Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0313 and Sama_0314 are separated by 169 nucleotides Sama_0314 and Sama_0315 are separated by 546 nucleotides Sama_0315 and Sama_0316 are separated by 133 nucleotides
Sama_0313: Sama_0313 - DNA topoisomerase I (RefSeq), at 378,604 to 379,386
_0313
Sama_0314: Sama_0314 - hypothetical protein (RefSeq), at 379,556 to 379,834
_0314
Sama_0315: Sama_0315 - hypothetical protein (RefSeq), at 380,381 to 380,974
_0315
Sama_0316: Sama_0316 - hypothetical protein (RefSeq), at 381,108 to 381,935
_0316
Position (kb) 380
381 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 379.439 kb on + strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.468 kb on - strand at 379.477 kb on - strand at 379.477 kb on - strand at 379.530 kb on + strand at 379.530 kb on + strand at 379.553 kb on + strand at 379.592 kb on + strand, within Sama_0314 at 379.598 kb on - strand, within Sama_0314 at 379.599 kb on + strand, within Sama_0314 at 379.599 kb on + strand, within Sama_0314 at 379.619 kb on - strand, within Sama_0314 at 379.619 kb on - strand, within Sama_0314 at 379.634 kb on + strand, within Sama_0314 at 379.635 kb on - strand, within Sama_0314 at 379.648 kb on + strand, within Sama_0314 at 379.673 kb on + strand, within Sama_0314 at 379.690 kb on - strand, within Sama_0314 at 379.690 kb on - strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.700 kb on - strand, within Sama_0314 at 379.712 kb on + strand, within Sama_0314 at 379.713 kb on - strand, within Sama_0314 at 379.748 kb on - strand, within Sama_0314 at 379.774 kb on + strand, within Sama_0314 at 379.799 kb on - strand, within Sama_0314 at 379.834 kb on + strand at 379.835 kb on - strand at 379.835 kb on - strand at 379.837 kb on - strand at 379.873 kb on + strand at 379.874 kb on - strand at 379.988 kb on - strand at 379.988 kb on - strand at 380.008 kb on + strand at 380.101 kb on + strand at 380.120 kb on - strand at 380.123 kb on - strand at 380.141 kb on + strand at 380.142 kb on - strand at 380.142 kb on - strand at 380.190 kb on + strand at 380.193 kb on + strand at 380.193 kb on + strand at 380.233 kb on + strand at 380.234 kb on - strand at 380.242 kb on + strand at 380.309 kb on + strand at 380.310 kb on - strand at 380.343 kb on - strand at 380.352 kb on + strand at 380.353 kb on - strand at 380.353 kb on - strand at 380.358 kb on + strand at 380.359 kb on - strand at 380.370 kb on + strand at 380.371 kb on - strand at 380.371 kb on - strand at 380.452 kb on + strand, within Sama_0315 at 380.452 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.511 kb on + strand, within Sama_0315 at 380.512 kb on - strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.633 kb on - strand, within Sama_0315 at 380.685 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.830 kb on + strand, within Sama_0315 at 380.879 kb on + strand, within Sama_0315 at 380.879 kb on + strand, within Sama_0315 at 380.880 kb on - strand, within Sama_0315 at 380.880 kb on - strand, within Sama_0315 at 380.918 kb on + strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.998 kb on + strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 381.011 kb on + strand at 381.011 kb on + strand at 381.011 kb on + strand at 381.012 kb on - strand at 381.012 kb on - strand at 381.012 kb on - strand at 381.018 kb on - strand at 381.018 kb on - strand at 381.018 kb on - strand at 381.021 kb on + strand at 381.021 kb on + strand at 381.022 kb on - strand at 381.022 kb on - strand at 381.035 kb on + strand at 381.036 kb on - strand at 381.110 kb on - strand at 381.141 kb on - strand at 381.152 kb on + strand at 381.153 kb on - strand at 381.153 kb on - strand at 381.241 kb on - strand, within Sama_0316 at 381.245 kb on + strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.378 kb on + strand, within Sama_0316 at 381.379 kb on - strand, within Sama_0316 at 381.446 kb on + strand, within Sama_0316 at 381.450 kb on + strand, within Sama_0316 at 381.451 kb on - strand, within Sama_0316 at 381.451 kb on - strand, within Sama_0316 at 381.517 kb on - strand, within Sama_0316 at 381.520 kb on - strand, within Sama_0316 at 381.675 kb on - strand, within Sama_0316 at 381.682 kb on - strand, within Sama_0316 at 381.682 kb on - strand, within Sama_0316 at 381.749 kb on + strand, within Sama_0316 at 381.749 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.755 kb on + strand, within Sama_0316 at 381.909 kb on - strand at 381.961 kb on + strand at 381.972 kb on + strand at 381.973 kb on - strand at 381.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 379,439 + -0.0 379,440 - -0.6 379,440 - +0.3 379,440 - +1.2 379,440 - -2.1 379,468 - -1.9 379,477 - +1.4 379,477 - -0.6 379,530 + -0.3 379,530 + -0.7 379,553 + -0.7 379,592 + Sama_0314 0.13 -0.3 379,598 - Sama_0314 0.15 +0.9 379,599 + Sama_0314 0.15 -1.1 379,599 + Sama_0314 0.15 -0.5 379,619 - Sama_0314 0.23 -1.4 379,619 - Sama_0314 0.23 -0.9 379,634 + Sama_0314 0.28 +0.8 379,635 - Sama_0314 0.28 -0.4 379,648 + Sama_0314 0.33 -0.5 379,673 + Sama_0314 0.42 +0.5 379,690 - Sama_0314 0.48 -0.1 379,690 - Sama_0314 0.48 +0.6 379,693 + Sama_0314 0.49 -0.6 379,693 + Sama_0314 0.49 +3.5 379,693 + Sama_0314 0.49 -1.5 379,700 - Sama_0314 0.52 -0.7 379,712 + Sama_0314 0.56 +0.6 379,713 - Sama_0314 0.56 +0.6 379,748 - Sama_0314 0.69 +1.4 379,774 + Sama_0314 0.78 -0.3 379,799 - Sama_0314 0.87 -0.5 379,834 + -0.4 379,835 - -0.4 379,835 - +0.0 379,837 - +0.9 379,873 + +0.0 379,874 - +0.3 379,988 - +1.4 379,988 - -0.6 380,008 + +2.8 380,101 + -0.3 380,120 - -0.7 380,123 - -0.8 380,141 + +0.4 380,142 - -0.9 380,142 - +0.9 380,190 + -0.1 380,193 + +0.3 380,193 + +1.4 380,233 + -0.5 380,234 - -0.4 380,242 + +0.8 380,309 + -0.4 380,310 - -1.1 380,343 - +1.0 380,352 + +1.8 380,353 - -0.7 380,353 - +0.1 380,358 + +0.4 380,359 - +2.0 380,370 + +1.2 380,371 - +0.3 380,371 - -0.5 380,452 + Sama_0315 0.12 +0.3 380,452 + Sama_0315 0.12 -0.8 380,500 + Sama_0315 0.20 -0.5 380,500 + Sama_0315 0.20 +1.1 380,500 + Sama_0315 0.20 +0.2 380,500 + Sama_0315 0.20 -0.9 380,500 + Sama_0315 0.20 -2.1 380,500 + Sama_0315 0.20 -1.7 380,511 + Sama_0315 0.22 -0.6 380,512 - Sama_0315 0.22 -0.1 380,543 + Sama_0315 0.27 -1.5 380,543 + Sama_0315 0.27 +0.5 380,629 - Sama_0315 0.42 +2.7 380,629 - Sama_0315 0.42 -0.3 380,629 - Sama_0315 0.42 -2.2 380,629 - Sama_0315 0.42 -0.1 380,633 - Sama_0315 0.42 -0.8 380,685 + Sama_0315 0.51 -0.2 380,776 + Sama_0315 0.66 -0.6 380,776 + Sama_0315 0.66 -1.2 380,797 + Sama_0315 0.70 -0.5 380,797 + Sama_0315 0.70 -0.0 380,803 + Sama_0315 0.71 -0.7 380,803 + Sama_0315 0.71 +0.5 380,804 - Sama_0315 0.71 -2.2 380,804 - Sama_0315 0.71 +0.1 380,804 - Sama_0315 0.71 -0.8 380,804 - Sama_0315 0.71 -0.2 380,830 + Sama_0315 0.76 -0.7 380,879 + Sama_0315 0.84 +0.3 380,879 + Sama_0315 0.84 -0.1 380,880 - Sama_0315 0.84 +0.0 380,880 - Sama_0315 0.84 -0.2 380,918 + -1.3 380,955 - +2.1 380,955 - +0.8 380,955 - +0.0 380,955 - -1.0 380,955 - -0.8 380,955 - +0.3 380,955 - -0.4 380,955 - -0.4 380,998 + +3.1 380,999 - +1.6 380,999 - -1.2 380,999 - +0.1 380,999 - +2.8 380,999 - +0.9 381,011 + -0.3 381,011 + +0.1 381,011 + +0.2 381,012 - -0.1 381,012 - +1.4 381,012 - +0.6 381,018 - -0.1 381,018 - -0.4 381,018 - -0.1 381,021 + -0.0 381,021 + -0.5 381,022 - -1.6 381,022 - -0.4 381,035 + -1.9 381,036 - +0.4 381,110 - -0.7 381,141 - -0.9 381,152 + -0.8 381,153 - -0.7 381,153 - +1.1 381,241 - Sama_0316 0.16 -0.8 381,245 + Sama_0316 0.17 +0.6 381,272 - Sama_0316 0.20 +0.3 381,272 - Sama_0316 0.20 -0.0 381,272 - Sama_0316 0.20 +1.1 381,272 - Sama_0316 0.20 -1.5 381,272 - Sama_0316 0.20 -0.8 381,378 + Sama_0316 0.33 -0.7 381,379 - Sama_0316 0.33 -0.2 381,446 + Sama_0316 0.41 +0.9 381,450 + Sama_0316 0.41 -1.4 381,451 - Sama_0316 0.41 -0.9 381,451 - Sama_0316 0.41 -1.7 381,517 - Sama_0316 0.49 +0.8 381,520 - Sama_0316 0.50 -0.8 381,675 - Sama_0316 0.68 -0.5 381,682 - Sama_0316 0.69 +0.0 381,682 - Sama_0316 0.69 +0.1 381,749 + Sama_0316 0.77 -0.2 381,749 + Sama_0316 0.77 -0.4 381,752 + Sama_0316 0.78 +0.8 381,752 + Sama_0316 0.78 -0.1 381,752 + Sama_0316 0.78 -0.5 381,753 - Sama_0316 0.78 -0.3 381,753 - Sama_0316 0.78 +4.9 381,753 - Sama_0316 0.78 +0.4 381,755 + Sama_0316 0.78 +0.3 381,909 - -2.2 381,961 + -1.2 381,972 + -1.1 381,973 - -1.3 381,973 - -0.2
Or see this region's nucleotide sequence