549,859	+		Sama_1261	0.86	-1.0
1,549,859	+		Sama_1261	0.86	+1.8
1,549,859	+		Sama_1261	0.86	-0.0
1,549,859	+		Sama_1261	0.86	-1.0
1,549,859	+		Sama_1261	0.86	-0.6
1,549,859	+		Sama_1261	0.86	-0.2
1,549,859	+		Sama_1261	0.86	-0.3
1,549,860	-		Sama_1261	0.86	+2.4
1,549,860	-		Sama_1261	0.86	-1.7
1,549,861	+		Sama_1261	0.86	-0.2
1,549,861	+		Sama_1261	0.86	-0.6
1,549,861	+		Sama_1261	0.86	-0.8
1,549,861	+		Sama_1261	0.86	+1.6
1,549,862	-		Sama_1261	0.86	-0.6
1,549,862	-		Sama_1261	0.86	-0.2
1,549,908	+		Sama_1261	0.89	-0.1
1,549,908	+		Sama_1261	0.89	-0.9
1,549,908	+		Sama_1261	0.89	-0.1
1,549,916	+		Sama_1261	0.89	+0.8
1,549,916	+		Sama_1261	0.89	-0.8
1,549,916	+		Sama_1261	0.89	-0.5
1,549,916	+		Sama_1261	0.89	-1.2
1,549,916	+		Sama_1261	0.89	+0.8
1,549,916	+		Sama_1261	0.89	-2.5
1,549,916	+		Sama_1261	0.89	-1.0
1,549,916	+		Sama_1261	0.89	-0.8
1,549,916	+		Sama_1261	0.89	-0.5
1,549,916	+		Sama_1261	0.89	+0.6
1,549,917	-		Sama_1261	0.89	-0.4
1,549,917	-		Sama_1261	0.89	-0.3
1,549,917	-		Sama_1261	0.89	-0.3
1,549,917	-		Sama_1261	0.89	-0.1
1,549,917	-		Sama_1261	0.89	-1.8
1,549,918	+		Sama_1261	0.89	+0.9
1,549,918	+		Sama_1261	0.89	-0.5
1,549,918	+		Sama_1261	0.89	-2.7
1,549,918	+		Sama_1261	0.89	-0.4
1,549,918	+		Sama_1261	0.89	+0.5
1,549,919	-		Sama_1261	0.89	-0.1
1,549,919	-		Sama_1261	0.89	+0.8
1,549,919	-		Sama_1261	0.89	+0.1
1,549,919	-		Sama_1261	0.89	+1.8
1,549,946	+				-0.3
1,549,946	+				+0.2
1,549,946	+				-0.3
1,549,946	+				-0.7
1,549,947	-				+1.0
1,549,947	-				+0.1
1,549,948	+				-2.6
1,549,948	+				-0.6
1,549,948	+				-0.4
1,549,949	-				-1.0
1,549,949	-				-0.1
1,549,949	-				-0.2
1,549,949	-				-1.8
1,549,963	+				+0.2
1,549,963	+				-0.3
1,549,963	+				+0.7
1,549,964	-				+0.1
1,550,008	+				+0.3
1,550,008	+				-0.5
1,550,008	+				+0.0
1,550,008	+				-0.2
1,550,009	-				-0.4
1,550,188	+				-1.2
1,550,188	+				-0.9
1,550,188	+				-1.2
1,550,188	+				-1.9
1,550,188	+				+1.5
1,550,188	+				+1.6
1,550,188	+				-0.5
1,550,188	+				-0.8
1,550,189	-				-1.5
1,550,189	-				+0.0
1,550,189	-				-0.8
1,550,189	-				-1.8
1,550,189	-				+0.2
1,550,189	-				-0.7
1,550,189	-				+0.2
1,550,237	+				-0.5
1,550,238	-				+0.0
1,550,517	+				-1.0
1,550,517	+				+0.4
1,550,517	+				-0.4
1,550,517	+				-0.4
1,550,517	+				+0.8
1,550,517	+				-0.1
1,550,517	+				-0.2
1,550,517	+				-0.1
1,550,517	+				+0.6
1,550,518	-				+0.8
1,550,518	-				-0.2
1,550,518	-				-0.3
1,550,518	-				-0.7
1,550,575	-				+0.6
1,550,575	-				-1.3
1,550,575	-				-1.5
1,550,625	+				+0.8
1,550,637	+				-0.4
1,550,648	+				+0.2
1,550,648	+				-0.3
1,550,648	+				-0.5
1,550,649	-				+0.7
1,550,649	-				-0.8
1,550,649	-				-0.1
1,550,649	-				-1.0
1,550,649	-				+0.3
1,550,649	-				-0.0
1,550,745	+		Sama_1263	0.19	-1.9
1,550,784	-		Sama_1263	0.26	-1.3
1,550,784	-		Sama_1263	0.26	-1.4
1,550,874	+		Sama_1263	0.43	+0.2
1,550,874	+		Sama_1263	0.43	+0.6
1,550,925	+		Sama_1263	0.52	+2.0
1,550,925	+		Sama_1263	0.52	-0.2
1,550,925	+		Sama_1263	0.52	+0.1
1,550,925	+		Sama_1263	0.52	-0.8
1,550,926	-		Sama_1263	0.52	-1.6
1,550,926	-		Sama_1263	0.52	+1.1
1,550,927	+		Sama_1263	0.52	+0.8
1,550,927	+		Sama_1263	0.52	-1.5
1,550,927	+		Sama_1263	0.52	-0.7
1,550,927	+		Sama_1263	0.52	+1.0
1,550,928	-		Sama_1263	0.52	-0.5
1,550,928	-		Sama_1263	0.52	-2.9
1,550,928	-		Sama_1263	0.52	-0.6
1,551,013	+		Sama_1263	0.68	-1.1
1,551,014	-		Sama_1263	0.68	-0.7
1,551,018	-		Sama_1263	0.69	-1.3
1,551,018	-		Sama_1263	0.69	+0.3
1,551,018	-		Sama_1263	0.69	-0.6
1,551,018	-		Sama_1263	0.69	-0.1
1,551,018	-		Sama_1263	0.69	-0.9