Strain Fitness in Shewanella amazonensis SB2B around Sama_0063

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0061 and Sama_0062 are separated by 219 nucleotidesSama_0062 and gpsA are separated by 6 nucleotidesgpsA and Sama_0064 are separated by 70 nucleotides Sama_0061: Sama_0061 - rhodanese-like protein (RefSeq), at 66,964 to 67,356 _0061 Sama_0062: Sama_0062 - preprotein translocase subunit SecB (RefSeq), at 67,576 to 68,055 _0062 Sama_0063: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq), at 68,062 to 69,081 gpsA Sama_0064: Sama_0064 - hypothetical protein (RefSeq), at 69,152 to 70,345 _0064 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 67.097 kb on + strand, within Sama_0061at 67.098 kb on - strand, within Sama_0061at 67.098 kb on - strand, within Sama_0061at 67.111 kb on - strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.311 kb on + strand, within Sama_0061at 67.354 kb on + strandat 67.408 kb on + strandat 69.079 kb on + strandat 69.089 kb on - strandat 69.110 kb on + strandat 69.110 kb on + strandat 69.110 kb on + strandat 69.110 kb on + strandat 69.110 kb on + strandat 69.111 kb on - strandat 69.111 kb on - strandat 69.111 kb on - strandat 69.111 kb on - strandat 69.111 kb on - strandat 69.111 kb on - strandat 69.143 kb on - strandat 69.208 kb on + strandat 69.208 kb on + strandat 69.208 kb on + strandat 69.208 kb on + strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.209 kb on - strandat 69.289 kb on + strand, within Sama_0064at 69.310 kb on + strand, within Sama_0064at 69.311 kb on - strand, within Sama_0064at 69.311 kb on - strand, within Sama_0064at 69.344 kb on + strand, within Sama_0064at 69.345 kb on - strand, within Sama_0064at 69.345 kb on + strand, within Sama_0064at 69.369 kb on + strand, within Sama_0064at 69.406 kb on + strand, within Sama_0064at 69.407 kb on - strand, within Sama_0064at 69.407 kb on - strand, within Sama_0064at 69.437 kb on + strand, within Sama_0064at 69.489 kb on + strand, within Sama_0064at 69.489 kb on + strand, within Sama_0064at 69.489 kb on + strand, within Sama_0064at 69.489 kb on + strand, within Sama_0064at 69.490 kb on - strand, within Sama_0064at 69.490 kb on - strand, within Sama_0064at 69.528 kb on + strand, within Sama_0064at 69.556 kb on + strand, within Sama_0064at 69.556 kb on + strand, within Sama_0064at 69.556 kb on + strand, within Sama_0064at 69.556 kb on + strand, within Sama_0064at 69.719 kb on - strand, within Sama_0064at 69.719 kb on - strand, within Sama_0064at 69.846 kb on + strand, within Sama_0064at 69.846 kb on + strand, within Sama_0064at 69.847 kb on - strand, within Sama_0064at 69.847 kb on - strand, within Sama_0064at 69.847 kb on - strand, within Sama_0064at 69.851 kb on - strand, within Sama_0064at 69.851 kb on - strand, within Sama_0064at 69.851 kb on - strand, within Sama_0064at 69.851 kb on - strand, within Sama_0064at 69.851 kb on - strand, within Sama_0064at 69.880 kb on - strand, within Sama_0064at 69.897 kb on - strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.924 kb on + strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 69.925 kb on - strand, within Sama_0064at 70.008 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.053 kb on + strand, within Sama_0064at 70.054 kb on - strand, within Sama_0064at 70.054 kb on - strand, within Sama_0064at 70.054 kb on - strand, within Sama_0064at 70.070 kb on - strand, within Sama_0064

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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67,097 + Sama_0061 0.34 +0.3
67,098 - Sama_0061 0.34 -0.9
67,098 - Sama_0061 0.34 -0.7
67,111 - Sama_0061 0.37 -0.6
67,218 + Sama_0061 0.65 +1.0
67,218 + Sama_0061 0.65 +1.3
67,218 + Sama_0061 0.65 -0.3
67,218 + Sama_0061 0.65 -1.0
67,218 + Sama_0061 0.65 -0.8
67,218 + Sama_0061 0.65 -0.6
67,218 + Sama_0061 0.65 +1.4
67,218 + Sama_0061 0.65 +0.4
67,218 + Sama_0061 0.65 -1.3
67,220 + Sama_0061 0.65 -0.9
67,220 + Sama_0061 0.65 -0.8
67,220 + Sama_0061 0.65 -0.5
67,220 + Sama_0061 0.65 +1.1
67,220 + Sama_0061 0.65 -1.0
67,220 + Sama_0061 0.65 -1.4
67,220 + Sama_0061 0.65 -1.1
67,292 + Sama_0061 0.83 +1.1
67,292 + Sama_0061 0.83 +0.8
67,292 + Sama_0061 0.83 -2.4
67,292 + Sama_0061 0.83 -1.4
67,292 + Sama_0061 0.83 -0.3
67,292 + Sama_0061 0.83 -1.2
67,294 + Sama_0061 0.84 +2.0
67,294 + Sama_0061 0.84 -0.4
67,294 + Sama_0061 0.84 +0.0
67,294 + Sama_0061 0.84 +0.5
67,294 + Sama_0061 0.84 -0.1
67,311 + Sama_0061 0.88 -0.6
67,354 + -1.4
67,408 + +0.2
69,079 + +1.1
69,089 - -0.0
69,110 + +0.5
69,110 + +0.6
69,110 + +0.0
69,110 + -0.4
69,110 + -0.6
69,111 - -0.7
69,111 - -0.4
69,111 - +0.5
69,111 - +1.7
69,111 - +0.2
69,111 - +1.6
69,143 - -0.7
69,208 + +0.3
69,208 + -1.7
69,208 + -0.2
69,208 + -2.2
69,209 - -0.2
69,209 - -0.4
69,209 - -1.0
69,209 - +1.4
69,209 - -0.2
69,209 - -0.9
69,209 - -1.6
69,209 - +1.6
69,209 - -0.9
69,209 - +0.2
69,209 - +1.0
69,209 - -0.3
69,209 - -1.3
69,289 + Sama_0064 0.11 +0.3
69,310 + Sama_0064 0.13 -0.7
69,311 - Sama_0064 0.13 -0.4
69,311 - Sama_0064 0.13 -0.7
69,344 + Sama_0064 0.16 +0.9
69,345 - Sama_0064 0.16 -0.3
69,345 + Sama_0064 0.16 -0.4
69,369 + Sama_0064 0.18 -0.2
69,406 + Sama_0064 0.21 -0.8
69,407 - Sama_0064 0.21 -0.9
69,407 - Sama_0064 0.21 +0.5
69,437 + Sama_0064 0.24 +0.9
69,489 + Sama_0064 0.28 +1.2
69,489 + Sama_0064 0.28 -1.2
69,489 + Sama_0064 0.28 -0.2
69,489 + Sama_0064 0.28 -0.1
69,490 - Sama_0064 0.28 -1.1
69,490 - Sama_0064 0.28 -1.0
69,528 + Sama_0064 0.31 -0.6
69,556 + Sama_0064 0.34 -0.5
69,556 + Sama_0064 0.34 +0.4
69,556 + Sama_0064 0.34 -0.3
69,556 + Sama_0064 0.34 +0.1
69,719 - Sama_0064 0.47 +0.3
69,719 - Sama_0064 0.47 +1.7
69,846 + Sama_0064 0.58 -0.4
69,846 + Sama_0064 0.58 -0.7
69,847 - Sama_0064 0.58 +0.2
69,847 - Sama_0064 0.58 -2.3
69,847 - Sama_0064 0.58 -0.5
69,851 - Sama_0064 0.59 -1.4
69,851 - Sama_0064 0.59 +2.2
69,851 - Sama_0064 0.59 +0.1
69,851 - Sama_0064 0.59 -2.4
69,851 - Sama_0064 0.59 -0.6
69,880 - Sama_0064 0.61 -0.1
69,897 - Sama_0064 0.62 -2.2
69,924 + Sama_0064 0.65 -0.3
69,924 + Sama_0064 0.65 -0.2
69,924 + Sama_0064 0.65 -2.2
69,924 + Sama_0064 0.65 +0.5
69,924 + Sama_0064 0.65 +1.2
69,924 + Sama_0064 0.65 +0.3
69,924 + Sama_0064 0.65 -0.5
69,924 + Sama_0064 0.65 +1.5
69,924 + Sama_0064 0.65 -0.8
69,924 + Sama_0064 0.65 -1.2
69,924 + Sama_0064 0.65 +1.2
69,924 + Sama_0064 0.65 -0.7
69,924 + Sama_0064 0.65 -1.0
69,925 - Sama_0064 0.65 -1.5
69,925 - Sama_0064 0.65 +1.4
69,925 - Sama_0064 0.65 -0.7
69,925 - Sama_0064 0.65 +0.1
69,925 - Sama_0064 0.65 +0.3
69,925 - Sama_0064 0.65 -1.0
69,925 - Sama_0064 0.65 +1.3
69,925 - Sama_0064 0.65 -0.2
69,925 - Sama_0064 0.65 -1.1
69,925 - Sama_0064 0.65 -0.8
69,925 - Sama_0064 0.65 -1.4
69,925 - Sama_0064 0.65 +0.1
69,925 - Sama_0064 0.65 -0.4
69,925 - Sama_0064 0.65 +0.7
70,008 + Sama_0064 0.72 -0.5
70,053 + Sama_0064 0.75 +2.3
70,053 + Sama_0064 0.75 +0.2
70,053 + Sama_0064 0.75 +2.1
70,053 + Sama_0064 0.75 -0.4
70,053 + Sama_0064 0.75 -0.4
70,053 + Sama_0064 0.75 -1.6
70,053 + Sama_0064 0.75 -0.5
70,054 - Sama_0064 0.76 +1.3
70,054 - Sama_0064 0.76 -0.7
70,054 - Sama_0064 0.76 +0.5
70,070 - Sama_0064 0.77 -1.1

Or see this region's nucleotide sequence