Strain Fitness in Shewanella amazonensis SB2B around Sama_1188

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
1,451,709	+				+0.3
1,451,709	+				-0.2
1,451,758	+				-0.3
1,451,758	+				+1.1
1,451,758	+				-0.4
1,451,759	-				-0.9
1,451,759	-				+0.6
1,451,759	-				-0.1
1,451,759	-				+0.4
1,451,759	-				+0.3
1,451,765	+				-0.7
1,451,766	-				-1.4
1,451,766	-				-0.4
1,451,785	-				-0.3
1,451,837	+				+0.2
1,451,837	+				-0.1
1,451,837	+				+0.7
1,451,838	-				-1.2
1,451,838	-				-1.1
1,451,941	+		Sama_1187	0.21	+0.4
1,451,941	+		Sama_1187	0.21	-0.4
1,451,941	+		Sama_1187	0.21	-0.3
1,451,941	+		Sama_1187	0.21	-1.0
1,451,941	+		Sama_1187	0.21	-0.6
1,451,941	+		Sama_1187	0.21	-1.5
1,451,941	+		Sama_1187	0.21	+1.2
1,451,941	+		Sama_1187	0.21	-1.5
1,451,942	-		Sama_1187	0.21	+0.1
1,451,942	-		Sama_1187	0.21	+0.1
1,451,942	-		Sama_1187	0.21	+1.4
1,451,942	-		Sama_1187	0.21	+3.0
1,451,942	-		Sama_1187	0.21	+0.3
1,451,942	-		Sama_1187	0.21	-0.1
1,451,942	-		Sama_1187	0.21	-0.9
1,451,986	-		Sama_1187	0.26	+1.2
1,451,989	+		Sama_1187	0.27	+0.6
1,451,990	-		Sama_1187	0.27	-0.4
1,451,990	-		Sama_1187	0.27	-0.2
1,451,990	-		Sama_1187	0.27	-0.5
1,452,009	+		Sama_1187	0.29	+0.1
1,452,034	+		Sama_1187	0.32	-0.2
1,452,035	-		Sama_1187	0.32	+0.6
1,452,056	+		Sama_1187	0.34	+1.1
1,452,056	+		Sama_1187	0.34	-2.0
1,452,056	+		Sama_1187	0.34	+0.3
1,452,124	-		Sama_1187	0.42	+0.8
1,452,285	-		Sama_1187	0.60	+2.9
1,452,305	-		Sama_1187	0.62	-1.3
1,452,308	+		Sama_1187	0.63	+1.4
1,452,309	-		Sama_1187	0.63	-0.4
1,452,337	+		Sama_1187	0.66	+0.7
1,452,382	+		Sama_1187	0.71	+1.2
1,452,383	-		Sama_1187	0.71	-0.1
1,452,383	-		Sama_1187	0.71	+0.4
1,452,383	-		Sama_1187	0.71	-0.2
1,452,396	-		Sama_1187	0.73	+0.0
1,452,396	-		Sama_1187	0.73	-0.9
1,452,444	-		Sama_1187	0.78	-0.4
1,452,591	+				+1.3
1,452,592	-				-0.6
1,452,592	-				-0.3
1,452,704	+				+1.4
1,452,758	-				-0.9
1,452,882	+				-1.6
1,452,882	+				-0.8
1,452,882	+				+1.7
1,452,883	-				-0.9
1,452,886	+				-0.1
1,452,886	+				-0.5
1,452,887	-				-1.5
1,452,887	-				-0.7
1,452,917	+				+1.4
1,452,917	+				+0.7
1,452,917	+				+0.2
1,452,917	+				+0.1
1,452,917	+				+1.3
1,452,918	-				+0.1
1,452,918	-				-0.3
1,452,918	-				+0.6
1,452,939	+				-0.1
1,452,940	-				+0.1
1,452,940	-				-0.8
1,453,079	+		Sama_1188	0.12	+0.7
1,453,080	-		Sama_1188	0.12	-1.5
1,453,084	+		Sama_1188	0.12	-0.2
1,453,084	+		Sama_1188	0.12	+0.6
1,453,085	-		Sama_1188	0.12	-0.5
1,453,085	-		Sama_1188	0.12	+1.2
1,453,085	-		Sama_1188	0.12	+1.1
1,453,139	+		Sama_1188	0.14	-0.5
1,453,139	+		Sama_1188	0.14	-1.3
1,453,139	+		Sama_1188	0.14	-2.2
1,453,140	-		Sama_1188	0.14	-2.6
1,453,140	-		Sama_1188	0.14	+0.1
1,453,178	+		Sama_1188	0.15	+0.8
1,453,179	-		Sama_1188	0.15	-0.7
1,453,179	-		Sama_1188	0.15	-2.0
1,453,179	-		Sama_1188	0.15	+2.4
1,453,179	-		Sama_1188	0.15	+0.7
1,453,202	-		Sama_1188	0.16	+0.8
1,453,202	-		Sama_1188	0.16	-0.9
1,453,208	+		Sama_1188	0.16	-0.2
1,453,307	+		Sama_1188	0.19	-0.3
1,453,399	+		Sama_1188	0.21	-0.6
1,453,400	-		Sama_1188	0.21	-0.1
1,453,473	-		Sama_1188	0.23	+1.1
1,453,479	+		Sama_1188	0.23	+0.6
1,453,522	+		Sama_1188	0.25	-0.2
1,453,522	+		Sama_1188	0.25	+0.4
1,453,523	-		Sama_1188	0.25	-1.4
1,453,523	-		Sama_1188	0.25	+1.0
1,453,595	+		Sama_1188	0.27	+0.1
1,453,595	+		Sama_1188	0.27	+0.5
1,453,595	+		Sama_1188	0.27	-0.3
1,453,596	-		Sama_1188	0.27	-0.0
1,453,616	-		Sama_1188	0.27	-0.6
1,453,616	-		Sama_1188	0.27	+0.0
1,453,616	-		Sama_1188	0.27	-1.2
1,453,662	-		Sama_1188	0.29	+3.2
1,453,693	+		Sama_1188	0.29	-0.4
1,453,694	-		Sama_1188	0.29	-0.5
1,453,751	+		Sama_1188	0.31	+0.1
1,453,751	+		Sama_1188	0.31	+0.5
1,453,751	+		Sama_1188	0.31	-1.2
1,453,789	+		Sama_1188	0.32	-0.8
1,453,789	+		Sama_1188	0.32	-0.4
1,453,790	-		Sama_1188	0.32	-1.0
1,453,790	-		Sama_1188	0.32	-0.3
1,453,903	+		Sama_1188	0.35	-0.2
1,453,903	+		Sama_1188	0.35	+0.8
1,453,903	+		Sama_1188	0.35	-1.0
1,453,904	-		Sama_1188	0.35	+0.1
1,453,904	-		Sama_1188	0.35	+2.7
1,453,972	+		Sama_1188	0.37	-0.4
1,454,038	+		Sama_1188	0.39	+0.6
1,454,038	+		Sama_1188	0.39	-0.9
1,454,038	+		Sama_1188	0.39	-0.6
1,454,039	-		Sama_1188	0.39	-0.8
1,454,039	-		Sama_1188	0.39	+1.0
1,454,042	+		Sama_1188	0.39	+0.1
1,454,043	-		Sama_1188	0.39	-0.1
1,454,050	+		Sama_1188	0.39	-0.8
1,454,060	+		Sama_1188	0.40	+1.2
1,454,060	+		Sama_1188	0.40	-1.7
1,454,069	+		Sama_1188	0.40	-1.0
1,454,069	+		Sama_1188	0.40	+0.6
1,454,070	-		Sama_1188	0.40	-1.7
1,454,070	-		Sama_1188	0.40	+0.1
1,454,072	+		Sama_1188	0.40	+0.7
1,454,072	+		Sama_1188	0.40	-2.3
1,454,073	-		Sama_1188	0.40	+0.6
1,454,073	-		Sama_1188	0.40	+1.1
1,454,086	+		Sama_1188	0.40	+0.1
1,454,086	+		Sama_1188	0.40	-2.4
1,454,087	-		Sama_1188	0.40	-0.3
1,454,087	-		Sama_1188	0.40	+1.3
1,454,087	-		Sama_1188	0.40	+0.1
1,454,123	-		Sama_1188	0.41	+0.8
1,454,198	+		Sama_1188	0.44	-0.3
1,454,198	+		Sama_1188	0.44	-0.4
1,454,198	+		Sama_1188	0.44	-0.2
1,454,198	+		Sama_1188	0.44	+3.0
1,454,198	+		Sama_1188	0.44	+0.6
1,454,198	+		Sama_1188	0.44	-1.0
1,454,198	+		Sama_1188	0.44	+0.9
1,454,198	+		Sama_1188	0.44	+1.6
1,454,198	+		Sama_1188	0.44	-1.8
1,454,198	+		Sama_1188	0.44	-0.3
1,454,198	+		Sama_1188	0.44	-0.5
1,454,198	+		Sama_1188	0.44	+0.4
1,454,198	+		Sama_1188	0.44	-1.1
1,454,199	-		Sama_1188	0.44	-1.3
1,454,199	-		Sama_1188	0.44	-1.5
1,454,199	-		Sama_1188	0.44	+0.2
1,454,199	-		Sama_1188	0.44	-0.0
1,454,200	+		Sama_1188	0.44	-0.1
1,454,200	+		Sama_1188	0.44	-0.7
1,454,200	+		Sama_1188	0.44	+0.3
1,454,200	+		Sama_1188	0.44	+0.1
1,454,200	+		Sama_1188	0.44	+2.9
1,454,200	+		Sama_1188	0.44	-0.9
1,454,200	+		Sama_1188	0.44	-0.2
1,454,200	+		Sama_1188	0.44	-1.1
1,454,200	+		Sama_1188	0.44	-0.3
1,454,200	+		Sama_1188	0.44	+0.7
1,454,200	+		Sama_1188	0.44	+0.3
1,454,200	+		Sama_1188	0.44	-1.1
1,454,201	-		Sama_1188	0.44	-0.1
1,454,201	-		Sama_1188	0.44	+0.7
1,454,201	-		Sama_1188	0.44	+3.9
1,454,201	-		Sama_1188	0.44	-0.5
1,454,201	-		Sama_1188	0.44	+1.2
1,454,201	-		Sama_1188	0.44	+1.5
1,454,201	-		Sama_1188	0.44	-0.5
1,454,201	-		Sama_1188	0.44	-0.5
1,454,207	+		Sama_1188	0.44	+1.0
1,454,253	+		Sama_1188	0.45	-0.4
1,454,253	+		Sama_1188	0.45	-2.2
1,454,254	-		Sama_1188	0.45	-0.1
1,454,280	+		Sama_1188	0.46	+0.1
1,454,290	+		Sama_1188	0.46	-0.9
1,454,291	-		Sama_1188	0.46	+2.1
1,454,306	+		Sama_1188	0.47	+1.1
1,454,375	+		Sama_1188	0.49	-0.4
1,454,375	+		Sama_1188	0.49	+2.1
1,454,376	-		Sama_1188	0.49	+0.5
1,454,376	-		Sama_1188	0.49	+0.4
1,454,376	-		Sama_1188	0.49	+0.5
1,454,376	-		Sama_1188	0.49	+0.5
1,454,384	+		Sama_1188	0.49	-0.2
1,454,385	-		Sama_1188	0.49	+0.3
1,454,408	+		Sama_1188	0.49	-0.3
1,454,408	+		Sama_1188	0.49	+1.3
1,454,413	+		Sama_1188	0.50	-0.3
1,454,413	+		Sama_1188	0.50	-1.6
1,454,413	+		Sama_1188	0.50	+0.9
1,454,413	+		Sama_1188	0.50	+0.8
1,454,413	+		Sama_1188	0.50	-2.0
1,454,414	-		Sama_1188	0.50	-1.7
1,454,468	+		Sama_1188	0.51	-0.0
1,454,468	+		Sama_1188	0.51	-2.3
1,454,469	-		Sama_1188	0.51	+1.6
1,454,502	+		Sama_1188	0.52	-0.7
1,454,502	+		Sama_1188	0.52	+0.0
1,454,502	+		Sama_1188	0.52	-0.3
1,454,518	+		Sama_1188	0.53	+0.1
1,454,523	-		Sama_1188	0.53	-1.8
1,454,587	+		Sama_1188	0.54	+2.3
1,454,587	+		Sama_1188	0.54	-1.2
1,454,621	-		Sama_1188	0.55	+2.4
1,454,703	+		Sama_1188	0.58	+0.1
1,454,703	+		Sama_1188	0.58	+0.3
1,454,703	+		Sama_1188	0.58	-0.5
1,454,703	+		Sama_1188	0.58	+0.5
1,454,704	-		Sama_1188	0.58	+0.0
1,454,704	-		Sama_1188	0.58	-0.4
1,454,710	+		Sama_1188	0.58	+0.2
1,454,710	+		Sama_1188	0.58	+1.1
1,454,718	+		Sama_1188	0.58	-0.4
1,454,718	+		Sama_1188	0.58	-0.0
1,454,748	+		Sama_1188	0.59	-0.5
1,454,941	+		Sama_1188	0.64	+1.1
1,454,941	+		Sama_1188	0.64	+3.4
1,454,942	-		Sama_1188	0.64	-0.4
1,455,011	-		Sama_1188	0.66	-0.1
1,455,077	-		Sama_1188	0.68	-2.5
1,455,090	-		Sama_1188	0.69	+0.1
1,455,090	-		Sama_1188	0.69	-1.7
1,455,129	+		Sama_1188	0.70	+2.6
1,455,129	+		Sama_1188	0.70	-1.8
1,455,129	+		Sama_1188	0.70	-1.3
1,455,129	+		Sama_1188	0.70	-2.0
1,455,130	-		Sama_1188	0.70	+0.6
1,455,130	-		Sama_1188	0.70	-0.8
1,455,130	-		Sama_1188	0.70	+2.1
1,455,130	-		Sama_1188	0.70	+0.2
1,455,161	+		Sama_1188	0.71	-0.9
1,455,161	+		Sama_1188	0.71	-1.4
1,455,161	+		Sama_1188	0.71	+2.1
1,455,161	+		Sama_1188	0.71	+0.3
1,455,161	+		Sama_1188	0.71	+0.9
1,455,162	-		Sama_1188	0.71	-1.1
1,455,162	-		Sama_1188	0.71	-0.0
1,455,172	+		Sama_1188	0.71	+0.3
1,455,172	+		Sama_1188	0.71	+1.1
1,455,172	+		Sama_1188	0.71	-0.7
1,455,173	-		Sama_1188	0.71	-0.2
1,455,175	+		Sama_1188	0.71	+0.5
1,455,176	-		Sama_1188	0.71	+0.2
1,455,185	+		Sama_1188	0.71	+0.8
1,455,185	+		Sama_1188	0.71	-1.3
1,455,185	+		Sama_1188	0.71	+2.1
1,455,185	+		Sama_1188	0.71	-0.4
1,455,185	+		Sama_1188	0.71	+2.4
1,455,185	+		Sama_1188	0.71	-0.1
1,455,186	-		Sama_1188	0.71	+0.3
1,455,186	-		Sama_1188	0.71	+0.3
1,455,186	-		Sama_1188	0.71	+1.0
1,455,186	-		Sama_1188	0.71	-0.4
1,455,186	-		Sama_1188	0.71	-0.0
1,455,186	-		Sama_1188	0.71	+0.9
1,455,186	-		Sama_1188	0.71	-1.4
1,455,186	-		Sama_1188	0.71	+0.3
1,455,186	-		Sama_1188	0.71	+0.6
1,455,274	+		Sama_1188	0.74	-0.5
1,455,275	+		Sama_1188	0.74	+1.0
1,455,353	+		Sama_1188	0.76	-0.8
1,455,353	+		Sama_1188	0.76	+2.1
1,455,353	+		Sama_1188	0.76	-0.4
1,455,373	+		Sama_1188	0.77	+0.9
1,455,374	-		Sama_1188	0.77	+0.9
1,455,377	-		Sama_1188	0.77	+0.5
1,455,384	+		Sama_1188	0.77	+1.5
1,455,413	+		Sama_1188	0.78	-0.2
1,455,413	+		Sama_1188	0.78	-0.3
1,455,414	-		Sama_1188	0.78	-0.5
1,455,414	-		Sama_1188	0.78	-1.2
1,455,414	-		Sama_1188	0.78	-0.3
1,455,416	+		Sama_1188	0.78	+0.6
1,455,416	+		Sama_1188	0.78	-1.3
1,455,416	+		Sama_1188	0.78	-1.4
1,455,417	-		Sama_1188	0.78	+0.6
1,455,515	+		Sama_1188	0.81	+0.2
1,455,515	+		Sama_1188	0.81	-0.1
1,455,516	-		Sama_1188	0.81	-0.0
1,455,516	-		Sama_1188	0.81	-1.3
1,455,556	+		Sama_1188	0.82	-1.3
1,455,556	+		Sama_1188	0.82	+0.7
1,455,556	+		Sama_1188	0.82	-1.4
1,455,579	-		Sama_1188	0.82	-1.2
1,455,593	+		Sama_1188	0.83	+0.8
1,455,619	+		Sama_1188	0.83	+1.2
1,455,620	-		Sama_1188	0.83	+1.8
1,455,659	+		Sama_1188	0.85	-0.5
1,455,659	+		Sama_1188	0.85	+0.4
1,455,659	+		Sama_1188	0.85	+1.8
1,455,659	+		Sama_1188	0.85	+0.5
1,455,659	+		Sama_1188	0.85	-0.4
1,455,659	+		Sama_1188	0.85	+2.0
1,455,659	+		Sama_1188	0.85	+0.8
1,455,660	-		Sama_1188	0.85	+0.8
1,455,660	-		Sama_1188	0.85	-0.9
1,455,660	-		Sama_1188	0.85	+1.1
1,455,660	-		Sama_1188	0.85	-0.1
1,455,660	-		Sama_1188	0.85	-1.8
1,455,660	-		Sama_1188	0.85	-0.3
1,455,660	-		Sama_1188	0.85	-0.5
1,455,660	-		Sama_1188	0.85	+0.8
1,455,684	+		Sama_1188	0.85	+0.9
1,455,685	-		Sama_1188	0.85	-1.4
1,455,700	+		Sama_1188	0.86	+2.4
1,455,806	+		Sama_1188	0.89	-0.7
1,455,806	+		Sama_1188	0.89	+0.3
1,455,807	-		Sama_1188	0.89	+0.5
1,455,807	-		Sama_1188	0.89	+1.0
1,455,812	-		Sama_1188	0.89	-0.3
1,455,876	-				+1.6
1,455,876	-				+0.1
1,455,922	+				+0.2
1,455,970	+				+0.7
1,455,970	+				+0.1
1,456,015	+				-0.8
1,456,015	+				-0.4
1,456,016	-				-1.8
1,456,017	+				+0.4
1,456,017	+				-1.2
1,456,017	+				-0.8
1,456,018	-				+1.0
1,456,018	-				+1.3
1,456,018	-				+0.9
1,456,018	-				+0.8
1,456,018	-				-1.3
1,456,018	-				+0.0
1,456,023	+				-0.6
1,456,024	-				+0.8
1,456,046	-				-0.4
1,456,047	+				+0.7
1,456,047	+				-1.6
1,456,047	+				-1.2
1,456,047	+				-0.4
1,456,047	+				+0.8
1,456,048	-				+1.3
1,456,048	-				-0.0
1,456,048	-				+0.4
1,456,048	-				-1.3
1,456,048	-				-1.8
1,456,048	-				-0.4
1,456,072	-				+0.1
1,456,090	+				-0.6
1,456,091	-				-1.1
1,456,183	+				-0.3
1,456,198	+				+0.5
1,456,199	-				-0.3
1,456,206	-				+0.7
1,456,255	-				-0.6
1,456,266	-				-0.1
1,456,271	+				-1.2
1,456,272	-				-1.9
1,456,298	+				-0.0
1,456,384	+				+0.3
1,456,384	+				+1.5
1,456,384	+				-1.2
1,456,384	+				-0.3
1,456,384	+				+0.2
1,456,384	+				+1.3
1,456,384	+				+0.6
1,456,384	+				-0.2
1,456,384	+				-2.2
1,456,384	+				-2.0
1,456,384	+				+2.1
1,456,385	-				-0.2
1,456,385	-				+1.1
1,456,385	-				+0.2
1,456,385	-				-2.5
1,456,385	-				+0.2
1,456,385	-				-0.6
1,456,385	-				-0.4
1,456,393	+				+1.6
1,456,393	+				-0.4
1,456,393	+				-0.2
1,456,393	+				+3.3
1,456,394	-				-0.5
1,456,394	-				-3.0
1,456,410	+				+0.8
1,456,410	+				-1.6
1,456,432	+				+0.5
1,456,459	+				+0.1
1,456,481	+				-1.3
1,456,482	-				-0.9
1,456,617	+				-0.8
1,456,687	+		Sama_1189	0.13	-1.8
1,456,687	+		Sama_1189	0.13	-0.0
1,456,688	-		Sama_1189	0.13	-0.8
1,456,704	+		Sama_1189	0.14	-2.0
1,456,705	-		Sama_1189	0.14	-1.8
1,456,806	+		Sama_1189	0.20	-0.4
1,456,806	+		Sama_1189	0.20	-1.9
1,456,807	-		Sama_1189	0.20	+0.5
1,456,829	+		Sama_1189	0.21	-0.5
1,456,830	-		Sama_1189	0.21	+0.1
1,456,918	+		Sama_1189	0.26	-2.5
1,456,927	+		Sama_1189	0.27	-1.4
1,456,927	+		Sama_1189	0.27	-2.2
1,456,928	-		Sama_1189	0.27	-1.3
1,456,928	-		Sama_1189	0.27	-2.6
1,456,928	-		Sama_1189	0.27	-3.2
1,456,936	+		Sama_1189	0.27	-0.8
1,456,937	-		Sama_1189	0.27	-1.9
1,456,937	-		Sama_1189	0.27	-1.5
1,456,959	+		Sama_1189	0.29	+1.8
1,456,960	-		Sama_1189	0.29	-3.0
1,456,992	+		Sama_1189	0.30	-1.3
1,456,992	+		Sama_1189	0.30	-3.0
1,456,993	-		Sama_1189	0.31	-2.0
1,456,993	-		Sama_1189	0.31	-2.3
1,457,108	+		Sama_1189	0.37	+0.7
1,457,108	+		Sama_1189	0.37	-1.8
1,457,173	+		Sama_1189	0.41	-3.0
1,457,173	+		Sama_1189	0.41	-2.5
1,457,173	+		Sama_1189	0.41	-0.8
1,457,173	+		Sama_1189	0.41	-2.1
1,457,174	-		Sama_1189	0.41	-0.6
1,457,174	-		Sama_1189	0.41	-2.3
1,457,174	-		Sama_1189	0.41	-2.1
1,457,175	+		Sama_1189	0.41	-2.5
1,457,175	+		Sama_1189	0.41	-1.5
1,457,175	+		Sama_1189	0.41	-2.7